mitk Namespace Reference

Find image slices visible on a given plane. More...

Namespaces
	BaseRendererHelper
	Helper functions related to BaseRenderer geometry alignment.
	BooleanOperation
	Namespace providing boolean set operations on multi-label segmentations.
	cl
	ColorConversions
	Conversion routines between different color spaces.
	convolution
	Helper functions for 1D convolution via VNL Fourier transformation.
	DICOMIOHelper
	Helper namespace for DICOM I/O operations.
	DisplayActionEventFunctions
	Factory functions that create std::function callbacks for display action events.
	Forms
	ImageMappingHelper
	Namespace providing helper functions for mapping (resampling) MITK images using MatchPoint registrations.
	InterpolateImageFunction
	LabelPropertyConstants
	Constants for property key path elements of properties of the label.
	LabelSetImageHelper
	MemoryUtilities
	Utility functions for querying system and process memory information.
	MitkMultilabelIOMimeTypes
	Provides custom MIME types for multi-label segmentation IO.
	MitkROIIOMimeTypes
	MIME type definitions for the MITK ROI file format.
	MitkSegmentationIOMimeTypes
	MIME type definitions for segmentation I/O operations.
	modelFit
	MultiLabelSegmentationMappingHelper
	Namespace providing helper functions for mapping multi-label segmentations using MatchPoint registrations.
	nnInteractive
	PlaneClipping
	Utility functions for plane clipping calculations.
	PointSetMappingHelper
	Namespace providing helper functions for mapping MITK point sets using MatchPoint registrations.
	PropertyPersistenceDeserialization
	Namespace for default property persistence deserialization functions.
	PropertyPersistenceSerialization
	Namespace for default property persistence serialization functions.
	python
	PythonHelper
	PythonSegmentationUI
	Namespace for the PythonSegmentationUI module.
	RenderWindowLayerUtilities
	ROIMapperHelper
	Helper functions shared by ROIMapper2D and ROIMapper3D.
	SceneReaderHelpers
	SegmentationHelper
	Helper functions for segmentation operations.
	SliceNavigationHelper
	TotalSegmentator
	UndoRedoPreferenceHelper
	Shared access to the undo/redo preferences (node "/General/UndoRedo").
	Utf8Util
	Utility functions for UTF-8 string conversion.

Classes
class	ExampleDataStructureReaderService
	The reader service for the MITK example data type. More...
class	ExampleDataStructureSerializer
	Serializes mitk::ExampleDataStructure for mitk::SceneIO. More...
class	ExampleDataStructureWriterService
class	ExampleIOMimeTypes
class	ExampleDataStructure
	Example Data Structure. More...
class	ExampleInteractor
class	AnisotropicIterativeClosestPointRegistration
	Implementation of the anisotropic iterative closest point (A-ICP) algorithm. More...
class	AnisotropicRegistrationCommon
	A Class that provides common static functions used by all classes and tests in the anisotropic iterative closest point algorithm (AnisotropicIterativeClosestPointRegistration). More...
class	AutoCropImageFilter
	Shrink the image borders to a minimum considering a background color. More...
class	BoundingObjectCutAndCast
	Cuts a BoundingObject region out of an image and casts the result to a specific pixel type. More...
class	BoundingObjectCutter
	Cuts a BoundingObject region out of a mitk::Image. More...
class	BoundingObjectToSegmentationFilter
	Converts a BoundingObject or BoundingObjectGroup into a binary segmentation image. More...
class	CovarianceMatrixCalculator
	Computes covariance matrices for every vertex of a Surface, for use in the anisotropic ICP (A-ICP) algorithm. More...
class	CropTimestepsImageFilter
	Crops timesteps from 2D+t and 3D+t images. More...
class	GeometryClipImageFilter
	Filter for clipping an image with a PlaneGeometry. More...
class	GeometryDataSource
	Superclass of all classes generating GeometryData as output. More...
class	HeightFieldSurfaceClipImageFilter
	Filter for clipping an image with an height-field represented by an mitk::Surface. More...
class	LabeledImageToSurfaceFilter
	Generates surface representations from labeled (segmented) images. More...
class	MaskAndCutRoiImageFilter
	Cuts and masks a region of interest (ROI) out of an image. More...
class	MaskImageFilter
	Masks an image with a binary mask image. More...
class	MovieGenerator
	Abstract base class for recording movies from OpenGL render windows. More...
class	MovieGeneratorWin32
	Win32-specific implementation of MovieGenerator using Video for Windows (VFW). More...
class	NonBlockingAlgorithm
	Base class for algorithms that can run in a background thread. More...
class	NonBlockingAlgorithmEvent
	Base event class for NonBlockingAlgorithm notifications. More...
class	ResultAvailable
	Event indicating that a NonBlockingAlgorithm has produced a result. More...
class	ProcessingError
	Event indicating that a NonBlockingAlgorithm has encountered an error. More...
class	PadImageFilter
	PadImageFilter class pads the first input image to the size of the second input image. Two Images have to be set. The first image is the image to pad. The second image defines the pad size. It is also possible to use an included binary filter. More...
class	PlaneFit
	Fits a plane to a point set using least-squares orthogonal distance regression. More...
class	PlaneLandmarkProjector
	Thin-plate-spline-based landmark projector onto a plane geometry. More...
class	PointLocator
	Convenience wrapper around ANN (Approximate Nearest Neighbours) for fast nearest-neighbour point searches. More...
class	SegmentationSink
	A NonBlockingAlgorithm that places segmentation results into the DataStorage. More...
class	SimpleHistogram
	Abstract base class for simple histograms with double values. More...
class	SimpleImageHistogram
	Histogram implementation for mitk::Image data. More...
class	SimpleHistogramCache
	Cache for SimpleHistogram objects to avoid redundant recomputation. More...
class	SurfaceToPointSetFilter
	Convert a Surface into a PointSet without duplicate points. More...
class	WeightedPointTransform
	This class implements an extension of the weighted point based registration algorithm from A. Danilchenko, R. Balachandran and J. M. Fitzpatrick. More...
class	ColorBarAnnotation
	Displays a configurable color bar (scalar bar) on the render window. More...
class	LabelAnnotation3D
	Can display a high amount of 3D labels to a PointSet. More...
class	LayoutAnnotationRenderer
	The LayoutAnnotationRenderer is used for the layouted placement of mitk::Annotation Objects. More...
class	LogoAnnotation
	Displays a logo on the renderwindow. More...
class	ManualPlacementAnnotationRenderer
	The ManualPlacementAnnotationRenderer is used for the simple placement of mitk::Annotation Objects. More...
class	ScaleLegendAnnotation
	Displays configurable scales on the renderwindow. The scale is determined by the image spacing. More...
class	TextAnnotation2D
	Displays text on the renderwindow. More...
class	TextAnnotation3D
	Displays at 3D position, always facing the camera. More...
class	VtkAnnotation
	Base class for all annotations that use the VTK framework for rendering. More...
class	VtkAnnotation2D
	Base class for VTK-based 2D annotations rendered as vtkActor2D elements. More...
class	VtkAnnotation3D
	Base class for VTK-based 3D annotations rendered as vtkProp elements. More...
class	BaseApplication
class	ProvisioningInfo
	Parses a provisioning file to determine which plugins to install and start. More...
class	ArithmeticOperation
	Provides static methods for voxel-wise arithmetic operations on images. More...
class	NonStaticArithmeticOperation
	Internal helper class for executing two-image arithmetic operations with ITK filters. More...
class	MaskCleaningOperation
	Provides static methods for cleaning and filtering segmentation masks. More...
class	TransformationOperation
	Provides static methods for image transformations including multi-resolution decomposition, Laplacian of Gaussian filtering, wavelet transforms, and image resampling. More...
class	BoundingShapeCropper
	Crops or masks an image using a bounding box defined by GeometryData. More...
class	BoundingShapeInteractor
	Interactor for manipulating bounding shapes (GeometryData). More...
class	BoundingShapeObjectFactory
	Object factory that registers mappers and default properties for bounding shape data. More...
class	BoundingShapeVtkMapper2D
	VTK-based 2D mapper for rendering bounding shape cross-sections and handles. More...
class	BoundingShapeVtkMapper3D
	VTK-based 3D mapper for rendering bounding shapes as wireframe cubes with handles. More...
class	Handle
	Helper Class for realizing the handles of bounding object encapsulated by a geometry data. More...
class	CESTDICOMReaderService
	Service wrapper that auto-selects the best DICOMFileReader for CEST data. More...
class	CESTDICOMManualReaderService
	Service wrapper for generic CEST DICOM loading with manual meta data configuration. More...
class	CESTIOActivator
	Module activator for the CEST IO module. More...
class	MitkCESTIOMimeTypes
	Provides the custom mime types for MitkCEST. More...
class	CESTImageNormalizationFilter
	Normalization filter for CEST images using M0 reference images. More...
class	CustomTagParser
	Parser for the Siemens private DICOM tag (0x0029, 0x1020) to extract CEST sequence parameters. More...
class	ChartExampleTestHelper
	Test helper class for QmitkChartWidget unit tests. More...
class	AbstractClassifier
	Abstract base class for machine learning classifiers. More...
struct	FeatureID
	Unique identifier for a computed image feature. More...
class	AbstractGlobalImageFeature
class	ConfigurationHolder
	A variant-like container for storing typed configuration values. More...
class	IntensityQuantifier
	Maps continuous image intensity values to discrete histogram bin indices. More...
class	MRNormLinearStatisticBasedFilter
	Normalizes MR images using linear scaling based on statistical measures within a mask region. More...
class	MRNormTwoRegionsBasedFilter
	Normalizes MR images using linear scaling based on statistics from two distinct mask regions. More...
class	CLUtil
	Collection of static utility functions for classification and image processing. More...
class	GIFCooccurenceMatrix
class	GIFCooccurenceMatrix2
	Calculates features based on the co-occurrence matrix. More...
class	GIFCurvatureStatistic
	Calculates features based on the co-occurrence matrix. More...
class	GIFFirstOrderHistogramStatistics
	Calculates first order features based on a histogram. More...
class	GIFFirstOrderNumericStatistics
class	GIFFirstOrderStatistics
struct	GreyLevelDistanceZoneFeatures
	Data structure holding all Grey Level Distance Zone feature values. More...
class	GIFGreyLevelDistanceZone
class	GIFGreyLevelRunLength
	Calculates the Run Length based features. More...
class	GIFGreyLevelSizeZone
class	GIFImageDescriptionFeatures
	Calculates simple features that describe the given image / mask. More...
class	GIFIntensityVolumeHistogramFeatures
	Calculates the Intensity Volume Histogram features. More...
class	GIFLocalIntensity
	Calculates the local intensity features. More...
class	GIFNeighbourhoodGreyLevelDifference
	Calculates features based on the neighbourhood grey level difference. More...
class	GIFNeighbourhoodGreyToneDifferenceFeatures
	Calculates the Neighbourhood Grey Tone Difference Features. More...
class	GIFNeighbouringGreyLevelDependenceFeature
	Calculates the Neighbouring Grey Level Dependence Features. More...
class	GIFVolumetricDensityStatistics
	Calculates Volumetric Density Features. More...
class	GIFVolumetricStatistics
	Calculates simpel shape-related features. More...
class	RandomImageSampler
	Randomly samples voxels from a label image using configurable strategies. More...
class	ContourElement
	Represents a contour in 3D space as a sequence of linked vertices. More...
class	ContourModel
	A time-resolved contour representation consisting of linked vertices in 3D space. More...
class	ContourModelMapper2D
	OpenGL-based mapper to display a mitk::ContourModel in a 2D render window. More...
class	ContourModelMapper2DBase
	Abstract base class for OpenGL-based 2D contour mappers. More...
class	ContourModelMapper3D
	VTK-based mapper to display a mitk::ContourModel in a 3D render window. More...
class	ContourModelSerializer
	Serializer for mitk::ContourModel objects. More...
class	ContourModelSet
	A collection of ContourModel instances managed as a single BaseData object. More...
class	ContourModelSetMapper2D
	OpenGL-based mapper to display a mitk::ContourModelSet in a 2D render window. More...
class	ContourModelSetMapper3D
	VTK-based mapper to display a mitk::ContourModelSet in a 3D render window. More...
class	ContourModelSetSerializer
	Serializer for mitk::ContourModelSet objects. More...
class	ContourModelSetSource
	Base class for all pipeline sources that produce mitk::ContourModelSet outputs. More...
class	ContourModelSource
	Base class for all pipeline sources that produce mitk::ContourModel outputs. More...
class	ContourModelSubDivisionFilter
	Filter that interpolates a subdivision curve between control points of a contour. More...
class	ContourModelToPointSetFilter
	Filter that converts a mitk::ContourModel into a mitk::PointSet. More...
class	ContourModelToSurfaceFilter
	Filter that converts a mitk::ContourModel into a mitk::Surface. More...
class	ContourModelUtils
	Static utility methods for working with contour models and images. More...
class	ContourObjectFactory
	Object factory that registers mappers and I/O for contour model types. More...
class	ImageToContourModelFilter
	Filter that extracts contour lines from a 2D image at a given iso-value. More...
class	ContourModelReader
	Reader for mitk::ContourModel objects stored in XML format. More...
class	ContourModelSetReader
	Reader for mitk::ContourModelSet objects stored in XML format. More...
class	ContourModelSetWriter
	XML-based writer for mitk::ContourModelSet. More...
class	ContourModelWriter
	XML-based writer for mitk::ContourModels. More...
class	AbstractAnnotationRenderer
	Base class for Annotation layout managers. More...
class	AbstractFileIOReader
struct	AbstractFileIOWriter
class	AbstractFileIO
	Abstract base class for implementing a combined file reader and writer. More...
class	AbstractFileReader
	Base class for creating mitk::BaseData objects from files or streams. More...
class	AbstractFileWriter
	Base class for writing mitk::BaseData objects to files or streams. More...
class	AbstractTransformGeometry
	Geometry describing a curved 2D manifold in 3D space via a vtkAbstractTransform. More...
class	Action
	Represents an action that is executed after a certain event in the state machine mechanism. More...
class	AnatomicalStructureColorPresets
	Provides anatomical structure color presets loaded from XML. More...
class	Annotation
	Base class for all Annotation objects. More...
class	AnnotationProperty
	Property for storing a text annotation with a 3D position. More...
class	AnnotationUtils
	Provides static utility functions for accessing registered AnnotationRenderers and Annotations. More...
class	ApplicationCursorImplementation
	Abstract interface for toolkit-specific cursor implementations. More...
class	ApplicationCursor
	Singleton for overriding the application's cursor. More...
class	ApplyTransformMatrixOperation
	Operation that applies a VTK 4x4 transform matrix to a geometry. More...
class	ArbitraryTimeGeometry
class	BaseController
	Base class for renderer slice, camera, and time control. More...
class	BaseData
	Base class of all data objects. More...
class	BaseDataSource
	Superclass of all classes generating some kind of mitk::BaseData. More...
class	BaseDataTestImplementation
	Implementation of BaseData (for testing). More...
class	BaseGeometry
	Abstract base class describing the geometry of a data object. More...
class	BaseProperty
	Abstract base class for properties. More...
class	BaseRenderer
	Organizes the rendering process. More...
class	BindDispatcherInteractor
	Connects a DataStorage with a Dispatcher for interaction event routing. More...
class	CallbackEventOneParameter
	ITK event that carries a single typed parameter for CallbackFromGUIThread. More...
class	CallbackFromGUIThreadImplementation
	Toolkit-specific implementation of mitk::CallbackFromGUIThread. More...
class	CallbackFromGUIThread
	Allows threads to call some method from within the GUI thread. More...
class	CameraController
	Controls the camera used by the associated BaseRenderer. More...
class	CameraRotationController
	Controls azimuthal camera rotation driven by a Stepper. More...
class	ChannelDescriptor
	Holds essential information about a single channel of an Image. More...
class	ClippedSurfaceBoundsCalculator
class	ClippingProperty
	Property for defining a clipping plane for datasets. More...
class	ColorProperty
	Property for storing RGB color values. More...
struct	CompareFilterResults
	Holds the detailed results of a CompareImageDataFilter comparison. More...
class	CompareImageDataFilter
	Filter for pixel-wise comparison of two mitk::Image objects. More...
class	Convert2Dto3DImageFilter
	Converts a 2D MITK image to a 3D MITK image with a single slice. More...
class	CoreObjectFactory
	The central factory for creating mappers and setting default properties for MITK core data types. More...
class	CoreObjectFactoryBase
	Abstract base class for factories that create mappers and set default properties. More...
class	CoreServices
	Provides convenient static access to common MITK core service objects. More...
class	CoreServicePointer
	RAII wrapper for core service objects. More...
class	CrosshairData
	Data class that stores the 3D position for a crosshair. More...
class	CrosshairManager
	The CrosshairManager takes care of the correct settings for the crosshair. More...
class	CrosshairVtkMapper2D
	VTK-based 2D mapper for rendering a crosshair. More...
class	CustomMimeType
	A custom mime-type that can be registered as a service object. More...
class	DataInteractor
	Base class for interactors that operate on DataNodes. More...
class	DataNode
	Central node class of the MITK data tree, associating a data object with properties and mappers. More...
class	DataNodeSource
	Superclass of all classes generating DataNode instances as output. More...
class	DataStorage
	Abstract data management class that organizes DataNode objects in a directed acyclic graph. More...
class	DataStorageReference
	Lightweight metadata container for DataStorage instances. More...
class	DataStorageService
	Default implementation of IDataStorageService. More...
class	Dispatcher
	Central event distribution hub for interaction events. More...
class	DisplayActionEventBroadcast
	Event state machine that observes interaction events and broadcasts display action events. More...
class	DisplayActionEventHandler
	Simplifies connecting display action event observers to a DisplayActionEventBroadcast. More...
class	DisplayActionEventHandlerDesynchronized
	Handler that connects desynchronized (per-renderer) display actions. More...
class	DisplayActionEventHandlerStd
	Handler that connects a standard mix of synchronized and desynchronized display actions. More...
class	DisplayActionEventHandlerSynchronized
	Handler that connects synchronized display actions across all renderers. More...
class	DisplayActionEvent
	Base class for display action events broadcast by DisplayActionEventBroadcast. More...
class	DisplayMoveEvent
	Display action event carrying a 2D move vector for camera panning. More...
class	DisplaySetCrosshairEvent
	Display action event carrying a 3D world position for crosshair placement. More...
class	DisplayZoomEvent
	Display action event carrying a zoom factor and start coordinate. More...
class	DisplayScrollEvent
	Display action event carrying a slice scroll delta and auto-repeat flag. More...
class	DisplaySetLevelWindowEvent
	Display action event carrying level and window values for level-window adjustment. More...
class	EnumerationProperty
	Property for storing enumeration-like values identified by id and name. More...
class	EventConfig
	Configuration Object for Statemachines. More...
class	EventFactory
	Generates InteractionEvent-Objects/XML. More...
struct	EventInformerService
	Interface for the micro service that manages InteractionEventObserver registration and notification. More...
class	EventRecorder
	Observer that enables recording of all user interaction with the render windows and storing it in an XML file. More...
class	EventStateMachine
	Provides state machine functionality for DataInteractors. More...
class	Exception
	Base class for all MITK exceptions. More...
class	ExtractSliceFilter
	ExtractSliceFilter extracts a 2D arbitrary oriented slice from a 3D volume. More...
class	ExtractSliceFilter2
	Extract an arbitrarily oriented 2D image from a 3D image. More...
class	FileReaderRegistry
	Registry that provides convenient access to IFileReader service instances. More...
class	FileReaderSelector
	Selects the most suitable IFileReader for a given file path. More...
class	FileWriterRegistry
	Provides convenient access to mitk::IFileWriter instances and writing files from mitk::BaseData types. More...
class	FileWriterSelector
	Selects the most suitable IFileWriter for a given BaseData object. More...
class	FloatPropertyExtension
	Property extension for mitk::FloatProperty. More...
class	GenericIDRelationRule
	Relation rule for ID-only relations between IIdentifiable property providers. More...
class	GenericLookupTable
	Template class for generating lookup-tables. More...
class	GenericProperty
	Template class for generating properties for simple value types (int, float, bool, etc.). More...
class	Geometry3D
	Standard three-dimensional geometry. More...
class	GeometryData
	Data class that holds only a BaseGeometry without any specific data payload. More...
class	GeometryDataReaderService
class	GeometryDataWriterService
class	GeometryTransformHolder
	Helper class that manages transform-related variables for geometries. More...
class	HasMethodGetStaticNameOfClass
struct	StaticNameOfClass
struct	StaticNameOfClass< T, true >
class	HasTypeSuperclass
struct	GetSuperclassType
struct	GetSuperclassType< T, true >
class	GroupTagProperty
	Property class that carries no value, used as a tag for group membership. More...
class	HistogramGenerator
	Provides an easy way to calculate an itk::Histogram for a mitk::Image. More...
class	IDataStorageService
	Service interface for managing DataStorage instances. More...
class	Identifiable
	Base class of identifiable objects. More...
struct	IFileIO
	Common interface for all MITK file readers and writers. More...
struct	IFileReader
	The common interface for all MITK file readers. More...
struct	IFileWriter
	The common interface of all MITK file writers. More...
class	Image
	Image class for storing multi-dimensional medical image data. More...
class	AccessByItkException
	Exception class thrown in AccessByItk macros. More...
struct	ImageAccessorWaitLock
	Wait-lock structure allowing ImageAccessors to wait for each other. More...
class	ImageAccessorBase
class	MemoryIsLockedException
class	ImageCaster
	Proxy class for global image casting functions needed by the Python wrapping process. More...
class	Caster
	Helper class providing a static cast method for BaseData to Surface. More...
class	RendererAccess
	Helper class to store and retrieve a vtkRenderer for 3D rendering access. More...
class	ImageChannelSelector
	Provides access to a channel of the input image. More...
class	ImageDataItem
	Internal container for image data used by mitk::Image. More...
class	ImageDescriptor
	Holds all essential metadata about an Image object. More...
class	ImageGenerator
	Generator for synthetic MITK images. More...
class	ImagePixelAccessor
	Provides templated image access for all inheriting classes. More...
class	ImagePixelReadAccessor
	Gives locked and index-based read access for a particular image part. More...
class	ImagePixelWriteAccessor
	Gives locked and index-based write access for a particular image part. More...
class	ImageReadAccessor
	Provides locked read-only access to a particular region of image data. More...
class	ImageSliceSelector
	Provides access to a single slice of the input image. More...
class	ImageSource
	Superclass of all classes generating Images (instances of class Image) as output. More...
class	ImageStatisticsHolder
	Class holding the statistics information about a single mitk::Image. More...
class	ImageTimeSelector
	Provides access to a volume at a specific time step of the input image. More...
class	ImageToImageFilter
	Superclass of all classes having one or more Images as input and generating Images as output. More...
class	ImageToItk
class	ImageToSurfaceFilter
	Converts pixel data to surface data by using a threshold. More...
class	ImageVtkMapper2D
	Mapper to resample and display 2D slices of a 3D image. More...
class	ImageVtkReadAccessor
	Provides read access to image data in the form required by VTK methods. More...
class	ImageVtkWriteAccessor
	Provides write access to image data in the form required by VTK methods. More...
class	ImageWriteAccessor
	Provides locked write access to a particular region of image data. More...
struct	IMimeTypeProvider
	Service interface for querying all registered mime-types. More...
class	INodeSelectionListener
	Interface for listening to node selections sent via the INodeSelectionService. More...
class	INodeSelectionService
	A simple messaging service for sending and receiving data node selections for certain contexts. More...
class	InteractionEvent
	Base class for all interaction events in MITK. More...
struct	InteractionEventConst
	Constants to describe Mouse Events and special Key Events. More...
class	InteractionEventHandler
	Base class for all objects that handle mitk::InteractionEvents. More...
class	InteractionEventObserver
	Interface for observing all InteractionEvents dispatched through the system. More...
class	InteractionKeyEvent
	Represents a keyboard interaction event. More...
class	InteractionPositionEvent
	Super class for all position-aware interaction events. More...
class	InteractionSchemeSwitcher
class	InternalEvent
	Class to create events from within the application to signal about internal events. More...
class	IntPropertyExtension
	Property extension for mitk::IntProperty. More...
struct	IOConstants
	Defines string constants for I/O option keys and values. More...
struct	IOMetaInformationPropertyConstants
	Property key path constants for IO meta information. More...
class	IOMimeTypes
	Collection of predefined MITK mime-types and factory methods. More...
class	IOUtil
	A utility class to load and save data from/to the local file system. More...
class	IOVolumeSplitReason
	Records the reasons why a DICOM volume was split during loading. More...
class	IPersistenceService
	The central service for the persistence module. More...
class	IPreferences
	Interface to application preferences. More...
class	IPreferencesService
	A service for persistent application preferences. More...
class	IPreferencesStorage
	The backend for persistent preferences. More...
class	IPropertyAliases
	Interface of property aliases service. More...
class	IPropertyDescriptions
	Interface of property descriptions service. More...
class	IPropertyDeserialization
	Interface of property deserialization service. More...
class	IPropertyExtensions
	Interface of property extensions service. More...
class	IPropertyFilters
	Interface of property filters service. More...
class	IPropertyOwner
	Interface implemented by classes that provide write/read access to property information. More...
class	IPropertyPersistence
	Interface of property persistence service. More...
class	IPropertyProvider
	Interface implemented by classes that provide access to property information. More...
class	IPropertyRelations
	Interface of property relations service. More...
class	IPropertyTransience
	Interface of the property transience service. More...
class	ITKEventObserverGuard
	Convenience class that helps to manage the lifetime of itk event observers. More...
class	ITKImageImport
	Pipelined import of itk::Image. More...
class	ItkImageIO
	Wraps ITK image IO objects as mitk::IFileReader and mitk::IFileWriter objects. More...
class	ItkLoggingAdapter
	Adapter that overwrites the standard ITK logging output window and redirects logging messages to the MITK logging system. More...
class	ItkMatrixHack
	Internal hack to set m_MatrixMTime of itk::MatrixOffsetTransformBase correctly after changing the matrix. For internal use only. More...
class	LandmarkProjector
	Base class of landmark projectors, which project the target landmarks to create source landmarks. More...
class	LandmarkProjectorBasedCurvedGeometry
	Superclass of AbstractTransformGeometry sub-classes defined by a set of landmarks. More...
class	LevelWindow
	The LevelWindow class Class to store level/window values. More...
class	LevelWindowManager
	Provides access to the LevelWindowProperty object and LevelWindow of the "current" image. More...
class	LevelWindowPreset
	Manages level/window presets loaded from an XML file. More...
class	LevelWindowProperty
	Property for storing a mitk::LevelWindow value. More...
class	LimitedLinearUndo
	A linear undo model with one undo and one redo stack. More...
class	Line
	Describes a line in N-dimensional space. More...
struct	LocaleSwitch
	Convenience class to temporarily change the current locale. More...
class	BaseLocalStorageHandler
	Interface for accessing (templated) LocalStorageHandler instances. More...
class	LocalStorageHandler
	Templated class for management of LocalStorage implementations in Mappers. More...
class	LogBackend
	Log backend implementation for MITK. More...
class	LookupTable
	MITK wrapper for a vtkLookupTable. More...
class	LookupTableProperty
	Property to associate a mitk::LookupTable with a DataNode. More...
class	Mapper
	Base class of all mappers, Vtk as well as OpenGL mappers. More...
class	Material
	Encapsulates 3D visualization properties which are forwarded to VTK for color mapping. More...
class	Matrix
	MITK matrix type extending itk::Matrix with additional constructors and utility methods. More...
class	MessageAbstractDelegate
	Abstract base class for message delegates with no parameters. More...
class	MessageAbstractDelegate1
	Abstract base class for message delegates with one parameter. More...
class	MessageAbstractDelegate2
	Abstract base class for message delegates with two parameters. More...
class	MessageAbstractDelegate3
	Abstract base class for message delegates with three parameters. More...
class	MessageAbstractDelegate4
	Abstract base class for message delegates with four parameters. More...
class	MessageDelegate
	Wraps a member function pointer with signature A(R::*function)(). More...
class	MessageDelegate1
	Wraps a member function pointer with signature A(R::*function)(T). More...
class	MessageDelegate2
	Wraps a member function pointer with signature A(R::*function)(T, U). More...
class	MessageDelegate3
	Wraps a member function pointer with signature A(R::*function)(T, U, V). More...
class	MessageDelegate4
	Wraps a member function pointer with signature A(R::*function)(T, U, V, W). More...
class	MessageBase
	Base class for message/event objects that manage a list of delegate listeners. More...
class	Message
	Event/message/notification class. More...
class	Message1
	Event/message class with one parameter. More...
class	Message2
	Event/message class with two parameters. More...
class	Message3
	Event/message class with three parameters. More...
class	Message4
	Event/message class with four parameters. More...
class	MimeType
	Immutable, value-type wrapper for a registered mime-type. More...
class	ModalityProperty
	Enumeration property for known imaging modalities. More...
class	ModifiedLock
	RAII guard that defers BaseGeometry::Modified() calls until destruction. More...
class	MouseDoubleClickEvent
	Interaction event class representing a mouse double-click. More...
class	MouseMoveEvent
	Interaction event class representing mouse movement. More...
class	MousePressEvent
	Interaction event class representing a mouse button press. More...
class	MouseReleaseEvent
	Interaction event class representing a mouse button release. More...
class	MouseWheelEvent
	Interaction event class representing a mouse wheel scroll. More...
class	MultiComponentImageDataComparisonFilter
	Filter for comparing two multi-channel mitk::Image objects by pixel values. More...
class	NodePredicateAnd
	Composite predicate that forms a logical AND (conjunction) from its child predicates. More...
class	NodePredicateBase
	Abstract base class for predicates used to filter DataNode objects in DataStorage queries. More...
class	NodePredicateCompositeBase
	Abstract base class for composite predicates that contain child predicates (e.g., AND, OR, NOT). More...
class	NodePredicateData
	Predicate that evaluates if the given DataNode's data object pointer equals a given pointer. More...
class	NodePredicateDataProperty
	Predicate that evaluates if the data of a given DataNode has a specific property. More...
class	NodePredicateDataType
	Predicate that evaluates if the given DataNode's data object is of a specific data type. More...
class	TNodePredicateDataType
	Tests for type compatibility (dynamic_cast). More...
class	NodePredicateDataUID
	Predicate that compares the data UID of the given DataNode to a specific UID. More...
class	NodePredicateDimension
	Predicate that evaluates if the given DataNode's data object has the specified dimension, for datasets where dimension is applicable. More...
class	NodePredicateFunction
	Predicate that transfers the check to a specific Callable. More...
class	NodePredicateGeometry
	Predicate that evaluates if the given DataNode's data object has the same geometry (in terms of spacing, origin, orientation) as the reference geometry. More...
class	NodePredicateNot
	Composite predicate that negates (logically inverts) its single child predicate. More...
class	NodePredicateOr
	Composite predicate that forms a logical OR (disjunction) from its child predicates. More...
class	NodePredicateProperty
	Predicate that evaluates whether a DataNode has a specific property. More...
class	NodePredicateSubGeometry
	Predicate that evaluates if the given DataNode's data object has a geometry that is a sub geometry of the reference geometry. More...
class	Operation
	Base class for all operations in the undo/redo framework. More...
class	OperationEndEvent
	ITK event fired after an operation has been executed. More...
class	OperationActor
	abstract class, that can be used by Undo to undo an operation. More...
class	UndoStackItem
	Represents an entry on the undo or redo stack. More...
class	OperationEvent
	Pairs a do-operation with its inverse undo-operation. More...
class	PixelType
	Describes the data type of image pixels. More...
struct	AssertImageTypeIsValid
	Compile-time check for supported ITK image types. More...
struct	EmptyType
	Sentinel type used to mark unused slots in a PixelTypeList. More...
struct	PixelTypeList
	Compile-time list of pixel types (up to 10 types). More...
struct	PixelTypeList< EmptyType, EmptyType, EmptyType, EmptyType, EmptyType, EmptyType, EmptyType, EmptyType, EmptyType, EmptyType >
struct	PixelTypeLength
	Compile-time query for the number of types in a PixelTypeList. More...
struct	GetPixelType
	Compile-time accessor that retrieves the type at position Index in a PixelTypeList. More...
struct	GetPixelType< TypeList, Index, Step, Stop, true >
struct	GetPixelType< TypeList, Index, Step, true, OutOfRange >
struct	PixelTypeSwitch
	Run-time type switch over a PixelTypeList. More...
struct	PixelTypeSwitch< TypeList, Index, true >
struct	AccessItkImageFunctor
	Functor that converts a mitk::Image to an itk::Image and invokes a callback. More...
struct	MapPixelComponentType
struct	isPrimitiveType
	This is an implementation of a type trait to provide a compile-time check for PixelType used in the instantiation of an itk::Image. More...
struct	isPrimitiveType< unsigned char >
	Partial specialization (unsigned char) for the isPrimitiveType object. More...
struct	isPrimitiveType< char >
	Partial specialization (char) for the isPrimitiveType object. More...
struct	isPrimitiveType< signed char >
	Partial specialization (signed char) for the isPrimitiveType object. More...
struct	isPrimitiveType< unsigned short >
	Partial specialization (unsigned short) for the isPrimitiveType object. More...
struct	isPrimitiveType< short >
	Partial specialization (short) for the isPrimitiveType object. More...
struct	isPrimitiveType< unsigned int >
	Partial specialization (unsigned int) for the isPrimitiveType object. More...
struct	isPrimitiveType< int >
	Partial specialization (int) for the isPrimitiveType object. More...
struct	isPrimitiveType< long int >
	Partial specialization (long int) for the isPrimitiveType object. More...
struct	isPrimitiveType< long unsigned int >
	Partial specialization (long unsigned int) for the isPrimitiveType object. More...
struct	isPrimitiveType< float >
	Partial specialization (float) for the isPrimitiveType object. More...
struct	isPrimitiveType< double >
	Partial specialization (double) for the isPrimitiveType object. More...
struct	ImageTypeTrait
	Compile-time trait that maps a pixel type and dimension to the corresponding ITK image type. More...
struct	ImageTypeTrait< itk::VariableLengthVector< TPixelType >, VDimension >
	Specialization of ImageTypeTrait for itk::VariableLengthVector pixel types (vector images). More...
struct	ImageTypeTrait< T, 0 >
	Specialization of ImageTypeTrait when VDimension is 0 (type is already an image type). More...
struct	ImageTypeTrait< itk::VectorImage< TPixelType, VDimension >, 0 >
	Specialization of ImageTypeTrait for itk::VectorImage when VDimension is 0. More...
struct	PixelTypeTrait
	Compile-time trait for resolving the ValueType from an ItkImageType. More...
struct	PixelTypeTrait< false, T >
	Partial specialization for the PixelTypeTrait. More...
struct	GetComponentType
	Compile time resolving of the type of a component. More...
struct	ComponentsTrait
	Object for compile-time resolving of the number of components for given type. More...
struct	ComponentsTrait< false, T >
	Partial specialization for the ComponentsTraits in case of compound types. More...
struct	MapCompositePixelType
	Object for compile-time translation of a composite pixel type into an itk::ImageIOBase::IOPixelType information. More...
struct	MapCompositePixelType< itk::RGBPixel< C > >
struct	MapCompositePixelType< itk::RGBAPixel< C > >
struct	MapCompositePixelType< itk::DiffusionTensor3D< C > >
struct	MapCompositePixelType< itk::VariableLengthVector< C > >
struct	MapCompositePixelType< itk::Vector< C, N > >
struct	MapCompositePixelType< itk::FixedArray< C, N > >
struct	MapCompositePixelType< itk::CovariantVector< C, N > >
struct	MapCompositePixelType< itk::Matrix< C, N > >
struct	MapPixelType
	Object for compile-time translation of a pixel type into an itk::ImageIOBase::IOPixelType information. More...
struct	MapPixelType< T, true >
	Partial specialization for setting the IOPixelType for primitive types to SCALAR. More...
class	PlaneGeometry
	Describes the geometry of a plane object. More...
class	PlaneGeometryData
	Data class containing PlaneGeometry objects. More...
class	PlaneGeometryDataMapper2D
	VTK-based 2D mapper for rendering a crosshair with the plane geometry. More...
class	PlaneGeometryDataToSurfaceFilter
	Superclass of all classes having a PlaneGeometryData as input and generating Images as output. More...
class	PlaneGeometryDataVtkMapper3D
	Vtk-based mapper to display a PlaneGeometry in a 3D window. More...
class	PlaneOperation
	Operation for setting a plane defined by its origin and normal or axis vectors. More...
class	PlaneOrientationProperty
	Enumeration property controlling orientation arrows on 2D plane representations. More...
class	PlanePositionManagerService
	Service that holds and manages a list of stored plane positions. More...
class	Point
	MITK point type extending itk::Point with additional constructors and utility methods. More...
class	PointOperation
	Operation that handles all actions on a single point. More...
class	PointSet
	Data structure which stores a set of points. More...
class	PointSetDataInteractor
	Implementation of the PointSetInteractor. More...
class	PointSetShapeProperty
	Enumeration property for point set rendering shapes. More...
class	PointSetSource
	Superclass of all classes generating point sets (instances of class mitk::PointSet) as output. More...
class	PointSetToPointSetFilter
	Superclass of all classes/algorithms having one or more PointSets as input and output. More...
class	PointSetVtkMapper2D
	Vtk-based 2D mapper for PointSet. More...
class	PointSetVtkMapper3D
	Vtk-based 3D mapper for PointSet. More...
struct	PreferenceListReaderOptionsFunctor
	Option callback functor with a preference list/ black list option selection strategy. More...
class	ProgressBar
	Sending a message to the application's ProgressBar. More...
class	ProgressBarImplementation
	GUI-independent interface for all GUI-dependent implementations of a progress bar. More...
class	PropertyAliases
	Implementation of the IPropertyAliases service interface. More...
class	PropertyDescriptions
	Implementation of the IPropertyDescriptions service interface. More...
class	PropertyDeserialization
	Implementation of the IPropertyDeserialization service interface. More...
class	PropertyExtension
	Base class for all property extensions. More...
class	PropertyExtensions
	Implementation of the IPropertyExtensions service interface. More...
struct	PropertyFilter
	Consists of blacklist and whitelist entries. More...
class	PropertyFilters
	Implementation of the IPropertyFilters service interface. More...
class	PropertyKeyPath
	Class that can be used to specify nested or wild carded property keys. E.g. for the use in context of the property persistence service or the property relation service. Following assumptions are made /preconditions are defined: More...
class	InvalidPathNodeException
	Exception thrown when an invalid path node index is accessed. More...
class	PropertyList
	Key-value list holding instances of BaseProperty. More...
class	PropertyListReplacedObserver
	Observer that gets informed when a PropertyList with a given id is replaced during a Load() process. More...
class	PropertyObserver
	Base class for property observers providing callbacks for property changes and deletion. More...
class	PropertyView
	Read-only observer for a mitk::BaseProperty. More...
class	PropertyEditor
	Read-write observer for a mitk::BaseProperty. More...
class	PropertyPersistence
	Implementation of the IPropertyPersistence service interface. More...
class	PropertyPersistenceInfo
	Property persistence info. More...
class	PropertyRelationRuleBase
	Base class for defining and detecting property-based relations between data objects. More...
class	NoPropertyRelationException
class	PropertyRelations
	Concrete implementation of the IPropertyRelations service interface. More...
class	PropertyTransience
	Implementation of the IPropertyTransience service interface. More...
class	ProportionalTimeGeometry
class	ReferenceCountWatcher
	Keeps track of the reference count of an object even if it is destroyed. More...
class	RenderingManager
	Manager for coordinating the rendering process. More...
class	TestingRenderingManager
class	RenderingManagerFactory
	Factory interface for facilitating the usage of a platform-specific mitk::RenderingManager instance. More...
class	TestingRenderingManagerFactory
	Factory that creates TestingRenderingManager instances. More...
class	RenderingModeProperty
class	RenderWindow
	mitkRenderWindow integrates the MITK rendering mechanism into VTK and is NOT QT dependent More...
class	RenderWindowBase
	Base class of MITK RenderWindows. More...
class	RenderWindowFrame
	Renders a colored rectangle frame at the borders of a vtkRenderWindow. More...
class	ResliceMethodProperty
	Encapsulates the thick slices reslice method as an enumeration property. More...
class	RestorePlanePositionOperation
	Operation to restore a plane position defined by width, height, spacing, direction, and transform. More...
class	RGBToRGBACastImageFilter
	Image filter that casts RGB images to RGBA by adding a fully opaque alpha channel. More...
class	RotationOperation
	Operation that holds everything necessary for a rotation operation on mitk::BaseData. More...
class	ScaleOperation
	Operation to scale any mitk::BaseGeometry. More...
class	SinglePointDataInteractor
	Implementation of the single point interaction. More...
class	SlicedData
	Super class of data objects consisting of slices. More...
class	SlicedGeometry3D
	Describes the geometry of a data object consisting of slices. More...
class	SliceNavigationController
	Controls the selection of the slice the associated BaseRenderer will display. More...
class	SmartPointerProperty
	Property containing a smart pointer to an itk::Object. More...
class	SourceImageRelationRule
	Relation rule for referencing an image as the source of a destination entity. More...
class	StandaloneDataStorage
	Concrete DataStorage implementation that stores nodes in an in-memory adjacency list graph. More...
class	StandardFileLocations
	Provides methods to look for configuration and option files in standard locations. More...
class	StateMachineAction
	Represents an action that is executed after a certain event in the state machine mechanism. More...
class	StateMachineCondition
	Represents a condition, that has to be fulfilled in order to execute a state machine transition after a certain event. More...
class	StateMachineContainer
	Parses XML state machine descriptions and builds the state machine structure. More...
class	StateMachineState
	Represents a state of a state machine pattern. More...
class	StateMachineTransition
	Connects two states, and holds references to corresponding actions and conditions. More...
class	StatusBar
	Sends messages to the application's status bar. More...
class	StatusBarImplementation
	GUI-independent interface for all GUI-dependent implementations of a status bar. More...
class	StdFunctionCommand
	ITK command that uses std::function objects as filter and action callbacks. More...
class	Stepper
	Helper class to step through a list. More...
class	StorageThreadDispatcherBase
	Abstract base class for dispatching tasks to the thread that owns DataStorage. More...
class	StringProperty
	Property for storing string values. More...
class	SubImageSelector
	Base class of all classes providing access to parts of an image. More...
class	Surface
	Data class for storing polygonal surfaces (vtkPolyData). More...
class	SurfaceOperation
	Operation that stores polydata for changing surfaces. More...
class	SurfaceSource
	Superclass of all classes generating surfaces (instances of class Surface) as output. More...
class	SurfaceToImageFilter
	Converts surface data to pixel data. More...
class	SurfaceToSurfaceFilter
	Superclass of all classes getting surfaces (instances of class Surface) as input and generating surfaces as output. More...
class	SurfaceVtkMapper2D
	Vtk-based mapper for cutting 2D slices out of Surfaces. More...
class	SurfaceVtkMapper3D
	Vtk-based mapper for Surfaces. More...
class	TemporalJoinImagesFilter
	Filter that fuses n input images into a single image with n time points. More...
class	TemporoSpatialStringProperty
	Property for storing string values resolved by time step and slice index. More...
class	TestManager
	Manages the counting of passed and failed sub-tests within a test run. More...
class	ThinPlateSplineCurvedGeometry
	Thin-plate-spline-based landmark-based curved geometry. More...
class	TimeGeometry
class	TimeNavigationController
	Controls the time-related properties of the time stepper, according to the given input world time geometry. More...
class	TransferFunction
	Wrapper for VTK scalar opacity, gradient opacity, and color transfer functions. More...
class	TransferFunctionInitializer
	Wrapper class for VTK scalar opacity, gradient opacity, and color transfer functions. More...
class	TransferFunctionProperty
	Property for storing a mitk::TransferFunction. More...
class	UIDGenerator
	Generates unique identifier strings. More...
class	UIDManipulator
	Change the unique ID of an mitk::Identifiable. More...
class	UndoController
	Controller that manages undo/redo operations by delegating to an UndoModel. More...
class	UndoModel
	Abstract superclass for all undo models. More...
class	Vector
	MITK vector type extending itk::Vector with additional constructors and conversions. More...
struct	VectorPropertyDataType
	Helper trait for VectorProperty to determine a good ITK class name prefix. More...
class	VectorProperty
	Property for storing a std::vector of values. More...
struct	VectorPropertyDataType< double >
struct	VectorPropertyDataType< int >
class	VerboseLimitedLinearUndo
	A limited linear undo model providing GUI elements with stack status information. More...
class	VideoRecorder
	Record the contents of a render window as video using FFmpeg as external command-line application. More...
class	VolumeCalculator
	Calculates the volume of a mitk::Image. More...
class	VtkEventAdapter
	Generates MITK interaction events from VTK render window interactor events. More...
class	vtkEventProvider
	Integrates into the VTK event mechanism to generate MITK-specific events. More...
class	VtkInteractorStyle
	Implements the handling of events that are missing for MITK interaction. More...
class	VtkInterpolationProperty
	Encapsulates the VTK interpolation enumeration as an EnumerationProperty. More...
class	VtkLayerController
	Manages the VTK layer hierarchy of a vtkRenderWindow. More...
class	VtkLoggingAdapter
	Adapter that redirects VTK logging output to the MITK logging system. More...
class	VtkMapper
	Base class of all VTK-based Mappers for displaying primitives using VTK functionality. More...
class	VtkPropRenderer
	Organizes the MITK rendering process within the VTK rendering pipeline. More...
class	VtkRepresentationProperty
	Encapsulates the VTK representation enumeration as an EnumerationProperty. More...
class	VtkResliceInterpolationProperty
	Encapsulates the VTK reslice interpolation enumeration as an EnumerationProperty. More...
class	VtkScalarModeProperty
	Encapsulates the VTK scalar mode enumeration as an EnumerationProperty. More...
class	VtkWidgetRendering
	Mechanism for rendering a vtkWidget in the foreground of a RenderWindow. More...
class	WeakPointer
	A weak pointer that observes an itk::Object without preventing its deletion. More...
class	WeakPointerProperty
	Property containing a weak (non-owning) pointer to an itk::Object. More...
class	XML2EventParser
	Generates a list of InteractionEvents by parsing an XML file. More...
class	NodeSelectionService
	Implementation of the INodeSelectionService interface. More...
class	FileReaderWriterBase
	Common base class for file reader and writer implementations. More...
class	Geometry3DToXML
class	ImageVtkLegacyIO
	Reader and writer for VTK legacy structured points image format. More...
class	ImageVtkXmlIO
	Reader and writer for VTK XML image data format (.vti). More...
struct	MimeTypeTrackerTypeTraits
	Custom traits for tracking MimeType objects via CppMicroServices ServiceTracker. More...
class	MimeTypeProvider
	Implementation of IMimeTypeProvider that tracks MIME type services. More...
class	PointSetReaderService
class	PointSetWriterService
class	Preferences
	Implementation of the IPreferences interface. More...
class	PreferencesService
	Implementation of the IPreferencesService interface. More...
class	ProportionalTimeGeometryToXML
class	RawImageFileReaderService
	Reader for raw (headerless) binary image files. More...
class	SurfaceStlIO
	Reader and writer for STL (Stereolithography) surface files. More...
class	SurfaceVtkIO
class	SurfaceVtkLegacyIO
	Reader and writer for VTK legacy poly data surface format. More...
class	SurfaceVtkXmlIO
	Reader and writer for VTK XML poly data surface format (.vtp). More...
class	XMLPreferencesStorage
	XML file-backed implementation of IPreferencesStorage. More...
class	InteractionTestHelper
	Creates everything needed to load and playback interaction events. More...
class	RenderingTestHelper
class	TestCaller
	A test caller for parameterized tests. More...
class	TestFixture
	Test fixture for parameterized tests. More...
class	TestFailedException
	Indicate a failed test. More...
class	TestNotRunException
	Specialized mitk::Exception for skipped tests. More...
class	AffineBaseDataInteractor3D
	Affine interaction with mitk::BaseGeometry. More...
class	AffineImageCropperInteractor
	Affine interaction with objects in 3D windows for image cropping. More...
class	BoundingObject
	Abstract superclass of all bounding objects (cylinder, cuboid, cone, ellipsoid, etc.). More...
class	BoundingObjectGroup
	Group object that contains several mitk::BoundingObject instances. More...
class	CellOperation
	Operation that holds everything necessary for an operation on a cell. More...
class	ClippingPlaneInteractor3D
	Specialized interactor for translating and rotating clipping planes in 3D. More...
class	ColorSequence
	Abstract interface for generating a sequence of distinguishable colors. More...
class	ColorSequenceCycleH
	Generates ~36 distinguishable colors by cycling through HSV space. More...
class	ColorSequenceRainbow
	Predefined rainbow color sequence with eight distinguishable colors. More...
class	CompressedImageContainer
	Stores a compressed copy of a mitk::Image using LZ4 compression. More...
class	Cone
	Bounding object shaped as a cone. More...
class	Cuboid
	Bounding object shaped as a cuboid (axis-aligned box). More...
class	Cylinder
	Bounding object shaped as a cylinder. More...
class	DataStorageSelection
	Manages a selection of DataNode objects from a DataStorage. More...
class	Ellipsoid
	Bounding object shaped as an ellipsoid. More...
class	GridRepresentationProperty
	Enumeration property for grid representation types. More...
class	GridVolumeMapperProperty
	Enumeration property for volume mapper types used with unstructured grids. More...
class	LabeledImageLookupTable
	Lookup table for 2D rendering of labeled (segmented) images. More...
class	LabeledImageVolumeCalculator
	Calculates the volume and centroid for each label in a labeled image. More...
class	LineOperation
	Operation that holds everything necessary for an operation on a line. More...
class	LookupTableSource
	Base class for all process objects that produce a mitk::LookupTable as output. More...
class	MultiStepper
	Coordinates multiple Stepper instances to step through in parallel. More...
class	Plane
	Bounding object representing a flat plane surface. More...
class	SurfaceDeformationDataInteractor3D
	Interactive deformation of surface meshes in 3D render windows. More...
class	VideoSource
	Abstract base class for acquiring video frame data. More...
class	AutoSelectingDICOMReaderService
class	ClassicDICOMSeriesReaderService
class	DICOMTagsOfInterestService
	DICOM tags of interest service. More...
class	ManualSelectingDICOMReaderService
class	SimpleVolumeDICOMSeriesReaderService
class	DICOMImageIOActivator
	Module activator for the DICOM Image IO module. More...
class	BaseDICOMReaderService
	Base class for service wrappers that make DICOMFileReader from the DICOM module usable. More...
class	ClassicDICOMSeriesReader
	Sorting and grouping like mitk::DicomSeriesReader until 2013. More...
class	DICOMCodeSequence
	Represents a DICOM Code Sequence with value, scheme, and meaning. More...
class	DICOMCodeSequenceWithModifiers
	Represents a DICOM Code Sequence with optional modifiers. More...
struct	DICOMDatasetFinding
	Result structure for DICOMDatasetAccess::GetTagValueAsString. More...
class	DICOMDatasetAccess
	Interface to datasets that is presented to sorting classes such as DICOMDatasetSorter. More...
class	DICOMDatasetAccessingImageFrameInfo
	Defines an abstract base class for DICOM image frame infos with data access. More...
class	DICOMDatasetSorter
	The sorting/splitting building-block of DICOMITKSeriesGDCMReader. More...
class	DICOMDCMTKTagScanner
	Encapsulates the tag scanning process for a set of DICOM files. More...
class	DICOMFileReader
	Interface for DICOM readers that produce mitk::Images. More...
class	DICOMFileReaderSelector
	Simple best-reader selection. More...
class	DICOMGDCMImageFrameInfo
	The dataset access implementation for DICOMITKSeriesGDCMReader, based on GDCM. More...
class	DICOMGDCMTagCache
	Tag cache implementation used by the DICOMGDCMTagScanner. More...
class	DICOMGDCMTagScanner
	Encapsulates the tag scanning process for a set of DICOM files. More...
class	DICOMGenericImageFrameInfo
	A generic storage class for image frame info with data access. More...
class	DICOMGenericTagCache
	Generic tag cache implementation using DICOMGenericImageFrameInfo. More...
struct	DICOMCachedValueInfo
	Stores cached DICOM tag value information for a specific slice. More...
class	DICOMCachedValueLookupTable
	Lookup table mapping slice indices to cached DICOM tag value information. More...
class	DICOMImageBlockDescriptor
	Output descriptor for DICOMFileReader. More...
class	DICOMImageFrameInfo
	Describes a frame within a DICOM file. More...
struct	DICOMIOMetaInformationPropertyConstants
	Constants for property key paths used to store DICOM I/O meta information. More...
class	DICOMITKSeriesGDCMReader
	Flexible reader based on itk::ImageSeriesReader and GDCM, for single-slice modalities like CT, MR, PET, CR, etc. More...
class	DICOMReaderConfigurator
	Too-simple factory to create DICOMFileReaders. More...
class	DICOMSortByTag
	Compare two datasets by the value of a single tag (for use in DICOMTagBasedSorter). More...
class	DICOMSortCriterion
	A tag based sorting criterion for use in DICOMTagBasedSorter. More...
class	DICOMTag
	Representation of a DICOM tag. More...
class	DICOMTagBasedSorter
	Sort DICOM datasets based on configurable tags. More...
class	DICOMTagCache
	Abstract base class for caching DICOM tag values scanned from files. More...
class	DICOMTagPath
	Class used to identify (nested) attributes in a DICOM dataset. More...
class	DICOMTagScanner
	Abstracts the tag scanning process for a set of DICOM files. More...
class	DICOMTagsOfInterestAddHelper
	Helper class to ensure DICOM tags of interest are registered at IDICOMTagsOfInterest services. More...
class	EquiDistantBlocksSorter
	Split inputs into blocks of equidistant slices (for use in DICOMITKSeriesGDCMReader). More...
class	GantryTiltInformation
	Gantry tilt analysis result. More...
class	IDICOMTagsOfInterest
	Interface of DICOM tags of interest service. More...
class	ITKDICOMSeriesReaderHelper
	Helper class that uses ITK's ImageSeriesReader to load DICOM images. More...
class	NormalDirectionConsistencySorter
	Makes sure that the order of files is along the image plane normals. More...
class	SortByImagePositionPatient
	Sort by distance of image origin along image normal (for use in DICOMTagBasedSorter). More...
class	ThreeDnTDICOMSeriesReader
	Extends DICOMITKSeriesGDCMReader by sorting/grouping into 3D+t image blocks. More...
class	DicomSeriesReader
class	DICOMPMIO
	Read and write DICOM Parametric Map objects. More...
class	MitkDICOMPMIOMimeTypes
	Provides the custom mime types for dicom qi objects loaded with DCMQI. More...
class	ParamapPresetsParser
	Parser for DICOM Parametric Map (PM) preset definitions stored in XML format. More...
class	DICOMPMPropertyHelper
	Helper for setting DICOM Parametric Map (PM) properties on derived images. More...
class	DICOMQIPropertyHelper
	Helper for propagating DICOM properties from source to derived images. More...
class	TestDICOMLoading
	Utility class for testing DICOM file loading and comparing loaded image properties. More...
class	Gizmo
	A geometry manipulation "gizmo" for interactive 3D transformations. More...
class	GizmoInteractor
	Data interactor for manipulating object geometry via a Gizmo widget. More...
class	GizmoMapper2D
	2D mapper for mitk::Gizmo. More...
class	GizmoObjectFactory
	Registers mappers and assigns default properties for mitk::Gizmo. More...
class	BilateralFilter
	Edge-preserving smoothing filter using bilateral filtering. More...
class	ExtractImageFilter
	Extracts a 2D slice from a 3D image. More...
class	HistogramStatisticsCalculator
	Computes histogram-based statistics: Uniformity, UPP, Entropy, and Median. More...
class	HotspotMaskGenerator
	Generates a spherical mask centered on the hotspot (brightest region) of an image. More...
class	IgnorePixelMaskGenerator
	Generates a binary mask that excludes pixels with a specified intensity value. More...
class	ImageMaskGenerator
	Generates a mask from an existing mitk::Image for use in statistics calculations. More...
class	ImageStatisticsCalculator
	Computes image statistics, optionally restricted by one or two masks. More...
struct	ImageStatisticsConstants
	Provides string constants for the names of image statistics. More...
class	ImageStatisticsContainer
	Container class for storing a StatisticsObject for each time step. More...
class	ImageStatisticsContainerManager
	Manages lookup of ImageStatisticsContainer nodes in a DataStorage. More...
class	LabelStatisticsImageFilter
	Computes per-label image statistics including histogram, moments, and entropy. More...
class	MaskGenerator
	Abstract base class for all mask generators used in image statistics. More...
class	MaskUtilities
	Utility class for validating and adapting masks for use with images. More...
class	MultiLabelMaskGenerator
	Generates masks for statistics computation from multi-label segmentations. More...
class	PlanarFigureMaskGenerator
	Derived from MaskGenerator. This class is used to convert a mitk::PlanarFigure into a binary image mask. More...
class	PointSetDifferenceStatisticsCalculator
	Class for calculating the difference between two corresponding point sets. The user can access the single distances between corresponding points as well as a complete statistic (mean, sd, rms, median, max, min) The point sets must be of equal size! More...
class	PointSetStatisticsCalculator
	Class for calculating statistics (like standard derivation, RMS, mean, etc.) for a PointSet. More...
class	StatisticsImageFilter
	Compute comprehensive image statistics including moments, histogram, entropy, and median. More...
class	StatisticsToImageRelationRule
	Relation rule that connects an ImageStatisticsContainer to its source image. More...
class	StatisticsToMaskRelationRule
	Relation rule that connects an ImageStatisticsContainer to its mask. More...
class	IOExtActivator
	Module activator for the IOExt module. More...
class	IOExtObjectFactory
	Object factory for extended IO types. More...
class	ObjFileReaderService
	Reader service for loading surfaces from Wavefront OBJ files. More...
class	PlyFileReaderService
	Reader service for loading surfaces from PLY format files. More...
class	PlyFileWriterService
	Writer service for saving surfaces in PLY format. More...
class	PseudoLogStream
	Stream-based log message builder for the MITK log mechanism. More...
class	NullLogStream
	No-op log stream that silently discards all input. More...
class	LogBackendBase
	Abstract interface for log backends that can be registered in the MITK log mechanism. More...
class	LogBackendCout
	Default console backend of the MITK log mechanism. More...
class	LogBackendText
	Abstract superclass for text-based log backends. More...
struct	LogMessage
	A single log message (log event) of the MITK log mechanism. More...
class	EnhancedPointSetVtkMapper3D
	Alternative Vtk-based 3D mapper for mitk::PointSet. More...
class	SplineVtkMapper3D
	VTK-based mapper for rendering splines through point sets in 3D. More...
class	VolumeMapperVtkSmart3D
	VTK-based mapper for volume rendering of 3D image data. More...
class	MultiModalAffineDefaultRegistrationAlgorithm
	Default multimodal affine registration algorithm for MITK. More...
class	MultiModalRigidDefaultRegistrationAlgorithm
	Default multimodal rigid registration algorithm for MITK. More...
class	MultiModalTranslationDefaultRegistrationAlgorithm
	Default multimodal translation-only registration algorithm for MITK. More...
class	MAPRegistrationWrapperIO
	Provides IO capability for MatchPoint registration wrappers. More...
class	MAPRegistrationWrapperSerializer
	Serializes mitk::MAPRegistrationWrapper for mitk::SceneIO. More...
struct	ImageMappingInterpolator
	Enumeration of interpolation strategies for image mapping operations. More...
class	MAPAlgorithmHelper
	Helper class for bridging between MITK data objects and MatchPoint registration algorithms. More...
class	MAPRegistrationWrapper
	Wrapper class that adapts MatchPoint registration objects to the MITK data model. More...
class	MAPRegistrationWrapperObjectFactory
	Factory that registers mappers and default properties for MAPRegistrationWrapper objects in MITK. More...
class	MaskedAlgorithmHelper
	Helper class for setting MITK images as masks on MatchPoint registration algorithms. More...
class	RegEvalStyleProperty
	Enumeration property defining the visualization style for registration evaluation. More...
class	RegEvaluationMapper2D
	Mapper to resample and display 2D slices of registration evaluation visualization. More...
class	RegEvaluationObject
	Data container holding all information needed for visual evaluation of a registration. More...
class	RegEvaluationObjectFactory
	Factory that registers the mapper needed for rendering RegEvaluationObject instances in MITK. More...
class	RegEvalWipeStyleProperty
	Enumeration property defining the wipe style for the Wipe registration evaluation mode. More...
class	MITKRegistrationHelper
	Static utility class providing helper methods for working with MatchPoint registrations in MITK. More...
class	RegistrationManipulationInteractor
	Data interactor for mouse-based registration manipulation in 2D render windows. More...
class	MITKRegistrationWrapperMapper2D
class	MITKRegistrationWrapperMapper3D
class	MITKRegistrationWrapperMapperBase
class	RegVisColorStyleProperty
	Enumeration property defining the color style for registration visualization. More...
class	RegVisDirectionProperty
	Enumeration property defining the mapping direction for registration visualization. More...
class	RegVisStyleProperty
	Enumeration property defining the visual representation style for registrations. More...
class	TimeFramesRegistrationHelper
class	BinaryImageToLabelSetImageFilter
	Converts an binary image to a MultiLabelSegmentation. The amount of labels equals the connected components. More...
class	ChiSquareFitCostFunction
	Single-valued cost function that computes the chi-square statistic. More...
class	ConcreteModelFactoryBase
	Template base class for model factories that operate on a specific model type. More...
class	ConcreteModelParameterizerBase
	Template base class for parameterizers operating on a specific model type. More...
class	ConstraintCheckerBase
	Base class for constraint checkers used in model fitting. More...
class	ConstraintCheckerInterface
	Interface for all constraint checkers used in model fitting. More...
class	DummyModelFitFunctor
	A no-op model fit functor that returns initial parameters without optimization. More...
class	ExpDecayOffsetModel
	Exponential decay model with baseline offset: y(x) = y0 * exp(-k*x) + y_bl. More...
class	ExpDecayOffsetModelFactory
	Factory for creating ExpDecayOffsetModel instances and their parameterizers. More...
class	ExpDecayOffsetModelParameterizer
	Parameterizer for the ExpDecayOffsetModel providing default initial values. More...
class	ExponentialDecayModel
	Simple model of exponential decay: y(x) = y-intercept * exp(-x/lambda). More...
class	ExponentialDecayModelFactory
	Factory class for creating ExponentialDecayModel instances and their parameterizers. More...
class	ExponentialDecayModelParameterizer
	Parameterizer for the ExponentialDecayModel providing default initial values. More...
class	ExponentialSaturationModel
	Exponential saturation model with bolus arrival time. More...
class	ExponentialSaturationModelFactory
	Factory for creating ExponentialSaturationModel instances and their parameterizers. More...
class	ExponentialSaturationModelParameterizer
	Parameterizer for the ExponentialSaturationModel providing default initial values. More...
class	FormulaParserException
	Exception class for all exceptions generated in the FormulaParser module. More...
class	FormulaParser
	Evaluates simple mathematical formula strings (e.g. "3.5 + 4 * x * sin(x) - 1 / 2"). More...
class	GaussianNoiseFunctor
	Pixel functor that adds Gaussian noise to a pixel value. More...
class	GenericParamModel
	Model that uses a user-specified formula string as its model function. More...
class	GenericParamModelFactory
	Factory for creating GenericParamModel instances and their parameterizers. More...
class	GenericParamModelParameterizer
	Parameterizer for the GenericParamModel. More...
class	ImageBasedParameterizationDelegate
	Parameterization delegate that uses images as sources for initial parameter values. More...
struct	IModelFitProvider
	The common interface for all model providers for model fitting. More...
class	IndexedValueFunctorBase
class	IndexedValueFunctorPolicy
	Policy class adapting an IndexedValueFunctorBase for use with itkMultiOutputNaryFunctorImageFilter. More...
class	InitialParameterizationDelegateBase
class	LevenbergMarquardtModelFitFunctor
	Model fit functor that uses the Levenberg-Marquardt optimization algorithm. More...
class	LinearModel
	Model representing a simple linear function: y(x) = b * x + y0. More...
class	LinearModelFactory
	Factory class for creating LinearModel instances and their parameterizers. More...
class	MaskedDynamicImageStatisticsGenerator
class	ModelBase
	Base class for (dynamic) models. More...
class	ModelBasedValueFunctorBase
	Abstract functor base class for model-based indexed value computation. More...
class	ModelDataGenerationFunctor
class	ModelFactoryBase
	Abstract base class for model factories in the model fitting framework. More...
struct	ModelFitConstants
class	ModelFitCostFunctionInterface
	Interface class that is implemented by all cost functions used in model fitting. More...
class	ModelFitFunctorBase
	Abstract base class for functors that perform model fitting. More...
class	ModelFitFunctorPolicy
	Policy class that combines a ModelFitFunctorBase and a ModelParameterizerBase for pixel-wise fitting. More...
class	ModelFitInfoSignalGenerationFunctor
class	PlotDataCurve
struct	ModelFitPlotData
class	ModelFitProviderBase
	Base class for model fit provider. More...
class	ModelFitResultRelationRule
class	ModelGenerator
	Utility class for creating model factories and parameterizers from model class IDs. More...
class	ModelParameterizerBase
class	ModelSignalImageGenerator
class	mitkModelTestFixture
	Test fixture base class for model fit unit tests. More...
class	ModelTraitsInterface
	Pure virtual interface that defines the traits (metadata) of a model used for fitting. More...
class	MVConstrainedCostFunctionDecorator
	This class is used to add constraints to any multi valued model fit cost function. More...
class	MVModelFitCostFunction
	Base class for all model fit cost functions that return a vector of cost values. More...
class	NormalizedSumOfSquaredDifferencesFitCostFunction
	Single-valued cost function computing the normalized sum of squared differences. More...
class	ParameterFitImageGeneratorBase
class	PixelBasedParameterFitImageGenerator
class	ReducedChiSquareFitCostFunction
	Single-valued cost function that computes the reduced chi-square statistic. More...
class	ROIBasedParameterFitImageGenerator
class	ScalarListLookupTable
	Data class for model fit properties that store a map of lists (e.g. static parameters). More...
class	ScalarListLookupTablePropertySerializer
	Serializer for the ScalarListLookupTableProperty so it can be written and read from file. More...
class	SimpleBarrierConstraintChecker
	This class implements constraints as simple barrier functions. More...
class	SimpleFunctorBase
	Abstract base class for simple functors used with itkMultiOutputNaryFunctorImageFilter. More...
class	SimpleFunctorPolicy
	Policy class adapting a SimpleFunctorBase for use with itkMultiOutputNaryFunctorImageFilter. More...
class	SquaredDifferencesFitCostFunction
	Multi-valued cost function that computes the element-wise squared differences. More...
class	SumOfSquaredDifferencesFitCostFunction
	Single-valued cost function that computes the sum of squared differences (SSD). More...
class	SVModelFitCostFunction
	Base class for all model fit cost functions that return a single scalar cost value. More...
class	TestModel
	Simple linear test model used to verify factory and framework functionality. More...
class	TestModelFactory
	Factory for creating TestModel instances, used for testing the model fit framework. More...
class	ThreeStepLinearModel
	Piecewise linear model with three segments and two transition points. More...
class	ThreeStepLinearModelFactory
	Factory for creating ThreeStepLinearModel instances and their parameterizers. More...
class	ThreeStepLinearModelParameterizer
	Parameterizer for the ThreeStepLinearModel providing default initial values. More...
class	TwoStepLinearModel
	Piecewise linear model with two segments joined at a transition point. More...
class	TwoStepLinearModelFactory
	Factory for creating TwoStepLinearModel instances and their parameterizers. More...
class	TwoStepLinearModelParameterizer
	Parameterizer for the TwoStepLinearModel providing default initial values. More...
class	ValueBasedParameterizationDelegate
class	MitkDICOMSEGIOMimeTypes
	Provides the custom mime types for dicom qi objects loaded with DCMQI. More...
class	DICOMSegmentationIO
	Read and write MultiLabelSegmentation objects as DICOM Segmentation files. More...
class	LegacyLabelSetImageIO
	Reader for legacy LabelSetImage files (older NRRD-based format). More...
class	MultiLabelSegmentationIO
	Read and write MultiLabelSegmentation objects to/from NRRD files. More...
class	MultiLabelSegmentationSerializer
	Serializes mitk::MultiLabelSegmentation for mitk::SceneIO. More...
class	MultiLabelSegmentationStackNiftiWriter
	Write a MultiLabelSegmentation as stacks of NIfTI files with a mitklabel.json metadata file. More...
class	MultiLabelSegmentationStackReader
	Read a MultiLabelSegmentation from a mitklabel.json file and its associated image files. More...
class	MultiLabelSegmentationStackWriterBase
	Base class for writers that export MultiLabelSegmentation to a stack of image files with a metadata file. More...
struct	DICOMSegmentationConstants
	Collection of DICOM tag path constants for DICOM Segmentation objects. More...
class	DICOMSegStrictModeException
	Thrown when a DICOM SEG write is rejected in strict mode because the segmentation is missing contract items required for a valid SEG. More...
class	DICOMSegmentationPropertyHelper
	Helpers around the DICOM SEG property contract on MultiLabelSegmentation. More...
class	Label
	A data structure describing a label in a multi-label segmentation. More...
class	LabelHighlightGuard
	RAII guard for managing label highlighting on data nodes. More...
class	MultiLabelSegmentation
	MultiLabelSegmentation class for handling labels and layers in a segmentation session. More...
class	LabelSetImageToSurfaceFilter
	Filter that generates surface meshes from a MultiLabelSegmentation image. More...
class	LabelSetImageToSurfaceThreadedFilter
	Threaded filter that generates a surface mesh from a label in a MultiLabelSegmentation. More...
class	LabelSetImageVtkMapper2D
	Mapper to resample and display 2D slices of a 3D labelset image. More...
class	LabelSuggestionHelper
	Helper class for handling label suggestions with constraint checking. More...
class	AnyLabelEvent
	Base event class for all label-related events in a MultiLabelSegmentation. More...
class	LabelAddedEvent
class	LabelModifiedEvent
class	LabelRemovedEvent
class	LabelsChangedEvent
	Event emitted once after a batch of label changes in a MultiLabelSegmentation. More...
class	AnyGroupEvent
	Base event class for all group-related events in a MultiLabelSegmentation. More...
class	GroupAddedEvent
class	GroupModifiedEvent
class	GroupRemovedEvent
class	MultiLabelIOHelper
	The MultiLabelIOHelper is a static helper class that supports serialization of mitk::MultiLabelSegmentation. More...
class	MultiLabelSegmentationVtkMapper3D
	3D mapper for mitk::MultiLabelSegmentation. More...
class	MultiLabelSurfaceNetsExtractor
	Extracts label-boundary polygonal surfaces from a multi-label segmentation group image using vtkSurfaceNets3D. More...
class	SegSourceImageRelationRule
	Relation rule for referencing a segmentation to a source-image derivations. More...
class	MultilabelObjectFactory
	Object factory that registers mappers and default properties for MultiLabelSegmentation. More...
class	IPersistable
	Abstract interface for objects that can persist their state to and from files. More...
class	PersistenceService
	Concrete implementation of the IPersistenceService interface. More...
class	PropertyListsXmlFileReaderAndWriter
	Reads and writes collections of named PropertyList objects to and from XML files. More...
class	PersistenceActivator
	Module activator that installs the PersistenceService. More...
struct	HALFLIFECONSTANTS
	Physical half-life constants for common PET radionuclides. More...
class	SUVHelperException
	Base class for failures originating from the SUV calculation helpers. More...
class	MissingDICOMPropertyException
	A required DICOM property is missing on the input data. More...
class	InvalidDICOMPropertyValueException
	A DICOM property is present but holds a value the helper does not understand. More...
class	MultiItemRadiopharmaceuticalSequenceException
	A multi-item Radiopharmaceutical Information Sequence (0054,0016) was supplied without an explicit tracer selection. More...
class	BenchmarkAdaptationRequiredException
	Base class for failures triggered by a benchmark-recommended adaptation that the active policy refuses to perform. More...
class	ImplausibleRadionuclideDoseException
	Radionuclide Total Dose (0018,1074) is implausible as Bq and would have been reinterpreted as MBq, but the active policy is Strict. More...
class	VendorEmpiricalDecayFallbackRefusedException
	Strategy DC=START would have been resolved via a vendor-specific empirical fallback (Steps 3 / 4), but the active policy is Strict. More...
class	UnsupportedPETUnitsException
	Tag (0054,1001) Units holds a value the SUV pipeline cannot interpret. More...
class	MissingPhilipsPETScaleException
	(0054,1001) Units == "CNTS" and the manufacturer is Philips, but neither of the two Philips private scale factors is present. More...
class	AmbiguousPatientSexAdaptationRefusedException
	Ambiguous patient sex would have been resolved as the IBSI mean of the male- and female-specific normalization, but the active policy is Strict. More...
class	AmbiguousDecayTimingException
	Acquisition / radiopharmaceutical-injection timing cannot be reconciled. More...
class	InvalidDecayTimeMapException
	A user-supplied per-(timestep, slice) decay-time override map is not a complete and well-formed match for the input image geometry. More...
class	InvalidDecayTimeOverrideException
	A uniform decay-time override value is not a usable decay duration. More...
class	ConflictingDecayTimeOverrideException
	Raised when a uniform decay-time override and a per-(timestep, slice) decay-time override map are set simultaneously. More...
struct	DecayCorrectionInfo
	Result of DeduceDecayCorrection(). More...
struct	RadiopharmaceuticalInfo
	Per-item radiopharmaceutical metadata pulled from the Radiopharmaceutical Information Sequence (0054,0016). More...
class	SUVFunctorPolicy
	Generic functor policy for computing SUV on a per-voxel basis. More...
class	SUVImageFilter
	Image-to-image filter that converts a PET image into a SUV image. More...
struct	SUVInputModel
	Classification of how a PET image's raw pixel values relate to the SUV pipeline. More...
class	MissingSUVInputException
	A required SUV normalization input is missing or invalid. More...
struct	SUVNormalizationInputs
	Inputs available to a SUV normalization strategy. More...
class	SUVNormalizationStrategy
	Strategy that computes the variant-specific scale numerator used by the SUV scale factor. More...
class	BodyWeightStrategy
	Body-weight-normalized SUV strategy (SUVbw). More...
class	LeanBodyMassJanmahasatianStrategy
	Lean-body-mass-normalized SUV strategy using the Janmahasatian (2005) formula (SUVlbm-Janma). More...
class	LeanBodyMassJames128Strategy
	Lean-body-mass-normalized SUV strategy using the James (1976) "James 128" formula (SUVlbm-James128). More...
class	IdealBodyWeightStrategy
	Ideal-body-weight-normalized SUV strategy (SUVibw), Sugawara (1999) sex-specific formula. More...
class	BodySurfaceAreaStrategy
	Body-surface-area-normalized SUV strategy (SUVbsa). More...
class	AIFBasedModelBase
	Base class for all pharmacokinetic perfusion models that use an Arterial Input Function (AIF). More...
class	AIFBasedModelParameterizerBase
	Base class for parameterizers of pharmacokinetic models that use an Arterial Input Function (AIF). More...
class	AreaUnderFirstMomentDescriptionParameter
	Curve description parameter that computes the Area Under the First Moment Curve (AUMC). More...
class	AreaUnderTheCurveDescriptionParameter
	Curve description parameter that computes the Area Under the Curve (AUC). More...
class	AterialInputFunctionGenerator
	Computes the Arterial Input Function (AIF) from a 4D dynamic image and an artery mask. More...
class	ConcentrationCurveGenerator
	Converts a 4D MR signal image into a 4D contrast agent concentration image. More...
class	ConcreteAIFBasedModelFactory
	Template factory class for AIF-based pharmacokinetic models. More...
class	ConvertT2ConcentrationFunctor
	Binary functor that converts T2-weighted MR signal values to contrast agent concentration. More...
class	ConvertToConcentrationAbsoluteFunctor
	Binary functor that converts MR signal to concentration using absolute signal enhancement. More...
class	ConvertToConcentrationRelativeFunctor
	Binary functor that converts MR signal to concentration using relative signal enhancement. More...
class	ConvertToConcentrationTurboFlashFunctor
	Binary functor that converts TurboFLASH MR signal values to contrast agent concentration. More...
class	ConvertToConcentrationViaT1CalcFunctor
	Ternary functor that converts MR signal to concentration via T1 mapping using the variable flip angle method. More...
class	CurveDescriptionParameterBase
	Abstract base class for functors that compute descriptive scalar values for a time-concentration curve. More...
class	CurveParameterFunctor
	Functor that aggregates multiple CurveDescriptionParameterBase instances and computes all registered descriptors. More...
class	DescriptionParameterImageGeneratorBase
	Abstract base class for generators that produce parameter images from curve descriptors. More...
class	DescriptivePharmacokineticBrixModel
	Descriptive pharmacokinetic model for MR perfusion according to Brix et al. More...
class	DescriptivePharmacokineticBrixModelFactory
	Factory for the DescriptivePharmacokineticBrixModel. More...
class	DescriptivePharmacokineticBrixModelParameterizer
	Parameterizer for the DescriptivePharmacokineticBrixModel using a baseline image. More...
class	DescriptivePharmacokineticBrixModelValueBasedParameterizer
	Parameterizer for the DescriptivePharmacokineticBrixModel using a single baseline value. More...
class	ExtendedOneTissueCompartmentModel
	Implementation of the extended one-tissue compartment model for PET pharmacokinetics. More...
class	ExtendedOneTissueCompartmentModelFactory
	Factory for the ExtendedOneTissueCompartmentModel. More...
class	ExtendedOneTissueCompartmentModelParameterizer
	Parameterizer for the ExtendedOneTissueCompartmentModel. More...
class	ExtendedToftsModel
	Implementation of the Extended Tofts pharmacokinetic model using an Arterial Input Function. More...
class	ExtendedToftsModelFactory
	Factory for the ExtendedToftsModel. More...
class	ExtendedToftsModelParameterizer
	Parameterizer for the ExtendedToftsModel. More...
class	ImageGenerationHelper
	Helper class for generating a spatially homogeneous 4D dynamic image from a 1D curve. More...
class	MaximumCurveDescriptionParameter
	Curve description parameter that computes the maximum value of a curve. More...
class	MeanResidenceTimeDescriptionParameter
	Curve description parameter that computes the Mean Residence Time (MRT). More...
class	OneTissueCompartmentModel
	Implementation of the reversible one-tissue compartment model for PET pharmacokinetics. More...
class	OneTissueCompartmentModelFactory
	Factory for the OneTissueCompartmentModel. More...
class	OneTissueCompartmentModelParameterizer
	Parameterizer for the OneTissueCompartmentModel. More...
class	PixelBasedDescriptionParameterImageGenerator
	Generates pixel-wise curve descriptor images from a 4D dynamic image. More...
class	StandardToftsModel
	Implementation of the Standard Tofts pharmacokinetic model using an Arterial Input Function. More...
class	StandardToftsModelFactory
	Factory for the StandardToftsModel. More...
class	StandardToftsModelParameterizer
	Parameterizer for the StandardToftsModel. More...
class	TimeToPeakCurveDescriptionParameter
	Curve description parameter that computes the time to peak and the peak value. More...
class	TwoCompartmentExchangeModel
	Implementation of the two-compartment exchange model (2CXM) for MR perfusion pharmacokinetics. More...
class	TwoCompartmentExchangeModelFactory
	Factory for the TwoCompartmentExchangeModel. More...
class	TwoCompartmentExchangeModelFactoryBase
	Template base factory for TwoCompartmentExchangeModel variants. More...
class	TwoCompartmentExchangeModelParameterizer
	Parameterizer for the TwoCompartmentExchangeModel. More...
class	TwoTissueCompartmentFDGModel
	Implementation of the irreversible two-tissue compartment model for FDG PET pharmacokinetics. More...
class	TwoTissueCompartmentFDGModelFactory
	Factory for the TwoTissueCompartmentFDGModel (irreversible FDG model). More...
class	TwoTissueCompartmentFDGModelParameterizer
	Parameterizer for the TwoTissueCompartmentFDGModel (irreversible FDG model). More...
class	TwoTissueCompartmentModel
	Implementation of the reversible two-tissue compartment model for PET pharmacokinetics. More...
class	TwoTissueCompartmentModelFactory
	Factory for the TwoTissueCompartmentModel. More...
class	TwoTissueCompartmentModelFactoryBase
	Template base factory for TwoTissueCompartmentModel variants. More...
class	TwoTissueCompartmentModelParameterizer
	Parameterizer for the TwoTissueCompartmentModel. More...
class	PlanarFigureIO
	Read and write mitk::PlanarFigure objects to/from XML files. More...
class	PlanarFigureSerializer
	Serializes mitk::PlanarFigure for mitk::SceneIO. More...
class	ExtrudePlanarFigureFilter
	Extrude a planar figure along its normal to produce a 3D surface. More...
class	ImageToPlanarFigureFilter
	Superclass of all filters having one or more Images as input and generating PlanarFigures as output. More...
class	PlanarAngle
	Implementation of PlanarFigure representing an angle measurement. More...
class	PlanarArrow
	Implementation of PlanarFigure representing an arrow with two control points. More...
class	PlanarBezierCurve
	Implementation of PlanarFigure representing a Bezier curve. More...
class	PlanarCircle
	Implementation of PlanarFigure representing a circle. More...
class	PlanarCross
	Implementation of PlanarFigure modeling a cross with two orthogonal lines on a plane. More...
class	PlanarDoubleEllipse
	Implementation of PlanarFigure representing a double ellipse (annular ring). More...
class	PlanarEllipse
	Implementation of PlanarFigure representing an ellipse. More...
class	PlanarFigure
	Base-class for geometric planar (2D) figures, such as lines, circles, rectangles, polygons, etc. More...
class	PlanarFigureControlPointStyleProperty
	Defines the rendering style of control points for PlanarFigure objects. More...
class	PlanarFigureInteractor
	Interactor for creating, editing, and manipulating PlanarFigure objects. More...
class	PlanarFigureMapper2D
	OpenGL-based mapper to render display sub-class instances of mitk::PlanarFigure. More...
class	PlanarFigureObjectFactory
	Object factory for PlanarFigure types. More...
class	PlanarFigureSource
	Base class for all filters producing a PlanarFigure as output. More...
class	PlanarFigureToPlanarFigureFilter
	Base class for all filters with PlanarFigure input and PlanarFigure output. More...
class	PlanarFigureVtkMapper3D
	VTK-based mapper for rendering planar figures in 3D render windows. More...
class	PlanarFourPointAngle
	Implementation of PlanarFigure representing a four-point angle measurement. More...
class	PlanarLine
	Implementation of PlanarFigure representing a straight line segment. More...
class	PlanarPolygon
	Implementation of PlanarFigure representing a polygon. More...
class	PlanarRectangle
	Implementation of PlanarFigure representing an axis-aligned rectangle. More...
class	PlanarSubdivisionPolygon
	Implementation of PlanarFigure representing a subdivision polygon (smooth curve). More...
class	PythonContext
	Provides a Python interpreter context for executing Python code and interacting with MITK data like images. More...
struct	PipPackageInfo
	Describes a single resolved pip package. More...
struct	PipInstallGroup
	A set of packages that share the same pip options. More...
struct	PostInstallStep
	A Python command to run in the activated venv after pip install. More...
struct	PipInstallSpec
	Full specification for a pip installation run. More...
class	nnInteractiveTool
	Segmentation tool integrating the nnInteractive deep learning model. More...
class	TotalSegmentatorTool
	TotalSegmentator segmentation tool. More...
class	DataStorageInspectorGenerator
struct	IDataStorageInspectorProvider
	The common interface for all DataStorage inspector providers. More...
class	RenderWindowLayerController
class	RenderWindowViewDirectionController
struct	NodeSelectionConstants
	Constants for node selection preference keys. More...
class	RemeshFilter
	ITK/VTK-style filter that encapsulates the mitk::Remesh() function. More...
class	DataStorageBridge
	Thread-safe bridge between the REST API layer and MITK DataStorage. More...
class	ErrorResponse
	Helper class for generating RFC 9457 compliant error responses. More...
struct	RequestInfo
	Information about a REST API request. More...
struct	IRestServerService
	Service interface for the REST API server. More...
struct	SortSpec
	Sort specification for node query results. More...
struct	NodeQueryParams
	Query parameters for the GET /datastorage/nodes endpoint. More...
struct	PropertyQueryParams
	Query parameters for the GET /datastorage/nodes/{uid}/properties endpoint. More...
class	NodeUidMapper
	Maintains transient UID-to-DataNode mappings for the REST API. More...
struct	WorldBounds
struct	SelectedPositionInfo
	Position and world-bounds snapshot read atomically on the UI thread. More...
class	RenderWindowBridgeNoEditorException
	Thrown by bridge callbacks when the target editor instance is not open in the workbench. More...
class	RenderWindowBridgeUnknownWindowException
	Thrown by bridge callbacks when the window id is not known. More...
class	RenderWindowBridgeUnsupportedOperationException
	Thrown by bridge callbacks when the requested sub-resource does not apply to the addressed window (e.g. selected-slice on a 3D window). More...
class	RenderWindowBridgeRendererUnavailableException
	Thrown by bridge callbacks when a window exists but its renderer is currently unavailable (server-side state inconsistency). More...
struct	EditorInfo
struct	WindowInfo
struct	MxNWindowInfo
	Summary of a single MxN cell exposed via the REST window list. More...
struct	CameraState
struct	CameraPatch
struct	SliceBounds
struct	SliceState
class	RenderWindowBridge
	Bridge between the REST API server and the Qt/render-window layer. More...
class	RestServer
	HTTP REST server implementation. More...
struct	RestServerConfig
	Configuration parameters for the REST API server. More...
class	DataStorageController
	Handles all /api/v1/datastorage endpoints. More...
class	HealthController
	Handles health and info endpoints. More...
class	RenderingController
	Handles all /api/v1/rendering endpoints. More...
class	SwaggerController
	Serves Swagger UI and OpenAPI specification for API documentation. More...
class	ROIIO
	Read and write mitk::ROI objects to/from JSON files. More...
class	ROIIOModuleActivator
	Module activator for the ROI IO module. More...
class	ROISerializer
	Serializes mitk::ROI for mitk::SceneIO. More...
class	ROI
	A collection of region of interests (ROIs). More...
class	ROIMapper2D
	VTK-based mapper for rendering ROI elements in 2D slice views. More...
class	ROIMapper3D
	VTK-based mapper for rendering ROI elements in 3D views. More...
class	ROIMapperLocalStorage
	Common base class for both 2D and 3D ROI mapper local storages. More...
class	ROIObjectFactory
	Object factory that registers mappers and default properties for mitk::ROI. More...
class	RTDoseReaderService
	Reader service for DICOM files of modality RTDOSE. More...
class	RTPlanReaderService
	Reader service for DICOM files of modality RTPLAN. More...
class	RTStructureSetReaderService
	Reader service for DICOM files of modality RT Structure Set. More...
class	DICOMRTMimeTypes
	Provides MIME type definitions for DICOM-RT file types (RTDose, RTStruct, RTPlan). More...
class	DoseImageVtkMapper2D
	Mapper to resample and display 2D slices of a 3D image. More...
class	IsoDoseLevel
	Stores values needed for the representation/visualization of dose iso levels. More...
class	IsoDoseLevelSet
	Sorted set of dose iso levels for dose distribution visualization. More...
class	IsoDoseLevelSetProperty
	Property class that wraps an IsoDoseLevelSet for storage in a PropertyList. More...
class	IsoDoseLevelVectorProperty
	Property class that wraps an IsoDoseLevelVector for storage in a PropertyList. More...
struct	RTConstants
	Collection of string constants used as property names for radiotherapy dose data nodes. More...
struct	RTUIConstants
	String constants for RT dose visualization UI preferences. More...
struct	RTCTKEventConstants
	CTK event topic constants for RT dose visualization change notifications. More...
class	SceneFileReader
	Reader service for legacy MITK scene files (.mitk, ZIP archive). More...
class	SceneJsonFileReader
	Reader service for MITK JSON scene files (.mitkscene.json). More...
class	AbstractSceneReader
	Base class for scene-graph aware readers. More...
class	SceneIO
	Provides functionality to load and save MITK scene files (.mitk). More...
class	SceneJsonReader
	Reader for MITK JSON scene files (.mitkscene.json). More...
class	SceneReader
	Reads a MITK scene from an XML document and populates a DataStorage. More...
class	GeometryDataSerializer
	Serializes mitk::GeometryData for mitk::SceneIO. More...
class	ImageSerializer
	Serializes mitk::Image for mitk::SceneIO. More...
class	PointSetSerializer
	Serializes mitk::PointSet for mitk::SceneIO. More...
class	PropertyListDeserializer
	Deserializes a mitk::PropertyList from an XML file. More...
class	PropertyListDeserializerV1
	Deserializes a version 1 mitk::PropertyList from an XML file. More...
class	SceneReaderV1
	Version 1 implementation of the MITK scene reader. More...
class	SurfaceSerializer
	Serializes mitk::Surface for mitk::SceneIO. More...
class	BaseDataSerializer
	Base class for objects that serialize BaseData types to files. More...
class	BasePropertySerializer
	Base class for objects that serialize and deserialize BaseProperty types to/from XML. More...
class	EnumerationPropertySerializer
	Serializer for mitk::EnumerationProperty and its sub-classes. More...
class	LookupTablePropertySerializer
	Serializer for mitk::LookupTableProperty. More...
class	PropertyListSerializer
	Serializes a mitk::PropertyList to an XML file. More...
class	TransferFunctionPropertySerializer
	Serializer for mitk::TransferFunctionProperty. More...
class	VectorPropertySerializer
	Serializes and deserializes VectorProperty instances to/from XML. More...
class	SegmentationTaskListIO
	File I/O for reading and writing SegmentationTaskList objects. More...
class	SegmentationTaskListSerializer
	Serializer for SegmentationTaskList objects in scene serialization. More...
class	AddContourTool
	Fill the inside of a contour with the foreground pixel value. More...
class	AutoCropTool
	Crops selected segmentations to the smallest bounding box enclosing non-zero pixels. More...
class	BinaryThresholdBaseTool
	Base class for binary threshold segmentation tools. More...
class	BinaryThresholdTool
	Single-threshold segmentation tool for interactive segmentation. More...
class	BinaryThresholdULTool
	Upper/lower dual-threshold segmentation tool for interactive segmentation. More...
class	CalculateSegmentationVolume
	Non-blocking algorithm that calculates volume, center of mass, and bounding box of a binary segmentation image. More...
class	CloseRegionTool
	Closes/fills the inside of a contour with the foreground pixel value. More...
class	ContourModelInteractor
	Interactor for editing contour model vertices by mouse interaction. More...
class	ContourModelLiveWireInteractor
	LiveWire-based contour model interactor for editing contour segments. More...
class	ContourModelSetToImageFilter
	Fills a given mitk::ContourModelSet into a given mitk::Image. More...
class	ContourTool
	Simple contour filling tool. More...
class	CorrectorAlgorithm
	Contour-based correction algorithm for 2D binary segmentation images. More...
class	DrawPaintbrushTool
	Paintbrush drawing tool for interactive segmentation. More...
class	EditableContourTool
	Base class for lasso-like tools that draw closed contours with multiple anchor points. More...
class	ErasePaintbrushTool
	Paintbrush erasing tool for interactive segmentation. More...
class	EraseRegionTool
	Erase a connected region by filling it with the background (unlabeled) pixel value. More...
class	FeedbackContourTool
	Base class for tools that use a contour for feedback. More...
class	FillRegionBaseTool
	Base class for tools that fill a connected region of a 2D slice. More...
class	FillRegionTool
	Fill a connected region with the active label's pixel value. More...
class	GrowCutSegmentationFilter
	A filter that performs a growcut image segmentation. More...
class	GrowCutTool
	Interactive GrowCut segmentation tool. More...
class	ImageLiveWireContourModelFilter
	Calculates a LiveWire contour between two points in an image. More...
class	ImageToContourFilter
	A filter that can extract contours out of a 2D binary image. More...
class	LabelSelectionTool
	Tools that allows to inspect and select labels via the render window. More...
class	LassoTool
	A 2D segmentation tool to draw polygon structures. More...
class	LiveWireTool2D
	A 2D segmentation tool based on a LiveWire approach. More...
class	ManualSegmentationToSurfaceFilter
	Supplies a 3D surface from pre-processed segmentation. More...
class	MonaiLabel2DTool
	MONAI Label segmentation tool operating on 2D slices. More...
class	MonaiLabel3DTool
	MONAI Label segmentation tool operating on 3D volumes. More...
struct	MonaiModelInfo
	Struct holding metadata for a single MonaiLabel model. More...
struct	MonaiAppMetadata
	Struct storing MonaiLabel server metadata including all model information. More...
struct	MonaiLabelRequest
	Request class encapsulating model and server information for a MonaiLabel inference request. More...
class	MonaiLabelTool
	MonaiLabel segmentation tool base class. More...
class	MorphologicalOperations
	Provides morphological operations for binary segmentation images. More...
class	OtsuSegmentationFilter
	A filter that performs a multiple threshold otsu image segmentation. More...
class	OtsuTool3D
	Otsu multi-threshold 3D segmentation tool with preview. More...
class	PaintbrushTool
	Paintbrush tool for InteractiveSegmentation. More...
class	PickingTool
	Extracts a single region from a segmentation image and creates a new image with same geometry of the input image. More...
class	ExternalProcessOutputEvent
	Event carrying output text from an external process. More...
class	ExternalProcessStdOutEvent
class	ExternalProcessStdErrEvent
class	ProcessExecutor
	You may register an observer for an ExternalProcessOutputEvent, ExternalProcessStdOutEvent or ExternalProcessStdErrEvent in order to get notified of any output. More...
class	RegionGrowingTool
	A slice based region growing tool. More...
class	SegChangeOperationApplier
	Executes all operations derived from SegChangeOperationBase. More...
class	SegGroupModifyUndoRedoHelper
	RAII helper that captures the state of segmentation groups for undo/redo support. More...
class	SegGroupInsertUndoRedoHelper
	RAII helper that captures state for undoing a group insert operation. More...
class	SegGroupRemoveUndoRedoHelper
	RAII helper that captures state for undoing a group remove operation. More...
class	SegLabelPropModifyUndoRedoHelper
	RAII helper that captures state for undoing label property modifications. More...
class	SegChangeOperationBase
	Base class for any operation based on a MultiLabelSegmentation instance. More...
class	SegGroupInsertOperation
	An Operation for inserting groups into a MultiLabelSegmentation. More...
class	SegGroupModifyOperation
	An Operation for modifying existing groups of a MultiLabelSegmentation. More...
class	SegGroupRemoveOperation
	An Operation for removing groups from a MultiLabelSegmentation. More...
class	SegLabelPropModifyOperation
	An Operation for modifying the properties (e.g. name, color) of labels in a MultiLabelSegmentation. More...
class	SegmentationInterpolationException
	Exception thrown when a segmentation interpolation algorithm cannot compute a result from its input slices. More...
class	SegmentationInterpolationAlgorithm
	Interface class for interpolation algorithms. More...
class	SegmentationInterpolationController
	Generates interpolations of 2D slices. More...
class	SegmentationsProcessingTool
	Abstract base class for tools that batch-process all selected segmentations. More...
class	SegmentationTaskList
	A list of segmentation tasks. More...
class	SegSliceOperation
	An Operation for applying an edited 2D slice to a group of a MultiLabelSegmentation. More...
class	SegTool2D
	Abstract base class for segmentation tools. More...
class	SegWithPreviewTool
	Base class for any auto segmentation tool that provides a preview of the new segmentation. More...
class	ShapeBasedInterpolationAlgorithm
	Shape-based binary image interpolation. More...
class	ShowSegmentationAsSmoothedSurface
	Converts a segmentation image to a smoothed surface and adds it to the DataStorage. More...
class	ShowSegmentationAsSurface
	Converts a segmentation image to a surface representation and adds it to the DataStorage. More...
class	SubtractContourTool
	Erase the inside of a contour by filling it with the background pixel value. More...
class	SurfaceStampImageFilter
	Converts surface data to pixel data by stamping a surface into a volume image. More...
class	Tool
	Base class of all tools used by mitk::ToolManager. More...
class	ToolCommand
	ITK command for tracking progress of segmentation tool operations. More...
class	ParameterToolEvent
	Tool event with 1 parameter. More...
class	TwoParameterToolEvent
	Tool event with 1 parameter. More...
class	ToolManager
	Manages and coordinates instances of mitk::Tool. More...
class	ToolManagerProvider
	Micro Service Singleton to get an instance of mitk::ToolManager. More...
class	ComputeContourSetNormalsFilter
	Filter that computes surface normals for contour edge points. More...
class	CreateDistanceImageFromSurfaceFilter
	Filter that creates a distance image from contour surface points using Radial Basis Function interpolation. More...
class	ReduceContourSetFilter
	A filter that reduces the number of points of contours represented by a mitk::Surface. More...
class	SurfaceInterpolationController
class	XnatSessionTracker
	Tracks ctkXnatSession services in the CppMicroServices registry and emits signals when sessions are opened or about to be closed. More...
class	DataStorageAccessRule
	The DataStorageAccessRule inherits from the ISchedulingRule class. DataStorageAccessRule are used to restrict the adding and removing of DataStorage nodes in multi-threaded scenarios. Only DataStorageNodes within different branches can be modified concurrently. The idea and its restrictions is explained in the sections and diagrams below. More...
class	DataNodeObject
class	DataNodeSelection
class	DataStorageEditorInput
	An editor input based on a mitk::DataStorage. More...
struct	ILifecycleAwarePart
	Interface for a MITK Workbench part which wants to be notified about lifecycle changes. More...
struct	ILinkedRenderWindowPart
	Extends the IRenderWindowPart interface with methods for controlling linked render windows. More...
struct	IRenderingManager
	An interface for accessing a mitk::RenderingManager instance. More...
struct	IRenderWindowPart
	Interface for a MITK Workbench Part providing a render window. More...
struct	IRenderWindowPartListener
	Interface for berry::IViewPart implementations to be notified about mitk::IRenderWindowPart lifecycle changes. More...
struct	IZombieViewPart
	Interface for MITK Workbench Views with special Zombie state handling. More...
class	WorkbenchCommandConstants
struct	WorkbenchUtil
	Utility class for loading data, opening editors and other tasks in a MITK Workbench. More...
struct	IContextMenuAction
class	MAPAlgorithmInfoObject
	berry wrapper for a MatchPoint algorithm deployment info More...
class	MAPAlgorithmInfoSelection
	Used by plugins to communicate selections of deployed algorithms. More...

Typedefs
using	AffineTransform3D = itk::ScalableAffineTransform< ScalarType, 3 >
	3D affine transform type used throughout MITK. More...
typedef itk::BoundingBox< unsigned long, 3, ScalarType >	BoundingBox
	Standard 3D bounding box type. More...
typedef itk::FixedArray< ScalarType, 2 >	TimeBounds
	Fixed-size array holding a pair of time bound values [min, max] in milliseconds. More...
typedef itk::FixedArray< ScalarType, 3 >	FixedArrayType
	Fixed-size array of three ScalarType values (e.g., for spacing or axis components). More...
typedef itk::RGBPixel< float >	Color
	Standard RGB color typedef using float components. More...
using	ImageDimensionVectorType = std::vector< unsigned int >
typedef Line< ScalarType, 3 >	Line3D
typedef itk::VectorContainer< unsigned int, Material::Pointer >	MaterialVectorContainer
typedef Matrix< ScalarType, 2, 2 >	Matrix2D
typedef Matrix< ScalarType, 3, 3 >	Matrix3D
typedef Matrix< ScalarType, 4, 4 >	Matrix4D
typedef double	ScalarType
	Scalar type used throughout MITK for geometric computations. More...
typedef int	OperationType
	Type alias for operation type identifiers. More...
typedef itk::IOPixelEnum	itkIOPixelType
	Type alias for the ITK pixel type enumeration. More...
typedef itk::IOComponentEnum	itkIOComponentType
	Type alias for the ITK component type enumeration. More...
typedef Point< ScalarType, 2 >	Point2D
typedef Point< ScalarType, 3 >	Point3D
typedef Point< ScalarType, 4 >	Point4D
typedef Point< int, 2 >	Point2I
typedef Point< int, 3 >	Point3I
typedef Point< int, 4 >	Point4I
typedef vnl_quaternion< ScalarType >	Quaternion
	Quaternion type for 3-D rotations, based on vnl_quaternion<ScalarType>. More...
typedef std::vector< mitk::StateMachineAction::Pointer >	ActionVectorType
typedef std::vector< StateMachineCondition >	ConditionVectorType
typedef itk::SmartPointer< StateMachineState >	SpStateMachineState
typedef mitk::ScalarType	TimePointType
	Type for time point values in milliseconds (ms). More...
typedef std::size_t	TimeStepType
	Type for time step indices (non-negative integers starting from 0). More...
typedef Vector< ScalarType, 2 >	Vector2D
typedef Vector< ScalarType, 3 >	Vector3D
typedef Vector< ScalarType, 4 >	Vector4D
typedef vnl_vector< ScalarType >	VnlVector
typedef VectorProperty< double >	DoubleVectorProperty
typedef VectorProperty< int >	IntVectorProperty
typedef itk::Image< int >	TestImageType
typedef itk::Image< unsigned char >	TestMaskType
typedef std::vector< DICOMDatasetAccess * >	DICOMDatasetList
	A list of raw pointers to DICOMDatasetAccess instances. More...
typedef std::vector< DICOMDatasetAccessingImageFrameInfo::Pointer >	DICOMDatasetAccessingImageFrameList
	A list of smart pointers to DICOMDatasetAccessingImageFrameInfo instances. More...
typedef std::vector< std::string >	StringList
	A list of strings, used throughout the DICOM module to hold file paths and similar data. More...
typedef std::vector< bool >	BoolList
	A list of boolean values, used e.g. for tracking per-slice loaded states. More...
typedef std::vector< std::string >	DICOMFilePathList
	A list of file paths used throughout the DICOM module. More...
typedef std::vector< DICOMGDCMImageFrameInfo::Pointer >	DICOMGDCMImageFrameList
typedef std::vector< DICOMImageFrameInfo::Pointer >	DICOMImageFrameList
typedef TemporoSpatialStringProperty	DICOMProperty
	Type alias for DICOM property values, stored as TemporoSpatialStringProperty. More...
typedef std::vector< DICOMTag >	DICOMTagList
	A list of DICOMTag instances. More...
typedef std::vector< DICOMTagPath >	DICOMTagPathList
	A list of DICOMTagPath instances. More...
typedef std::map< DICOMTagPath, std::string >	DICOMTagPathMapType
	Map type for DICOM tags of interest. More...
typedef itk::Statistics::ListSample< itk::Statistics::MeasurementVectorPixelTraits< ScalarType >::MeasurementVectorType >	IntensityProfile
template<typename TImageType >
using	FastSymmetricForcesDemonsMultiResDefaultRegistrationAlgorithm = map::algorithm::boxed::ITKFastSymmetricForcesDemonsMultiResRegistrationAlgorithm< TImageType, map::algorithm::mitkFastSymmetricForcesDemonsMultiResDefaultRegistrationAlgorithmUIDPolicy >
	Default multi-resolution fast symmetric forces demons registration algorithm. More...
template<typename TImageType >
using	LevelSetMotionMultiResDefaultRegistrationAlgorithm = map::algorithm::boxed::ITKLevelSetMotionMultiResRegistrationAlgorithm< TImageType, map::algorithm::mitkLevelSetMotionMultiResDefaultRegistrationAlgorithmUIDPolicy >
	Default multi-resolution level set motion registration algorithm. More...
template<class TImageType >
using	MultiModalRigidHeadNeckRegistrationAlgorithm = typename map::algorithm::boxed::MultiModalRigidHeadNeckRegistrationAlgorithm< TImageType, ::map::algorithm::mitkMultiModalRigidHeadNeckRegistrationAlgorithmUIDPolicy >
	Rigid head-neck registration algorithm for multi-modal images. More...
template<class TImageType >
using	MultiModalRigidSlabbedHeadRegistrationAlgorithm = typename map::algorithm::boxed::MultiModalRigidSlabbedHeadRegistrationAlgorithm< TImageType, ::map::algorithm::mitkMultiModalRigidSlabbedHeadRegistrationAlgorithmUIDPolicy >
	Rigid slabbed-head registration algorithm for multi-modal images. More...
template<typename TPointSetType >
using	RigidClosedFormPointsDefaultRegistrationAlgorithm = typename map::algorithm::boxed::ITKRigid3DClosedFormRegistrationAlgorithmTemplate< TPointSetType, ::map::algorithm::mitkRigidClosedFormPointsDefaultRegistrationAlgorithmUIDPolicy >::Type
	Default rigid closed-form point-based registration algorithm. More...
template<typename TPointSetType >
using	RigidICPDefaultRegistrationAlgorithm = map::algorithm::boxed::ITKRigid3DICPRegistrationAlgorithm< TPointSetType, TPointSetType, ::map::algorithm::mitkRigidICPDefaultRegistrationAlgorithmUIDPolicy >
	Default rigid ICP (Iterative Closest Point) registration algorithm. More...
typedef std::string	NodeUIDType
	Type alias for node/data UID strings. More...
typedef ConcreteModelParameterizerBase< mitk::LinearModel >	LinearModelParameterizer
	Type alias for the parameterizer of the LinearModel. More...
using	ParameterValueMapType = std::map< ModelTraitsInterface::ParameterNameType, double >
using	PlotDataValues = std::vector< std::pair< double, double > >
using	PlotDataCurveCollection = itk::MapContainer< std::string, PlotDataCurve::Pointer >
using	LabelVector = std::vector< Label::Pointer >
	Type alias for a vector of mutable Label smart pointers. More...
using	ConstLabelVector = std::vector< Label::ConstPointer >
	Type alias for a vector of const Label smart pointers. More...
using	LabelValueMappingVector = std::vector< std::pair< Label::PixelType, Label::PixelType > >
using	IDToLabelClassNameMapType = std::map< MultiLabelSegmentation::LabelValueType, std::string >
typedef std::map< mitk::SlicedData::IndexValueType, double >	DecayTimeSliceMapType
	Map storing the residual decay time in seconds per slice. More...
typedef std::map< mitk::TimeStepType, DecayTimeSliceMapType >	DecayTimeMapType
	Map storing per-time-step decay time slice maps. More...
using	DataStorageInspectorIDType = std::string
	Type alias for data storage inspector identifiers. More...
using	VisibleDataStorageInspectorMapType = std::map< unsigned int, DataStorageInspectorIDType >
	Map of visible data storage inspectors, keyed by display order. More...
typedef double	DoseValueAbs
	Represents absolute dose values in Gray (Gy). More...
typedef double	DoseValueRel
	Represents relative dose values as a fraction (e.g. 0.95 = 95%). More...
typedef ::itk::VectorContainer< unsigned int, mitk::IsoDoseLevel::Pointer >	IsoDoseLevelVector
typedef VectorPropertySerializer< double >	DoubleVectorPropertySerializer
	Convenience typedef for a VectorPropertySerializer specialized for double values. More...
typedef VectorPropertySerializer< int >	IntVectorPropertySerializer
	Convenience typedef for a VectorPropertySerializer specialized for int values. More...
typedef ParameterToolEvent< int >	IntegerToolEvent
	Convenience typedef for a tool event carrying an int parameter. More...
typedef ParameterToolEvent< float >	FloatToolEvent
	Convenience typedef for a tool event carrying a float parameter. More...
typedef ParameterToolEvent< bool >	BoolToolEvent
	Convenience typedef for a tool event carrying a bool parameter. More...
typedef ctkXnatSession	XnatSession
	Type alias for ctkXnatSession, registered as a CppMicroServices service interface. More...

Enumerations
enum	BorderCondition { Constant , Periodic , ZeroFluxNeumann }
	Specifies the boundary condition for image padding in wavelet transforms. More...
enum	WaveletType { Held , Vow , Simoncelli , Shannon }
	Specifies the isotropic wavelet function type for wavelet decomposition. More...
enum	GridInterpolationPositionType { SameSize , OriginAligned , CenterAligned }
	Specifies how the resampled grid is positioned relative to the original image. More...
enum	RandomImageSamplerMode { SINGLE_ACCEPTANCE_RATE , CLASS_DEPENDEND_ACCEPTANCE_RATE , SINGLE_NUMBER_OF_ACCEPTANCE , CLASS_DEPENDEND_NUMBER_OF_ACCEPTANCE }
	Enumeration of sampling modes for RandomImageSampler. More...
enum class	AnatomicalPlane { Axial , Sagittal , Coronal , Original }
	Enumeration of standard anatomical image planes. More...
enum class	AntiAliasing : int { None , FastApproximate }
	Anti-aliasing methods for rendering. More...
enum	ProcessEventMode { REGULAR , GRABINPUT , PREFERINPUT , CONNECTEDMOUSEACTION }
enum	EEventIds {   EIDNULLEVENT , EIDLEFTMOUSEBTN , EIDRIGHTMOUSEBTN , EIDLEFTMOUSEBTNANDSHIFT ,   EIDMIDDLEMOUSEBTN , EIDLEFTMOUSEBTNANDCTRL , EIDMIDDLEMOUSEBTNANDCTRL , EIDRIGHTMOUSEBTNANDCTRL ,   EIDLEFTMOUSEBTNDOUBLECLICK , EIDMOUSEWHEEL , EIDLEFTMOUSERELEASE , EIDMIDDLEMOUSERELEASE ,   EIDRIGHTMOUSERELEASE , EIDLEFTMOUSERELEASEANDSHIFT , EIDMOUSEMOVE , EIDLEFTMOUSEBTNANDMOUSEWHEEL ,   EIDRIGHTMOUSEBTNANDMOUSEWHEEL , EIDMIDDLEMOUSEBTNANDMOUSEWHEEL , EIDLEFTMOUSEBTNANDMOUSEMOVE , EIDRIGHTMOUSEBTNANDMOUSEMOVE ,   EIDMIDDLEMOUSEBTNANDMOUSEMOVE , EIDCTRLANDLEFTMOUSEBTNANDMOUSEMOVE , EIDCTRLANDRIGHTMOUSEBTNANDMOUSEMOVE , EIDCTRLANDMIDDLEMOUSEBTNANDMOUSEMOVE ,   EIDCTRLANDLEFTMOUSEBTNRELEASE , EIDCTRLANDRIGHTMOUSEBTNRELEASE , EIDCTRLANDMIDDLEMOUSEBTNRELEASE , EIDSHIFTANDCTRLANDMIDDLEMOUSEBTN ,   EIDSHIFTANDLEFTMOUSEBTNANDMOUSEMOVE , EIDSHIFTANDCTRLANDMOUSEMOVE , EIDSHIFTANDCTRLANDMOUSERELEASE , EIDALTANDLEFTMOUSEBTN ,   EIDALTANDLEFTMOUSEBTNANDMOUSEMOVE , EIDALTANDLEFTMOUSERELEASE , EIDCTRLANDLEFTMOUSEWHEEL , EIDALTANDMOUSEWHEEL ,   EIDALTANDMIDDLEMOUSEBTN , EIDALTANDMIDDLEMOUSEBTNANDMOVE , EIDALTANDMIDDLEMOUSEBTNRELEASE , EIDALTANDSHIFTANDRIGHTMOUSEBTN ,   EIDALTANDSHIFTANDRIGHTMOUSEBTNANDMOUSEMOVE , EIDALTANDSHIFTANDRIGHTMOUSEBTNRELEASE , EIDSHIFTANDRIGHTMOUSEPRESS , EIDSHIFTANDRIGHTMOUSEMOVE ,   EIDSHIFTANDRIGHTMOUSERELEASE , EIDSHIFTANDMIDDLEMOUSEPRESS , EIDSHIFTANDMIDDLEMOUSEMOVE , EIDSHIFTANDMIDDLEMOUSERELEASE ,   EIDSTRGANDN , EIDSTRGANDE , EIDDELETE , EIDN ,   EIDESCAPE , EIDP , EIDR , EIDT ,   EIDS , EIDE , EIDSTRGANDALTANDA , EIDSTRGANDALTANDB ,   EIDH , EIDRETURN , EIDENTER , EIDSPACE ,   EIDPLUS , EIDMINUS , EIDSTRGANDALTANDH , EIDSTRGANDALTANDI ,   EIDSTRGANDALTANDS , EIDALT , EIDSTRGANDB , EIDNEW ,   EIDOLD , EIDFINISHED , EIDNO , EIDYES ,   EIDSAME , EIDNOANDLASTOBJECT , EIDNOANDNOTLASTOBJECT , EIDLAST ,   EIDNOTLAST , EIDSTSMALERNMINUS1 , EIDSTLARGERNMINUS1 , EIDPOSITIONEVENT ,   EIDEDIT , EIDSMALLERN , EIDEQUALSN , EIDLARGERN ,   EIDEMPTY , EIDSUBDESELECT , EIDSMTOSELECTED , EIDSMTODESELECTED ,   EIDTIP , EIDHEAD , EIDBODY , EIDCLEAR ,   EIDACTIVATETOOL , EIDPRINT , EV_INIT , EV_PREVIOUS ,   EV_PATH_COLLECTION_SELECTED , EV_NAVIGATION_SELECTED , EV_LESS_THEN_MIN_COUNT , EV_READY ,   EV_NEXT , EV_DONE , EV_NEW_LANDMARK , EV_REMOVE_LANDMARK ,   EIDINSIDE , EIDA , EIDB , EIDC ,   EIDD , EIDF , EIDG , EIDI ,   EIDJ , EIDK , EIDL , EIDM ,   EIDO , EIDQ , EIDU , EIDV ,   EIDW , EIDX , EIDY , EIDZ ,   EID1 , EID2 , EID3 , EID4 ,   EID5 , EID6 , EID7 , EID8 ,   EID9 , EID0 , EIDFIGUREHOVER , EIDNOFIGUREHOVER }
	Constants for EventIds; use the corresponding constant to throw an event in the code. More...
enum	EOperations {   OpNOTHING , OpTEST , OpNEWCELL , OpADD ,   OpUNDOADD , OpADDLINE , OpINSERT , OpINSERTLINE ,   OpINSERTPOINT , OpCLOSECELL , OpOPENCELL , OpMOVE ,   OpMOVELINE , OpMOVECELL , OpUNDOMOVE , OpMOVEPOINTUP ,   OpMOVEPOINTDOWN , OpREMOVE , OpREMOVELINE , OpREMOVECELL ,   OpREMOVEPOINT , OpDELETE , OpDELETELINE , OpUNDELETE ,   OpDELETECELL , OpSTATECHANGE , OpTIMECHANGE , OpTERMINATE ,   OpSELECTPOINT , OpSELECTLINE , OpSELECTCELL , OpSELECTSUBOBJECT ,   OpSELECT , OpDESELECTPOINT , OpDESELECTLINE , OpDESELECTCELL ,   OpDESELECTSUBOBJECT , OpDESELECTALL , OpDESELECT , OpNAVIGATE ,   OpZOOM , OpSCALE , OpROTATE , OpORIENT ,   OpRESTOREPLANEPOSITION , OpAPPLYTRANSFORMMATRIX , OpSETPOINTTYPE , OpMODECHANGE ,   OpSENDCOORDINATES , OpPERIPHERYSEARCH , OpROOTSEARCH , OpTHICKSTVESSELSEARCH ,   OpSHORTESTPATHSEARCH , OpATTRIBUTATION , OpDEFAULT , OpSURFACECHANGED }
	Constants for Operations. Comments are always examples of the usage. More...
enum	EActions {   AcDONOTHING , AcINITNEWOBJECT , AcINITEDITOBJECT , AcINITEDITGROUP ,   AcINITMOVEMENT , AcINITMOVE , AcINITFOREGROUND , AcINITBACKGROUND ,   AcINITNEUTRAL , AcINITUPDATE , AcADDPOINT , AcADDPOINTRMB ,   AcADD , AcADDLINE , AcADDANDFINISH , AcADDSELECTEDTOGROUP ,   AcCHECKPOINT , AcCHECKLINE , AcCHECKCELL , AcCHECKELEMENT ,   AcCHECKOBJECT , AcCHECKNMINUS1 , AcCHECKEQUALS1 , AcCHECKNUMBEROFPOINTS ,   AcCHECKSELECTED , AcCHECKONESELECTED , AcCHECKHOVERING , AcCHECKGREATERZERO ,   AcCHECKGREATERTWO , AcCHECKOPERATION , AcCHECKONESUBINTERACTOR , AcCHECKSUBINTERACTORS ,   AcFINISHOBJECT , AcFINISHGROUP , AcFINISHMOVEMENT , AcFINISHMOVE ,   AcFINISH , AcSEARCHOBJECT , AcSEARCHGROUP , AcSEARCHANOTHEROBJECT ,   AcSELECTPICKEDOBJECT , AcSELECTANOTHEROBJECT , AcSELECTGROUP , AcSELECTALL ,   AcSELECT , AcSELECTPOINT , AcSELECTLINE , AcSELECTCELL ,   AcSELECTSUBOBJECT , AcDESELECTOBJECT , AcDESELECTALL , AcDESELECT ,   AcDESELECTPOINT , AcDESELECTLINE , AcDESELECTCELL , AcNEWPOINT ,   AcNEWSUBOBJECT , AcMOVEPOINT , AcMOVESELECTED , AcMOVE ,   AcMOVEPOINTUP , AcMOVEPOINTDOWN , AcREMOVEPOINT , AcREMOVE ,   AcREMOVELINE , AcREMOVEALL , AcREMOVESELECTEDSUBOBJECT , AcWHEEL ,   AcPLUS , AcMINUS , AcDELETEPOINT , AcCLEAR ,   AcINSERTPOINT , AcINSERTLINE , AC_SET_NEXT_BUTTON_VISIBLE , AC_SET_NEXT_BUTTON_INVISIBLE ,   AC_SET_PREVIOUS_BUTTON_VISIBLE , AC_SET_PREVIOUS_BUTTON_INVISIBLE , AC_SET_ASSISTAND_WIDGET_STECK , AC_SETMAX_COUNT_REF_POINTS ,   AC_SET_NEXT_BUTTON_TEXT , AC_CHECK_LANDMARK_COUNT , AC_SET_DONE_FALSE , AC_INIT ,   AC_SET_APPLICATION_SELECTED_FALSE , AC_SENSOR_ATTACHED , AC_CLOSE_ASSISTENT , AC_START_APPLICATION_TEXT ,   AC_START_NAVIGATION , AC_START_PATHCOLLECTION , AC_LOAD_LANDMARKS , AC_CALCULATE_LANDMARK_TRANSFORM ,   AcTERMINATE_INTERACTION , AcTRANSLATESTART , AcTRANSLATE , AcSCALESTART ,   AcSCALE , AcROTATESTART , AcROTATE , AcINITAFFINEINTERACTIONS ,   AcFINISHAFFINEINTERACTIONS , AcTRANSLATEEND , AcSCALEEND , AcROTATEEND ,   AcINITZOOM , AcZOOM , AcSCROLL , AcLEVELWINDOW ,   AcSCROLLMOUSEWHEEL , AcSETSTARTPOINT , AcMODEDESELECT , AcMODESELECT ,   AcMODESUBSELECT , AcINFORMLISTENERS , AcASKINTERACTORS , AcCHECKGREATERONE ,   AcCHECKBOUNDINGBOX , AcFORCESUBINTERACTORS , AcSENDCOORDINATES , AcTRANSMITEVENT ,   AcPERIPHERYSEARCH , AcROOTSEARCH , AcTHICKSTVESSELSEARCH , AcSHORTESTPATHSEARCH ,   AcSINGLE , AcATTRIBUTATION , AcDEFAULT , AcSETVESSELELEMENT ,   AcCHECKBARRIERSTATUS , AcUPDATEMESH , AcINCREASE , AcDECREASE ,   AcMODIFY , AcUNDOUPDATE , AcENTEROBJECT , AcLEAVEOBJECT ,   AcSWITCHOBJECT , AcUPDATELINE , AcINITLINE , AcTERMINATELINE ,   AcCREATEBOX , AcCREATEOBJECTFROMLINE , AcCANCEL , AcACTIVATETOOL ,   AcROTATEAROUNDPOINT1 , AcROTATEAROUNDPOINT2 , AcMOVEPOINT1 , AcMOVEPOINT2 ,   AcUPDATEPOINT , AcUPDATERADIUSMOUSEWHEEL , AcDISPLAYOPTIONS , AcCYCLE ,   AcACCEPT , AcCHECKPOSITION , AcINITIALIZECONTOUR , AcCALCULATENEWSEGMENTATION_SP ,   AcINTERACTOR , AcCALCULATENEWSEGMENTATION_BB }
	Constants for EventMapping (ActionIds). More...
enum	EEventType {   Type_None , Type_Timer , Type_MouseButtonPress , Type_MouseButtonRelease ,   Type_MouseButtonDblClick , Type_MouseMove , Type_KeyPress , Type_KeyRelease ,   Type_FocusIn , Type_FocusOut , Type_Enter , Type_Leave ,   Type_Paint , Type_Move , Type_Resize , Type_Create ,   Type_Destroy , Type_Show , Type_Hide , Type_Close ,   Type_Quit , Type_Reparent , Type_ShowMinimized , Type_ShowNormal ,   Type_WindowActivate , Type_WindowDeactivate , Type_ShowToParent , Type_HideToParent ,   Type_ShowMaximized , Type_ShowFullScreen , Type_Accel , Type_Wheel ,   Type_AccelAvailable , Type_CaptionChange , Type_IconChange , Type_ParentFontChange ,   Type_ApplicationFontChange , Type_ParentPaletteChange , Type_ApplicationPaletteChange , Type_PaletteChange ,   Type_Clipboard , Type_Speech , Type_SockAct , Type_AccelOverride ,   Type_DeferredDelete , Type_DragEnter , Type_DragMove , Type_DragLeave ,   Type_Drop , Type_DragResponse , Type_ChildInserted , Type_ChildRemoved ,   Type_LayoutHint , Type_ShowWindowRequest , Type_ActivateControl , Type_DeactivateControl ,   Type_ContextMenu , Type_IMStart , Type_IMCompose , Type_IMEnd ,   Type_Accessibility , Type_TabletMove , Type_LocaleChange , Type_LanguageChange ,   Type_LayoutDirectionChange , Type_Style , Type_TabletPress , Type_TabletRelease ,   Type_User , Type_MaxUser }
	Type of an Event. More...
enum	EButtonStates {   BS_NoButton , BS_LeftButton , BS_RightButton , BS_MidButton ,   BS_MouseButtonMask , BS_ShiftButton , BS_ControlButton , BS_AltButton ,   BS_MetaButton , BS_KeyButtonMask , BS_Keypad }
	Mouse/keyboard button state values. More...
enum	EKeys {   Key_Escape , Key_Tab , Key_Backtab , Key_BackTab ,   Key_Backspace , Key_BackSpace , Key_Return , Key_Enter ,   Key_Insert , Key_Delete , Key_Pause , Key_Print ,   Key_SysReq , Key_Home , Key_End , Key_Left ,   Key_Up , Key_Right , Key_Down , Key_Prior ,   Key_PageUp , Key_Next , Key_PageDown , Key_Shift ,   Key_Control , Key_Meta , Key_Alt , Key_CapsLock ,   Key_NumLock , Key_ScrollLock , Key_F1 , Key_F2 ,   Key_F3 , Key_F4 , Key_F5 , Key_F6 ,   Key_F7 , Key_F8 , Key_F9 , Key_F10 ,   Key_F11 , Key_F12 , Key_F13 , Key_F14 ,   Key_F15 , Key_F16 , Key_F17 , Key_F18 ,   Key_F19 , Key_F20 , Key_F21 , Key_F22 ,   Key_F23 , Key_F24 , Key_F25 , Key_F26 ,   Key_F27 , Key_F28 , Key_F29 , Key_F30 ,   Key_F31 , Key_F32 , Key_F33 , Key_F34 ,   Key_F35 , Key_Super_L , Key_Super_R , Key_Menu ,   Key_Hyper_L , Key_Hyper_R , Key_Help , Key_Muhenkan ,   Key_Henkan , Key_Hiragana_Katakana , Key_Zenkaku_Hankaku , Key_Space ,   Key_Any , Key_Exclam , Key_QuoteDbl , Key_NumberSign ,   Key_Dollar , Key_Percent , Key_Ampersand , Key_Apostrophe ,   Key_ParenLeft , Key_ParenRight , Key_Asterisk , Key_Plus ,   Key_Comma , Key_Minus , Key_Period , Key_Slash ,   Key_0 , Key_1 , Key_2 , Key_3 ,   Key_4 , Key_5 , Key_6 , Key_7 ,   Key_8 , Key_9 , Key_Colon , Key_Semicolon ,   Key_Less , Key_Equal , Key_Greater , Key_Question ,   Key_At , Key_A , Key_B , Key_C ,   Key_D , Key_E , Key_F , Key_G ,   Key_H , Key_I , Key_J , Key_K ,   Key_L , Key_M , Key_N , Key_O ,   Key_P , Key_Q , Key_R , Key_S ,   Key_T , Key_U , Key_V , Key_W ,   Key_X , Key_Y , Key_Z , Key_BracketLeft ,   Key_Backslash , Key_BracketRight , Key_AsciiCircum , Key_Underscore ,   Key_QuoteLeft , Key_BraceLeft , Key_Bar , Key_BraceRight ,   Key_AsciiTilde , Key_nobreakspace , Key_exclamdown , Key_cent ,   Key_sterling , Key_currency , Key_yen , Key_brokenbar ,   Key_section , Key_diaeresis , Key_copyright , Key_ordfeminine ,   Key_guillemotleft , Key_notsign , Key_hyphen , Key_registered ,   Key_macron , Key_degree , Key_plusminus , Key_twosuperior ,   Key_threesuperior , Key_acute , Key_mu , Key_paragraph ,   Key_periodcentered , Key_cedilla , Key_onesuperior , Key_masculine ,   Key_guillemotright , Key_onequarter , Key_onehalf , Key_threequarters ,   Key_questiondown , Key_Agrave , Key_Aacute , Key_Acircumflex ,   Key_Atilde , Key_Adiaeresis , Key_Aring , Key_AE ,   Key_Ccedilla , Key_Egrave , Key_Eacute , Key_Ecircumflex ,   Key_Ediaeresis , Key_Igrave , Key_Iacute , Key_Icircumflex ,   Key_Idiaeresis , Key_ETH , Key_Ntilde , Key_Ograve ,   Key_Oacute , Key_Ocircumflex , Key_Otilde , Key_Odiaeresis ,   Key_multiply , Key_Ooblique , Key_Ugrave , Key_Uacute ,   Key_Ucircumflex , Key_Udiaeresis , Key_Yacute , Key_THORN ,   Key_ssharp , Key_agrave , Key_aacute , Key_acircumflex ,   Key_atilde , Key_adiaeresis , Key_aring , Key_ae ,   Key_ccedilla , Key_egrave , Key_eacute , Key_ecircumflex ,   Key_ediaeresis , Key_igrave , Key_iacute , Key_icircumflex ,   Key_idiaeresis , Key_eth , Key_ntilde , Key_ograve ,   Key_oacute , Key_ocircumflex , Key_otilde , Key_odiaeresis ,   Key_division , Key_oslash , Key_ugrave , Key_uacute ,   Key_ucircumflex , Key_udiaeresis , Key_yacute , Key_thorn ,   Key_ydiaeresis , Key_unknown , Key_none }
	Key constants mirroring Qt key codes. More...
enum	PointSpecificationType {   PTUNDEFINED , PTSTART , PTCORNER , PTEDGE ,   PTEND }
	Enumeration of point specification types. More...
enum	PixelSpacingInterpretation { SpacingInPatient , SpacingAtDetector , SpacingUnknown }
	How the mitk::Image spacing should be interpreted (see mitk::DICOMFileReader). More...
enum	ReaderImplementationLevel {   SOPClassSupported , SOPClassPartlySupported , SOPClassImplemented , SOPClassUnsupported ,   SOPClassUnknown }
	Describes how well the reader is tested for a certain file type (see mitk::DICOMFileReader). More...
enum class	LogLevel {   Info , Warn , Error , Fatal ,   Debug }
	Severity levels for log messages in the MITK log mechanism. More...
enum class	Sex { Male , Female , Other }
	Patient sex modeled as a closed set. More...
enum class	DICOMReadPolicy { Lenient , Strict }
	Policy controlling whether benchmark-recommended adaptations of borderline / non-spec DICOM input are applied. More...
enum class	ManufacturerFamily { Siemens , GE , Philips , Other }
	Manufacturer family inferred from DICOM tag (0008,0070) Manufacturer. More...
enum class	DecayCorrectionStrategy { Admin , Start , None , Manual }
	Strategy describing how (or whether) the input pixel data has been decay-corrected by the scanner. More...
enum class	SUVPixelSemantics { ActivityConcentration , PrenormalizedSUV }
	Whether the raw PET pixel values represent activity concentration or a pre-computed SUV. More...
enum class	SUVVariant {   BW , LBM_Janmahasatian , LBM_James128 , IBW ,   BSA }
	Identifies a Standardized Uptake Value (SUV) variant. More...
enum class	PackageStatus { Pending , Installing , Installed , Failed }
	Status of a single package during installation. More...
enum	{ PropertyRole }
	Custom data role used to retrieve the underlying mitk::BaseProperty pointer. More...
enum class	Hierarchy { All , Toplevel }
	Enumeration for hierarchy filter used in node queries. More...
enum class	PropertyScope { All , Node , Data }
	Enumeration for property scope in REST API queries. More...
enum class	ScreenshotFormat { Png , Jpeg }
	Format for screenshot capture. More...
enum class	WindowKind { TwoD , ThreeD }
	Closed set of render window kinds reported by the bridge. More...
enum class	ClientAccessMode { LocalhostOnly , AllowAll , Whitelist }
	Access mode for client IP filtering. More...
enum class	FileAccessMode { Unrestricted , AllowedDirectories }
	Access mode for file system path restrictions. More...
enum class	SceneFileForm { Zip , JsonStandalone , UnpackedIndex }
	The scene file forms a Segmentation Task List accepts as a Scene.Path. More...

Functions
MITKNEWMODULE_EXPORT bool	Equal (mitk::ExampleDataStructure *leftHandSide, mitk::ExampleDataStructure *rightHandSide, mitk::ScalarType eps, bool verbose)
	Returns true if the example data structures are considered equal. More...
	itkEventMacroDeclaration (BoundingShapeInteractionEvent, itk::AnyEvent)
MITKBOUNDINGSHAPE_EXPORT void	RegisterBoundingShapeObjectFactory ()
	Register the BoundingShapeObjectFactory with the CoreObjectFactory. More...
std::vector< mitk::Point3D >	GetCornerPoints (mitk::BaseGeometry::Pointer geometry, bool visualizationOffset)
	helper function for calculating corner points of the bounding object from a given geometry More...
mitk::Point3D	CalcAvgPoint (mitk::Point3D a, mitk::Point3D b)
	helper function for calculating the average of two points More...
std::vector< int >	GetHandleIndices (int index)
	Return the four corner-point indices that define the face associated with the given handle index. More...
std::array< int, 4 >	GetHandleFaceCornerIndices (int handleIndex)
	Return the four corner-point indices of the box face that the given handle sits on, ordered along the face perimeter so that consecutive indices (and the last-to-first pair) form the four face edges. More...
bool	GetFacePlaneIntersectionCenter (const std::array< mitk::Point3D, 4 > &faceCorners, const mitk::Point3D &planeOrigin, const mitk::Vector3D &planeNormal, mitk::Point3D &center)
	Intersect a planar, convex quad (given by its four perimeter-ordered corner points) with a plane and return the center of the resulting intersection segment. More...
DICOMTagPath	DICOM_IMAGING_FREQUENCY_PATH ()
	Return the DICOMTagPath for the Imaging Frequency DICOM tag. More...
MITKCEST_EXPORT bool	IsAnyCESTImage (const Image *cestImage)
	Check whether an image is any type of CEST image (CEST/WASABI or T1). More...
MITKCEST_EXPORT bool	IsCESTorWasabiImage (const Image *cestImage)
	Check whether an image is a CEST or WASABI image. More...
MITKCEST_EXPORT bool	IsCESTT1Image (const Image *cestImage)
	Check whether an image is a CEST T1 image. More...
MITKCEST_EXPORT NodePredicateBase::Pointer	CreateAnyCESTImageNodePredicate ()
	Create a node predicate that matches any CEST image node. More...
MITKCEST_EXPORT NodePredicateBase::Pointer	CreateCESTorWasabiImageNodePredicate ()
	Create a node predicate that matches CEST or WASABI image nodes. More...
MITKCEST_EXPORT NodePredicateBase::Pointer	CreateCESTT1ImageNodePredicate ()
	Create a node predicate that matches CEST T1 image nodes. More...
MITKCEST_EXPORT bool	IsNotNormalizedCESTImage (const Image *cestImage)
	Check whether a CEST image still contains un-normalized M0 timesteps. More...
const std::string MITKCEST_EXPORT	CEST_PROPERTY_NAME_PREPERATIONTYPE ()
	Return the property name for the CEST preparation type ("CEST.PreparationType"). More...
const std::string MITKCEST_EXPORT	CEST_PROPERTY_NAME_RECOVERYMODE ()
	Return the property name for the CEST recovery mode ("CEST.RecoveryMode"). More...
const std::string MITKCEST_EXPORT	CEST_PROPERTY_NAME_SPOILINGTYPE ()
	Return the property name for the CEST spoiling type ("CEST.SpoilingType"). More...
const std::string MITKCEST_EXPORT	CEST_PROPERTY_NAME_OFFSETS ()
	Return the property name for the CEST frequency offsets ("CEST.Offsets"). More...
const std::string MITKCEST_EXPORT	CEST_PROPERTY_NAME_TREC ()
	Return the property name for the CEST T1 recovery times ("CEST.TREC"). More...
const std::string MITKCEST_EXPORT	CEST_PROPERTY_NAME_FREQ ()
	Return the property name for the CEST frequency ("CEST.FREQ"). More...
const std::string MITKCEST_EXPORT	CEST_PROPERTY_NAME_PULSEDURATION ()
	Return the property name for the CEST pulse duration ("CEST.PulseDuration"). More...
const std::string MITKCEST_EXPORT	CEST_PROPERTY_NAME_B1Amplitude ()
	Return the property name for the CEST B1 amplitude ("CEST.B1Amplitude"). More...
const std::string MITKCEST_EXPORT	CEST_PROPERTY_NAME_DutyCycle ()
	Return the property name for the CEST duty cycle ("CEST.DutyCycle"). More...
double MITKCEST_EXPORT	GetCESTB1Amplitude (const IPropertyProvider *provider)
	Get the CEST B1 amplitude from a property provider. More...
double MITKCEST_EXPORT	GetCESTFrequency (const IPropertyProvider *provider)
	Get the CEST frequency from a property provider in MHz. More...
void MITKCEST_EXPORT	SetCESTFrequencyMHz (IPropertyOwner *owner, double freqInMHz)
	Set the CEST frequency on a property owner in MHz. More...
double MITKCEST_EXPORT	GetCESTPulseDuration (const IPropertyProvider *provider)
	Get the CEST pulse duration from a property provider in seconds. More...
double MITKCEST_EXPORT	GetCESTDutyCycle (const IPropertyProvider *provider)
	Get the CEST duty cycle from a property provider as a scaling factor. More...
MITKCEST_EXPORT std::vector< ScalarType >	ExtractCESTOffset (const BaseData *image)
	Extract CEST frequency offsets from an image's properties as a vector. More...
MITKCEST_EXPORT std::vector< ScalarType >	ExtractCESTT1Time (const BaseData *image)
	Extract CEST T1 recovery times from an image's properties as a vector. More...
MITKCLCORE_EXPORT FeatureID	CreateFeatureID (FeatureID templateID, std::string name)
	Create a FeatureID by cloning a template and setting its name. More...
	itkEventMacroDeclaration (ContourModelEvent, itk::AnyEvent)
	itkEventMacroDeclaration (ContourModelShiftEvent, ContourModelEvent)
	itkEventMacroDeclaration (ContourModelSizeChangeEvent, ContourModelEvent)
	itkEventMacroDeclaration (ContourModelAddEvent, ContourModelSizeChangeEvent)
	itkEventMacroDeclaration (ContourModelRemoveEvent, ContourModelSizeChangeEvent)
	itkEventMacroDeclaration (ContourModelExpandTimeBoundsEvent, ContourModelEvent)
	itkEventMacroDeclaration (ContourModelClosedEvent, ContourModelEvent)
MITKCORE_EXPORT void	ToJSON (nlohmann::json &j, AffineTransform3D::ConstPointer transform)
	Serialize an AffineTransform3D to a JSON array with 16 elements (row-major 4x4 matrix). More...
MITKCORE_EXPORT void	FromJSON (const nlohmann::json &j, AffineTransform3D::Pointer transform)
	Deserialize an AffineTransform3D from a JSON array with 16 elements (row-major 4x4 matrix). More...
template<typename ArrayType , typename TCoordRep , unsigned int NVectorDimension>
void	FillArray (itk::FixedArray< TCoordRep, NVectorDimension > &toArray, const ArrayType &array)
	Methods to copy between itk::FixedArray types (like mitk::Vector and mitk::Point) and ArrayTypes. More...
template<typename ArrayType , typename TCoordRep , unsigned int NVectorDimension>
itk::FixedArray< TCoordRep, NVectorDimension >	FillArray (const ArrayType &array)
	Copy elements of an array into a new itk::FixedArray and return it. More...
template<typename ArrayType , typename TCoordRep , unsigned int NVectorDimension>
void	ToArray (ArrayType &array, const itk::FixedArray< TCoordRep, NVectorDimension > &vectorOrPoint)
	Copy elements from an itk::FixedArray into an array. More...
template<typename ArrayType , typename TCoordRep , unsigned int NVectorDimension>
ArrayType	ToArray (const itk::FixedArray< TCoordRep, NVectorDimension > &vectorOrPoint)
	Copy elements from an itk::FixedArray into a new array and return it. More...
template<class Tout >
void	FillVector3D (Tout &out, mitk::ScalarType x, mitk::ScalarType y, mitk::ScalarType z)
	Fill a 3D array/vector with the given x, y, z values. More...
template<class Tout >
void	FillVector4D (Tout &out, mitk::ScalarType x, mitk::ScalarType y, mitk::ScalarType z, mitk::ScalarType t)
	Fill a 4D array/vector with the given x, y, z, t values. More...
template<typename TArrayType1 , typename TArrayType2 >
bool	EqualArray (TArrayType1 &arrayType1, TArrayType2 &arrayType2, int size, ScalarType eps=mitk::eps, bool verbose=false)
	Compare two array-like objects element-wise for equality within a tolerance. More...
MITKCORE_EXPORT bool	Equal (const mitk::BaseGeometry &leftHandSide, const mitk::BaseGeometry &rightHandSide, ScalarType coordinateEps, ScalarType directionEps, bool verbose=false)
	Equal A function comparing two geometries for being identical. More...
MITKCORE_EXPORT bool	Equal (const mitk::BaseGeometry &leftHandSide, const mitk::BaseGeometry &rightHandSide, ScalarType eps=mitk::eps, bool verbose=false)
	Equal A function comparing two geometries for being identical. More...
MITKCORE_EXPORT bool	Equal (const mitk::BaseGeometry::TransformType &leftHandSide, const mitk::BaseGeometry::TransformType &rightHandSide, ScalarType eps, bool verbose)
	Equal A function comparing two transforms (TransformType) for being identical. More...
MITKCORE_EXPORT bool	Equal (const mitk::BaseGeometry::BoundingBoxType &leftHandSide, const mitk::BaseGeometry::BoundingBoxType &rightHandSide, ScalarType eps, bool verbose)
	Equal A function comparing two bounding boxes (BoundingBoxType) for being identical. More...
MITKCORE_EXPORT bool	IsSubGeometry (const mitk::BaseGeometry &testGeo, const mitk::BaseGeometry &referenceGeo, ScalarType coordinateEps, ScalarType directionEps, bool verbose=false)
	A function checks if a test geometry is a sub geometry of a given reference geometry. More...
MITKCORE_EXPORT bool	IsSubGeometry (const mitk::BaseGeometry &testGeo, const mitk::BaseGeometry &referenceGeo, ScalarType eps=mitk::eps, bool verbose=false)
	A function checks if a test geometry is a sub geometry of a given reference geometry. More...
MITKCORE_EXPORT nlohmann::json	ConvertPropertyToSelfContainedJson (const BaseProperty *property)
	Serialize a property to self contained JSON. More...
MITKCORE_EXPORT BaseProperty::Pointer	ConvertPropertyFromSelfContainedJson (const nlohmann::json &json)
	Deserialize a property from self contained JSON representation. More...
	itkEventMacroDeclaration (RendererResetEvent, itk::AnyEvent)
Color	MakeColor (float r, float g, float b)
	Convenience function to create a Color from individual RGB components. More...
std::string MITKCORE_EXPORT	ConvertCompositePixelValueToString (Image::Pointer image, itk::Index< 3 > index)
	Convert composite pixel values (RGB, RGBA) to a displayable string. More...
void	swap (CustomMimeType &l, CustomMimeType &r)
	Swap two CustomMimeType objects. More...
	itkEventMacroDeclaration (DataInteractorEvent, itk::AnyEvent)
	itkEventMacroDeclaration (StartInteraction, DataInteractorEvent)
	itkEventMacroDeclaration (ResultReady, DataInteractorEvent)
	itkEventMacroDeclaration (InteractorChangedEvent, itk::AnyEvent)
	Definition of an itk::Event that is invoked when a DataInteractor is set on this DataNode. More...
MITKCORE_EXPORT std::istream &	operator>> (std::istream &i, DataNode::Pointer &dtn)
	Stream input operator for DataNode smart pointers. More...
MITKCORE_EXPORT std::ostream &	operator<< (std::ostream &o, DataNode::Pointer &dtn)
	Stream output operator for DataNode smart pointers. More...
MITKCORE_EXPORT DataNode::Pointer	FindTopmostVisibleNode (const DataStorage::SetOfObjects::ConstPointer nodes, const Point3D worldPosition, const TimePointType timePoint, const BaseRenderer *baseRender)
	Find the topmost visible node at a given world position and time point. More...
MITKCORE_EXPORT std::optional< std::string >	GetEnv (const std::string &name)
	Retrieve the value of an environment variable. More...
MITKCORE_EXPORT bool	SetEnv (const std::string &name, const std::string &value)
	Set the value of an environment variable. More...
MITKCORE_EXPORT bool	UnsetEnv (const std::string &name)
	Remove an environment variable. More...
MITKCORE_EXPORT bool	AddPathEnv (const fs::path &pathEntry)
	Add a directory to the PATH environment variable. More...
MITKCORE_EXPORT bool	RemovePathEnv (const fs::path &pathEntry)
	Remove a directory from the PATH environment variable. More...
template<typename DifferenceType >
bool	DifferenceBiggerOrEqualEps (DifferenceType diff, mitk::ScalarType epsilon=mitk::eps)
	Check if the absolute difference is bigger than or equal to a given epsilon. More...
template<typename ElementToOutput1 , typename ElementToOutput2 >
void	ConditionalOutputOfDifference (ElementToOutput1 elem1, ElementToOutput2 elem2, mitk::ScalarType eps, bool verbose, bool isEqual)
	Conditionally output the difference between two elements to the log. More...
bool	Equal (ScalarType scalar1, ScalarType scalar2, ScalarType eps=mitk::eps, bool verbose=false)
	Compare two scalar values for equality within a tolerance. More...
MITKCORE_EXPORT std::ostream &	operator<< (std::ostream &os, const mitk::Exception &e)
	Stream output operator for mitk::Exception. More...
void	swap (FileReaderSelector &fws1, FileReaderSelector &fws2)
	Swap two FileReaderSelector objects. More...
void	swap (FileWriterSelector &fws1, FileWriterSelector &fws2)
	Swap two FileWriterSelector objects. More...
template<typename T >
void	from_json (const nlohmann::json &j, GenericLookupTable< T > &t)
	Deserialize a GenericLookupTable from JSON. More...
template<typename T >
void	to_json (nlohmann::json &j, const GenericLookupTable< T > &t)
	Serialize a GenericLookupTable to JSON. More...
MITKCORE_EXPORT bool	Equal (const mitk::GeometryData &leftHandSide, const mitk::GeometryData &rightHandSide, mitk::ScalarType eps, bool verbose)
	Equal Compare two GeometryData objects for equality, returns true if found equal. More...
MITKCORE_EXPORT bool	Equal (const mitk::GeometryTransformHolder &leftHandSide, const mitk::GeometryTransformHolder &rightHandSide, ScalarType eps, bool verbose)
	Compare two GeometryTransformHolder objects for equality. More...
MITKCORE_EXPORT bool	Equal (const mitk::GeometryTransformHolder *leftHandSide, const mitk::GeometryTransformHolder *rightHandSide, ScalarType eps, bool verbose)
	Compare two GeometryTransformHolder objects for equality (pointer version). More...
template<typename T >
std::vector< std::string >	GetClassHierarchy ()
	Get the class hierarchy for MITK classes as a list of class names. More...
template<>
std::vector< std::string >	GetClassHierarchy< void > ()
MITKCORE_EXPORT ImageDimensionVectorType	DetermineImageDimensionsFromTimeGeometry (const TimeGeometry *timeGeometry)
MITKCORE_EXPORT bool	Equal (const mitk::Image &leftHandSide, const mitk::Image &rightHandSide, ScalarType eps, bool verbose)
	Equal A function comparing two images for being equal in meta- and imagedata. More...
template<typename TPixel , unsigned int VImageDimension, class ItkOutputImageType >
void	_CastToItkImage2Access (const itk::Image< TPixel, VImageDimension > *itkInputImage, itk::SmartPointer< ItkOutputImageType > &itkOutputImage)
template<typename TPixel , unsigned int VImageDimension, class ItkOutputImageType >
void	_CastToItkImage2Access (const itk::VectorImage< TPixel, VImageDimension > *itkInputImage, itk::SmartPointer< ItkOutputImageType > &itkOutputImage)
template<typename ItkOutputImageType >
void MITKCORE_EXPORT	CastToItkImage (const mitk::Image *mitkImage, itk::SmartPointer< ItkOutputImageType > &itkOutputImage)
	Cast an mitk::Image to an itk::Image with a specific type. More...
template<typename TPixelType , unsigned int VImageDimension>
void MITKCORE_EXPORT	CastToItkImage (const mitk::Image *mitkImage, itk::SmartPointer< itk::VectorImage< TPixelType, VImageDimension >> &itkOutputImage)
	Cast an mitk::Image to an itk::VectorImage with a specific type. More...
template<typename ItkOutputImageType >
void	CastToMitkImage (const itk::SmartPointer< ItkOutputImageType > &itkimage, itk::SmartPointer< mitk::Image > &mitkoutputimage)
	Cast an itk::Image (with a specific type) to an mitk::Image. More...
template<typename ItkOutputImageType >
void	CastToMitkImage (const ItkOutputImageType *itkimage, itk::SmartPointer< mitk::Image > &mitkoutputimage)
	Cast an itk::Image (with a specific type) to an mitk::Image. More...
template<class TPixel >
mitk::ScalarType	FastSinglePixelAccess (mitk::PixelType, mitk::Image::Pointer im, ImageDataItem *item, itk::Index< 3 > idx, mitk::ScalarType &val, int component=0)
template<class TPixel >
mitk::ScalarType	FastSinglePixelAccess (mitk::PixelType, mitk::Image::ConstPointer im, const ImageDataItem *item, itk::Index< 3 > idx, mitk::ScalarType &val, int component=0)
MITKCORE_EXPORT Image::ConstPointer	SelectImageByTimeStep (const Image *image, unsigned int timestep)
	Convenience helper to extract a single time step from a 4D image. More...
MITKCORE_EXPORT Image::Pointer	SelectImageByTimeStep (Image *image, unsigned int timestep)
	Non-const version of SelectImageByTimeStep. More...
MITKCORE_EXPORT Image::ConstPointer	SelectImageByTimePoint (const Image *image, TimePointType timePoint)
	Convenience helper to extract a single time step from a 4D image by time point. More...
MITKCORE_EXPORT Image::Pointer	SelectImageByTimePoint (Image *image, TimePointType timePoint)
	Non-const version of SelectImageByTimePoint. More...
template<typename TPixel , unsigned int VDimension>
ImageTypeTrait< TPixel, VDimension >::ImageType::Pointer	ImageToItkImage (mitk::Image *mitkImage)
	Convert a MITK image to an ITK image. More...
template<typename TPixel , unsigned int VDimension>
ImageTypeTrait< TPixel, VDimension >::ImageType::ConstPointer	ImageToItkImage (const mitk::Image *mitkImage)
	Convert a MITK image to an ITK image (const/read-only version). More...
MITKCORE_EXPORT bool	operator== (const InteractionEvent &a, const InteractionEvent &b)
MITKCORE_EXPORT bool	operator!= (const InteractionEvent &a, const InteractionEvent &b)
InteractionEvent::MouseButtons	operator| (InteractionEvent::MouseButtons a, InteractionEvent::MouseButtons b)
InteractionEvent::MouseButtons &	operator|= (InteractionEvent::MouseButtons &a, InteractionEvent::MouseButtons &b)
InteractionEvent::ModifierKeys	operator| (InteractionEvent::ModifierKeys a, InteractionEvent::ModifierKeys b)
InteractionEvent::ModifierKeys &	operator|= (InteractionEvent::ModifierKeys &a, InteractionEvent::ModifierKeys &b)
	itkEventMacroDeclaration (InteractionSchemeChangedEvent, itk::AnyEvent)
	Can be observed by GUI class to update button states when type is changed programmatically. More...
template<typename BasicJsonType >
void	to_json (BasicJsonType &j, const IOVolumeSplitReason::ReasonType &e)
template<typename BasicJsonType >
void	from_json (const BasicJsonType &j, IOVolumeSplitReason::ReasonType &e)
MITKCORE_EXPORT void	to_json (nlohmann::json &j, IOVolumeSplitReason::ConstPointer reason)
	Serialize an IOVolumeSplitReason (const) to a JSON object. More...
MITKCORE_EXPORT void	to_json (nlohmann::json &j, IOVolumeSplitReason::Pointer reason)
	Serialize an IOVolumeSplitReason to a JSON object. More...
MITKCORE_EXPORT void	from_json (const nlohmann::json &j, IOVolumeSplitReason &reason)
	Deserialize an IOVolumeSplitReason from a JSON object. More...
MITKCORE_EXPORT void	ApplyPreferencesOverrides (const std::string &xmlContent, IPreferences *prefs)
	Apply preference overrides from XML content. More...
MITKCORE_EXPORT void	ApplyPreferencesPatches (const std::string &xmlContent, IPreferences *prefs)
	Permanently patch preferences from an XML string. More...
template<typename ItkOutputImageType >
Image::Pointer	ImportItkImage (const itk::SmartPointer< ItkOutputImageType > &itkimage, const BaseGeometry *geometry=nullptr, bool update=true)
	Import an itk::Image (with a specific type) as an mitk::Image. More...
template<typename ItkOutputImageType >
Image::Pointer	ImportItkImage (const ItkOutputImageType *itkimage, const BaseGeometry *geometry=nullptr, bool update=true)
	Import an itk::Image (with a specific type) as an mitk::Image. More...
template<typename ItkOutputImageType >
Image::Pointer	GrabItkImageMemory (itk::SmartPointer< ItkOutputImageType > &itkimage, mitk::Image *mitkImage=nullptr, const BaseGeometry *geometry=nullptr, bool update=true)
	Grab the memory of an itk::Image (with a specific type) and put it into an mitk::Image. More...
template<typename ItkOutputImageType >
Image::Pointer	GrabItkImageMemory (ItkOutputImageType *itkimage, mitk::Image *mitkImage=nullptr, const BaseGeometry *geometry=nullptr, bool update=true)
	Grab the memory of an itk::Image (with a specific type) and put it into an mitk::Image. More...
template<typename ItkOutputImageType >
Image::Pointer	GrabItkImageMemoryChannel (ItkOutputImageType *itkimage, const TimeGeometry *geometry=nullptr, mitk::Image *mitkImage=nullptr, bool update=true)
	Grab the memory of an itk::Image and put it into an mitk::Image channel. More...
MITKCORE_EXPORT std::vector< TimePointType >	ConvertMetaDataObjectToTimePointList (const itk::MetaDataObjectBase *data)
MITKCORE_EXPORT itk::MetaDataObjectBase::Pointer	ConvertTimePointListToMetaDataObject (const mitk::TimeGeometry *timeGeometry)
MITKCORE_EXPORT void	to_json (nlohmann::json &j, const LevelWindow &lw)
MITKCORE_EXPORT void	from_json (const nlohmann::json &j, LevelWindow &lw)
template<typename Target >
Target	lexical_cast (const std::string &arg)
	Convert a string to a numeric target type with an std::istringstream fallback. More...
	itkEventMacroDeclaration (UndoStackEvent, itk::ModifiedEvent)
	ITK events to notify listening GUI elements when the undo or redo stack is empty (disable button) or when there are items in the stack (enable button). More...
	itkEventMacroDeclaration (UndoEmptyEvent, UndoStackEvent)
	Undo stack became empty. More...
	itkEventMacroDeclaration (RedoEmptyEvent, UndoStackEvent)
	Redo stack became empty. More...
	itkEventMacroDeclaration (UndoNotEmptyEvent, UndoStackEvent)
	Undo stack is no longer empty. More...
	itkEventMacroDeclaration (RedoNotEmptyEvent, UndoStackEvent)
	Redo stack is no longer empty. More...
	itkEventMacroDeclaration (UndoFullEvent, UndoStackEvent)
	Additional events for signaling that a stack has reached its limit. More...
	itkEventMacroDeclaration (RedoFullEvent, UndoStackEvent)
	Redo stack is full. More...
	mitkSpecializeGenericLookupTable (BoolLookupTable, bool)
	Specializations of GenericLookupTable for common value types. More...
	mitkSpecializeGenericLookupTable (FloatLookupTable, float)
	mitkSpecializeGenericLookupTable (IntLookupTable, int)
	mitkSpecializeGenericLookupTable (StringLookupTable, std::string)
template<typename TCoordRep , unsigned int NRows, unsigned int NCols>
bool	MatrixEqualRMS (const vnl_matrix_fixed< TCoordRep, NRows, NCols > &matrix1, const vnl_matrix_fixed< TCoordRep, NRows, NCols > &matrix2, mitk::ScalarType epsilon=mitk::eps)
	Check for matrix equality using root mean squared error (RMS) of all elements. More...
template<typename TCoordRep , unsigned int NRows, unsigned int NCols>
bool	MatrixEqualRMS (const itk::Matrix< TCoordRep, NRows, NCols > &matrix1, const itk::Matrix< TCoordRep, NRows, NCols > &matrix2, mitk::ScalarType epsilon=mitk::eps)
	Check for matrix equality using root mean squared error (RMS) of all elements. More...
template<typename TCoordRep , unsigned int NRows, unsigned int NCols>
bool	MatrixEqualElementWise (const vnl_matrix_fixed< TCoordRep, NRows, NCols > &matrix1, const vnl_matrix_fixed< TCoordRep, NRows, NCols > &matrix2, mitk::ScalarType epsilon=mitk::eps)
	Check for element-wise matrix equality with a user-defined accuracy. More...
template<typename TCoordRep , unsigned int NRows, unsigned int NCols>
bool	MatrixEqualElementWise (const itk::Matrix< TCoordRep, NRows, NCols > &matrix1, const itk::Matrix< TCoordRep, NRows, NCols > &matrix2, mitk::ScalarType epsilon=mitk::eps)
	Check for element-wise matrix equality with a user-defined accuracy. More...
template<class TTransformType >
void	TransferVtkMatrixToItkTransform (const vtkMatrix4x4 *vtkmatrix, TTransformType *itkTransform)
	Transfer a VTK 4x4 matrix into an ITK transform. More...
template<class TTransformType >
void	TransferItkTransformToVtkMatrix (const TTransformType *itkTransform, vtkMatrix4x4 *vtkmatrix)
	Transfer an ITK transform into a VTK 4x4 matrix. More...
template<class TTransformType1 , class TTransformType2 >
void	ConvertItkTransform (const TTransformType1 *sourceTransform, TTransformType2 *destTransform)
	Convert between two ITK transform types by copying matrix and offset. More...
template<class TMatrixType >
void	GetRotation (const mitk::BaseGeometry *geometry, TMatrixType &itkmatrix)
	Extract the rotation matrix from a geometry, removing spacing. More...
template<class TTransformType >
void	GetWorldToItkPhysicalTransform (const mitk::BaseGeometry *geometry, TTransformType *itkTransform)
	Compute the world-to-ITK-physical-space transform from a geometry. More...
MITKCORE_EXPORT void	swap (MimeType &m1, MimeType &m2)
	Swap two MimeType objects. More...
MITKCORE_EXPORT std::ostream &	operator<< (std::ostream &os, const MimeType &mimeType)
	Stream output operator for MimeType. More...
template<typename T >
std::string	PixelComponentTypeToString ()
	Return the ITK component type name for the given C++ scalar type. More...
template<typename PixelT >
std::string	PixelTypeToString ()
	Return the ITK pixel type name for the given pixel type. More...
MITKCORE_EXPORT mitk::PixelType	MakePixelType (vtkImageData *vtkimagedata)
	Deduce and create a PixelType from a vtkImageData object. More...
template<typename ComponentT , typename PixelT >
PixelType	MakePixelType (std::size_t numOfComponents)
	Create a PixelType from explicit component and pixel type parameters. More...
template<typename ComponentT , typename PixelT , std::size_t numOfComponents>
PixelType	MakePixelType ()
	Create a PixelType with a compile-time number of components. More...
template<typename ItkImageType >
PixelType	MakePixelType (std::size_t numOfComponents)
	Create a MITK PixelType from an ITK image type with a runtime component count. More...
template<typename ItkImageType >
PixelType	MakePixelType ()
	Create a MITK PixelType from an ITK image type with compile-time component count. More...
PixelType	MakePixelType (const itk::ImageIOBase *imageIO)
	Create a MITK PixelType from an itk::ImageIOBase object. More...
template<typename T >
PixelType	MakeScalarPixelType ()
	Create a scalar (single-component) PixelType from a C++ type. More...
template<class TCoordRep , unsigned int NPointDimension>
void	to_json (nlohmann::json &j, const Point< TCoordRep, NPointDimension > &p)
	Serialize a mitk::Point to a JSON array. More...
template<class TCoordRep , unsigned int NPointDimension>
void	from_json (const nlohmann::json &j, Point< TCoordRep, NPointDimension > &p)
	Deserialize a mitk::Point from a JSON array. More...
template<typename TCoordRep , unsigned int NPointDimension>
bool	Equal (const itk::Point< TCoordRep, NPointDimension > &point1, const itk::Point< TCoordRep, NPointDimension > &point2, TCoordRep eps=mitk::eps, bool verbose=false)
	Compare two itk::Point instances for equality within a tolerance. More...
MITKCORE_EXPORT bool	Equal (const mitk::PointSet &leftHandSide, const mitk::PointSet &rightHandSide, mitk::ScalarType eps, bool verbose, bool checkGeometry=true)
	Equal A function comparing two pointsets for being identical. More...
	itkEventMacroDeclaration (PointSetEvent, itk::AnyEvent)
	itkEventMacroDeclaration (PointSetMoveEvent, PointSetEvent)
	itkEventMacroDeclaration (PointSetSizeChangeEvent, PointSetEvent)
	itkEventMacroDeclaration (PointSetAddEvent, PointSetSizeChangeEvent)
	itkEventMacroDeclaration (PointSetRemoveEvent, PointSetSizeChangeEvent)
	itkEventMacroDeclaration (PointSetExtendTimeRangeEvent, PointSetEvent)
	mitkDeclareGenericProperty (BoolProperty, bool, MITKCORE_EXPORT)
	mitkDeclareGenericProperty (IntProperty, int, MITKCORE_EXPORT)
	mitkDeclareGenericProperty (UIntProperty, unsigned int, MITKCORE_EXPORT)
	mitkDeclareGenericProperty (UShortProperty, unsigned short, MITKCORE_EXPORT)
	mitkDeclareGenericProperty (FloatProperty, float, MITKCORE_EXPORT)
	mitkDeclareGenericProperty (DoubleProperty, double, MITKCORE_EXPORT)
	mitkDeclareGenericProperty (Vector3DProperty, Vector3D, MITKCORE_EXPORT)
	mitkDeclareGenericProperty (Point2dProperty, Point2D, MITKCORE_EXPORT)
	mitkDeclareGenericProperty (Point3dProperty, Point3D, MITKCORE_EXPORT)
	mitkDeclareGenericProperty (Point4dProperty, Point4D, MITKCORE_EXPORT)
	mitkDeclareGenericProperty (Point3iProperty, Point3I, MITKCORE_EXPORT)
	mitkDeclareGenericProperty (FloatLookupTableProperty, FloatLookupTable, MITKCORE_EXPORT)
	mitkDeclareGenericProperty (BoolLookupTableProperty, BoolLookupTable, MITKCORE_EXPORT)
	mitkDeclareGenericProperty (IntLookupTableProperty, IntLookupTable, MITKCORE_EXPORT)
	mitkDeclareGenericProperty (StringLookupTableProperty, StringLookupTable, MITKCORE_EXPORT)
MITKCORE_EXPORT std::ostream &	operator<< (std::ostream &os, const PropertyKeyPath &path)
	Stream output operator for PropertyKeyPath. More...
MITKCORE_EXPORT std::string	PropertyKeyPathToPropertyRegEx (const PropertyKeyPath &tagPath)
	Convert a PropertyKeyPath to a regex string for matching property keys. More...
MITKCORE_EXPORT std::string	PropertyKeyPathToPersistenceKeyRegEx (const PropertyKeyPath &tagPath)
	Convert a PropertyKeyPath to a regex string for matching persistence keys. More...
MITKCORE_EXPORT std::string	PropertyKeyPathToPersistenceKeyTemplate (const PropertyKeyPath &tagPath)
	Convert a PropertyKeyPath to a persistence key template string. More...
MITKCORE_EXPORT std::string	PropertyKeyPathToPersistenceNameTemplate (const PropertyKeyPath &tagPath)
	Convert a PropertyKeyPath to a persistence name template string. More...
MITKCORE_EXPORT PropertyKeyPath	PropertyNameToPropertyKeyPath (const std::string &propertyName)
	Convert a property name string to a PropertyKeyPath. More...
MITKCORE_EXPORT std::string	PropertyKeyPathToPropertyName (const PropertyKeyPath &tagPath)
	Convert a PropertyKeyPath to its property name string representation. More...
MITKCORE_EXPORT std::map< PropertyKeyPath::ItemSelectionIndex, std::string >	FindIndexedPropertyNames (const IPropertyProvider *provider, const PropertyKeyPath &path)
	Find indexed entries matching a PropertyKeyPath in a property provider. More...
MITKCORE_EXPORT nlohmann::json	ConvertPropertyListToSelfContainedJson (const mitk::PropertyList *propertyList)
	Serialize all properties from a PropertyList to self contained JSON representations. More...
MITKCORE_EXPORT PropertyList::Pointer	ConvertPropertyListFromSelfContainedJson (const nlohmann::json &json)
	Deserialize a property list from self contained JSON representations. More...
std::string MITKCORE_EXPORT	GeneratePropertyNameForDICOMTag (unsigned int group, unsigned int element)
	Returns the correct property name for a simple DICOM tag. More...
bool MITKCORE_EXPORT	GetDICOMPropertyValue (unsigned int group, unsigned int element, PropertyList const *propertyList, std::string &propertyValue)
	Retrieve a DICOM tag's value as a string from a property list. More...
bool MITKCORE_EXPORT	GetBackwardsCompatibleDICOMPropertyValue (unsigned int group, unsigned int element, std::string const &backwardsCompatiblePropertyName, PropertyList const *propertyList, std::string &propertyValue)
	Retrieve a DICOM property value as a string, with backwards-compatible naming. More...
MITKCORE_EXPORT IPropertyPersistence *	CreateTestInstancePropertyPersistence ()
	Creates an unmanaged (!) instance of PropertyPersistence for testing purposes. More...
MITKCORE_EXPORT std::ostream &	operator<< (std::ostream &os, const PropertyPersistenceInfo &info)
	Stream output operator for PropertyPersistenceInfo. More...
MITKCORE_EXPORT IPropertyRelations *	CreateTestInstancePropertyRelations ()
	Create an unmanaged instance of PropertyRelations for testing purposes. More...
MITKCORE_EXPORT IPropertyTransience *	CreateTestInstancePropertyTransience ()
	Creates an unmanaged (!) instance of PropertyTransience for testing purposes. More...
MITKCORE_EXPORT bool	Equal (const mitk::ProportionalTimeGeometry &leftHandSide, const mitk::ProportionalTimeGeometry &rightHandSide, ScalarType eps, bool verbose)
	Equal A function comparing two ProportionalTimeGeometries for being identical. More...
	itkEventMacroDeclaration (RenderingManagerEvent, itk::AnyEvent)
	itkEventMacroDeclaration (RenderingManagerViewsInitializedEvent, RenderingManagerEvent)
	itkEventMacroDeclaration (FocusChangedEvent, itk::AnyEvent)
MITKCORE_EXPORT bool	EndsWithCaseInsensitive (const std::string &str, const std::string &suffix)
	Case-insensitive check whether str ends with suffix. More...
MITKCORE_EXPORT bool	Equal (mitk::Surface &leftHandSide, mitk::Surface &rightHandSide, mitk::ScalarType eps, bool verbose)
	Equal Compare two surfaces for equality, returns true if found equal. More...
MITKCORE_EXPORT bool	Equal (vtkPolyData &leftHandSide, vtkPolyData &rightHandSide, mitk::ScalarType eps, bool verbose)
	Equal Compare two vtk PolyDatas for equality, returns true if found equal. More...
MITKCORE_EXPORT mitk::Image::Pointer	ConvertSurfaceToLabelMask (const mitk::Image *refImage, const mitk::Surface *surface)
	Convert a surface into a binary mask image suitable for use as segmentation label content. More...
TemporoSpatialStringProperty::Pointer MITKCORE_EXPORT	ExtractTimeStepFromTemporoSpatialStringProperty (const TemporoSpatialStringProperty *tsProperty, TimeStepType ts)
MITKCORE_EXPORT bool	Equal (const mitk::TimeGeometry &leftHandSide, const mitk::TimeGeometry &rightHandSide, ScalarType eps, bool verbose)
	Equal A function comparing two instances of TimeGeometry for being identical. More...
MITKCORE_EXPORT bool	Equal (const mitk::TimeGeometry &leftHandSide, const mitk::TimeGeometry &rightHandSide, ScalarType coordinateEps, ScalarType directionEps, bool verbose)
	Compare two instances of TimeGeometry. More...
template<class TOutputRegion , class TInputRegion >
void	GenerateTimeInInputRegion (const mitk::TimeGeometry *outputTimeGeometry, const TOutputRegion &outputRegion, const mitk::TimeGeometry *inputTimeGeometry, TInputRegion &inputRegion)
	Convert the start- and end-index-time of output-region in start- and end-index-time of input-region via millisecond-time. More...
template<class TOutputData , class TInputData >
void	GenerateTimeInInputRegion (const TOutputData *output, TInputData *input)
	Convert the start- and end-index-time of output in start- and end-index-time of input1 and input2 via millisecond-time. More...
template<class TCoordRep , unsigned int NVectorDimension>
void	to_json (nlohmann::json &j, const Vector< TCoordRep, NVectorDimension > &v)
	Serialize a mitk::Vector to a JSON array. More...
template<class TCoordRep , unsigned int NVectorDimension>
void	from_json (const nlohmann::json &j, Vector< TCoordRep, NVectorDimension > &v)
	Deserialize a mitk::Vector from a JSON array. More...
template<typename TCoordRep , unsigned int NPointDimension>
bool	Equal (const itk::Vector< TCoordRep, NPointDimension > &vector1, const itk::Vector< TCoordRep, NPointDimension > &vector2, TCoordRep eps=mitk::eps, bool verbose=false)
	Compare two itk::Vector instances for equality within a tolerance. More...
bool	Equal (const mitk::VnlVector &vector1, const mitk::VnlVector &vector2, ScalarType eps=mitk::eps, bool verbose=false)
	Compare two VnlVector instances for equality within a tolerance. More...
template<typename TCoordRep , unsigned int NPointDimension>
bool	Equal (const vnl_vector_fixed< TCoordRep, NPointDimension > &vector1, const vnl_vector_fixed< TCoordRep, NPointDimension > &vector2, TCoordRep eps=mitk::eps, bool verbose=false)
	Compare two vnl_vector_fixed instances for equality within a tolerance. More...
TestImageType::Pointer MITKTESTINGHELPER_EXPORT	GenerateTestImage (int factor=1)
	Generate a test ITK image with deterministic intensity values. More...
TestMaskType::Pointer MITKTESTINGHELPER_EXPORT	GenerateTestMask ()
	Generate a binary test mask as an ITK image. More...
Image::Pointer MITKTESTINGHELPER_EXPORT	GenerateTestFrame (double timePoint)
	Generate a single MITK image frame for a specific time point. More...
Image::Pointer MITKTESTINGHELPER_EXPORT	GenerateTestMaskMITK ()
	Generate a test mask as a MITK Image. More...
Image::Pointer MITKTESTINGHELPER_EXPORT	GenerateDynamicTestImageMITK ()
	Generate a 4D dynamic test image as a MITK Image. More...
	itkEventMacroDeclaration (AffineInteractionEvent, itk::AnyEvent)
	Event fired on any affine interaction (translate, rotate, scale). More...
	itkEventMacroDeclaration (ScaleEvent, AffineInteractionEvent)
	Event fired when a scale operation occurs. More...
	itkEventMacroDeclaration (RotateEvent, AffineInteractionEvent)
	Event fired when a rotation operation occurs. More...
	itkEventMacroDeclaration (TranslateEvent, AffineInteractionEvent)
	Event fired when a translation operation occurs. More...
std::string MITKDICOM_EXPORT	GenerateNameFromDICOMProperties (const mitk::IPropertyProvider *provider)
	Generate a human-readable name from DICOM properties of a data object. More...
MITKDICOM_EXPORT mitk::DICOMImageFrameList	ConvertToDICOMImageFrameList (const DICOMDatasetAccessingImageFrameList &input)
	Convert a list of DICOMDatasetAccessingImageFrameInfo to a list of DICOMImageFrameInfo. More...
MITKDICOM_EXPORT mitk::DICOMDatasetList	ConvertToDICOMDatasetList (const DICOMDatasetAccessingImageFrameList &input)
	Convert a list of DICOMDatasetAccessingImageFrameInfo to a raw pointer list of DICOMDatasetAccess. More...
MITKDICOM_EXPORT mitk::DICOMDatasetAccessingImageFrameList	ConvertToDICOMDatasetAccessingImageFrameList (const DICOMDatasetList &input)
	Convert a raw DICOMDatasetList to a list of DICOMDatasetAccessingImageFrameInfo smart pointers. More...
std::string	PixelSpacingInterpretationToString (const PixelSpacingInterpretation &value)
	Convert a PixelSpacingInterpretation enum value to a human readable string. More...
std::string	ReaderImplementationLevelToString (const ReaderImplementationLevel &enumValue)
	Convert a ReaderImplementationLevel enum value to a human readable string. More...
DICOMFilePathList MITKDICOM_EXPORT	GetDICOMFilesInSameDirectory (const std::string &filePath)
	Search a directory for DICOM files. More...
DICOMFilePathList MITKDICOM_EXPORT	FilterForDICOMFiles (const DICOMFilePathList &fileList)
	Filter a file list to contain only valid DICOM files. More...
DICOMFilePathList MITKDICOM_EXPORT	FilterDICOMFilesForSameSeries (const std::string &refFilePath, const DICOMFilePathList &fileList)
	Filter DICOM files to return only those in the same series as a reference file. More...
MITKDICOM_EXPORT mitk::BaseProperty::Pointer	GetDICOMPropertyForDICOMValuesFunctor (const DICOMCachedValueLookupTable &cacheLookupTable)
	Functor to convert collected DICOM tag values into DICOMProperty instances. More...
MITKDICOM_EXPORT std::map< std::string, BaseProperty::ConstPointer >	GetPropertyByDICOMTagPath (const IPropertyProvider *provider, const DICOMTagPath &path)
	Search a property provider for properties matching a DICOM tag path. More...
MITKDICOM_EXPORT std::string	GetFirstDICOMValueAsString (const IPropertyProvider *provider, const DICOMTagPath &path)
	Read the first matching DICOM property's string value. More...
template<typename TNumericReturnType >
TNumericReturnType	ConvertDICOMStrToValue (const std::string &dcmValueString)
	Convert a DICOM property string to a numeric value. More...
template<typename TNumericType >
std::string	ConvertValueToDICOMStr (const TNumericType value)
	Convert a numeric value to a DICOM property string. More...
void	DICOMStringToOrientationVectors (const std::string &s, Vector3D &right, Vector3D &up, bool &successful)
	Convert DICOM string describing a point to two Vector3D instances. More...
bool	DICOMStringToSpacing (const std::string &s, ScalarType &spacingX, ScalarType &spacingY)
	Parse a DICOM spacing string into X and Y spacing values. More...
Point3D	DICOMStringToPoint3D (const std::string &s, bool &successful)
	Convert DICOM string describing a point to Point3D. More...
MITKDICOM_EXPORT std::ostream &	operator<< (std::ostream &os, const DICOMTagPath &path)
	Stream output operator for DICOMTagPath. More...
MITKDICOM_EXPORT DICOMTagPath	operator+ (const std::string &pathStr, const DICOMTagPath &right)
	Concatenates a string with a DICOM tag path (reverse order). More...
MITKDICOM_EXPORT std::string	DICOMTagPathToPropertyRegEx (const DICOMTagPath &tagPath)
	Convert a DICOMTagPath to a regular expression that matches the corresponding property name. More...
MITKDICOM_EXPORT std::string	DICOMTagPathToPersistenceKeyRegEx (const DICOMTagPath &tagPath)
	Convert a DICOMTagPath to a regular expression for persistence key matching. More...
MITKDICOM_EXPORT std::string	DICOMTagPathToPersistenceKeyTemplate (const DICOMTagPath &tagPath)
	Convert a DICOMTagPath to a persistence key template string. More...
MITKDICOM_EXPORT std::string	DICOMTagPathToPersistenceNameTemplate (const DICOMTagPath &tagPath)
	Convert a DICOMTagPath to a persistence name template string. More...
MITKDICOM_EXPORT std::string	DICOMTagPathToDCMTKSearchPath (const DICOMTagPath &tagPath)
MITKDICOM_EXPORT DICOMTagPath	PropertyNameToDICOMTagPath (const std::string &propertyName)
MITKDICOM_EXPORT std::string	DICOMTagPathToPropertyName (const DICOMTagPath &tagPath)
MITKDICOM_EXPORT std::string	DICOMTagPathToReadableName (const DICOMTagPath &tagPath, bool includeTagNumbers=false)
DICOMTagPathMapType MITKDICOM_EXPORT	GetCurrentDICOMTagsOfInterest ()
	Returns the currently registered DICOM tags of interest. More...
DICOMTagPathMapType MITKDICOM_EXPORT	GetDefaultDICOMTagsOfInterest ()
	Returns the default list of DICOM tags of interest. More...
MITKDICOM_EXPORT std::chrono::sys_time< std::chrono::milliseconds >	ConvertOFDateTimeToTimePoint (const OFDateTime &time)
	Convert a DCMTK OFDateTime to a std::chrono time_point. More...
MITKDICOM_EXPORT double	ComputeMiliSecDuration (const OFDateTime &start, const OFDateTime &stop)
	Compute the duration from start to stop in milliseconds. More...
MITKIMAGESTATISTICS_EXPORT ImageStatisticsContainer::ImageStatisticsObject::StatisticNameVector	GetAllStatisticNames (const ImageStatisticsContainer *container)
	Collect all statistic names (default and custom) from a single container. More...
MITKIMAGESTATISTICS_EXPORT ImageStatisticsContainer::ImageStatisticsObject::StatisticNameVector	GetAllStatisticNames (std::vector< ImageStatisticsContainer::ConstPointer > containers)
	Collect all statistic names from a vector of containers. More...
MITKIMAGESTATISTICS_EXPORT DataNode::Pointer	CreateImageStatisticsNode (ImageStatisticsContainer::Pointer statistic, const std::string &name="statistics")
	Create a DataNode wrapping an ImageStatisticsContainer. More...
mitk::NodePredicateBase::Pointer MITKIMAGESTATISTICS_EXPORT	GetImageStatisticsImagePredicate ()
	Get a predicate for the ImageStatistics plugin input image. More...
mitk::NodePredicateBase::Pointer MITKIMAGESTATISTICS_EXPORT	GetImageStatisticsMaskPredicate ()
	Get a predicate for the ImageStatistics plugin input mask. More...
mitk::NodePredicateBase::Pointer MITKIMAGESTATISTICS_EXPORT	GetImageStatisticsPlanarFigurePredicate ()
	Get a predicate for the ImageStatistics plugin planar figure. More...
MITKIMAGESTATISTICS_EXPORT IntensityProfile::Pointer	ComputeIntensityProfile (Image::Pointer image, PlanarFigure::Pointer planarFigure)
	Compute intensity profile of an image for each pixel along the first PolyLine of a given planar figure. More...
MITKIMAGESTATISTICS_EXPORT IntensityProfile::Pointer	ComputeIntensityProfile (Image::Pointer image, PlanarLine::Pointer planarLine, unsigned int numSamples, InterpolateImageFunction::Enum interpolator=InterpolateImageFunction::NearestNeighbor)
	Compute intensity profile of an image for each sample along a planar line. More...
MITKIMAGESTATISTICS_EXPORT IntensityProfile::Pointer	ComputeIntensityProfile (Image::Pointer image, const Point3D &startPoint, const Point3D &endPoint, unsigned int numSamples, InterpolateImageFunction::Enum interpolator=InterpolateImageFunction::NearestNeighbor)
	Compute intensity profile of an image for each sample between two points. More...
MITKIMAGESTATISTICS_EXPORT IntensityProfile::InstanceIdentifier	ComputeGlobalMaximum (IntensityProfile::ConstPointer intensityProfile, IntensityProfile::MeasurementType &max)
	Compute global maximum of an intensity profile. More...
MITKIMAGESTATISTICS_EXPORT IntensityProfile::InstanceIdentifier	ComputeGlobalMinimum (IntensityProfile::ConstPointer intensityProfile, IntensityProfile::MeasurementType &min)
	Compute global minimum of an intensity profile. More...
MITKIMAGESTATISTICS_EXPORT void	ComputeIntensityProfileStatistics (IntensityProfile::ConstPointer intensityProfile, ImageStatisticsContainer::ImageStatisticsObject &stats)
	Compute statistics of an intensity profile. More...
MITKIMAGESTATISTICS_EXPORT IntensityProfile::InstanceIdentifier	ComputeCenterOfMaximumArea (IntensityProfile::ConstPointer intensityProfile, IntensityProfile::InstanceIdentifier radius)
	Compute center of maximum area under the curve of an intensity profile. More...
MITKIMAGESTATISTICS_EXPORT std::vector< IntensityProfile::MeasurementType >	CreateVectorFromIntensityProfile (IntensityProfile::ConstPointer intensityProfile)
	Convert an intensity profile to a standard library vector. More...
MITKIMAGESTATISTICS_EXPORT IntensityProfile::Pointer	CreateIntensityProfileFromVector (const std::vector< IntensityProfile::MeasurementType > &vector)
	Convert a standard library vector to an intensity profile. More...
void MITKLOG_EXPORT	RegisterBackend (LogBackendBase *backend)
	Register a log backend in the MITK log mechanism. More...
void MITKLOG_EXPORT	UnregisterBackend (LogBackendBase *backend)
	Unregister a previously registered log backend. More...
void MITKLOG_EXPORT	DistributeToBackends (LogMessage &message)
	Distribute a log message to all registered and enabled backends. More...
void MITKLOG_EXPORT	EnableBackends (LogBackendBase::OutputType type)
	Enable all backends of the given output type. More...
void MITKLOG_EXPORT	DisableBackends (LogBackendBase::OutputType type)
	Disable all backends of the given output type. More...
bool MITKLOG_EXPORT	IsBackendEnabled (LogBackendBase::OutputType type)
	Check whether backends of the given output type are enabled. More...
MITKMATCHPOINTREGISTRATION_EXPORT Image::Pointer	StitchImages (std::vector< Image::ConstPointer > inputs, std::vector<::map::core::RegistrationBase::ConstPointer > registrations, const BaseGeometry *resultGeometry, const double &paddingValue=0, itk::StitchStrategy stitchStrategy=itk::StitchStrategy::Mean, mitk::ImageMappingInterpolator::Type interpolatorType=mitk::ImageMappingInterpolator::Linear)
	Stitches multiple input images into a single result image using MatchPoint registrations. More...
MITKMATCHPOINTREGISTRATION_EXPORT Image::Pointer	StitchImages (std::vector< Image::ConstPointer > inputs, std::vector< MAPRegistrationWrapper::ConstPointer > registrations, const BaseGeometry *resultGeometry, const double &paddingValue=0, itk::StitchStrategy stitchStrategy=itk::StitchStrategy::Mean, mitk::ImageMappingInterpolator::Type interpolatorType=mitk::ImageMappingInterpolator::Linear)
	Stitches multiple input images using MITK registration wrappers. This is an overloaded member function, provided for convenience. It differs from the above function only in what argument(s) it accepts. More...
MITKMATCHPOINTREGISTRATION_EXPORT Image::Pointer	StitchImages (std::vector< Image::ConstPointer > inputs, const BaseGeometry *resultGeometry, const double &paddingValue=0, itk::StitchStrategy stitchStrategy=itk::StitchStrategy::Mean, mitk::ImageMappingInterpolator::Type interpolatorType=mitk::ImageMappingInterpolator::Linear)
	Stitches multiple input images using identity transforms. This is an overloaded member function, provided for convenience. It differs from the above function only in what argument(s) it accepts.Convenience version that uses identity registrations for all inputs. More...
mitk::MAPRegistrationWrapper::Pointer MITKMATCHPOINTREGISTRATION_EXPORT	GenerateIdentityRegistration3D ()
	Generates a 3D identity registration wrapped as a MAPRegistrationWrapper. More...
	itkEventMacroDeclaration (RegistrationTranslationEvent, itk::AnyEvent)
	itkEventMacroDeclaration (RegistrationRotationEvent, itk::AnyEvent)
	itkEventMacroDeclaration (RegistrationSelectPositionEvent, itk::AnyEvent)
void MITKMATCHPOINTREGISTRATION_EXPORT	GetGridGeometryFromNode (const mitk::DataNode *regNode, mitk::Geometry3D::Pointer &gridDesc, unsigned int &gridFrequ)
	Generate the geometry info used to visualize a registration. More...
vtkSmartPointer< vtkPolyData > MITKMATCHPOINTREGISTRATION_EXPORT	Generate3DDeformationGrid (const mitk::BaseGeometry *gridDesc, unsigned int gridFrequence, const map::core::RegistrationKernelBase< 3, 3 > *regKernel=nullptr)
	Generate a 3D deformation grid for visualizing a MatchPoint registration. More...
vtkSmartPointer< vtkPolyData > MITKMATCHPOINTREGISTRATION_EXPORT	Generate3DDeformationGlyph (const mitk::BaseGeometry *gridDesc, const map::core::RegistrationKernelBase< 3, 3 > *regKernel)
	Generate a 3D glyph representation of a registration kernel. More...
bool MITKMATCHPOINTREGISTRATION_EXPORT	GridIsOutdated (const mitk::DataNode *regNode, const itk::TimeStamp &reference)
	Check if grid-relevant node properties are outdated. More...
bool MITKMATCHPOINTREGISTRATION_EXPORT	PropertyIsOutdated (const mitk::DataNode *regNode, const std::string &propName, const itk::TimeStamp &reference)
	Check if a specific property of a node is outdated. More...
MITKMATCHPOINTREGISTRATION_EXPORT const map::core::RegistrationKernelBase< 3, 3 > *	GetRelevantRegKernelOfNode (const mitk::DataNode *regNode)
	Get the relevant registration kernel for visualization. More...
MITKMATCHPOINTREGISTRATION_EXPORT mitk::DataNode::Pointer	generateRegistrationResultNode (const std::string &nodeName, mitk::MAPRegistrationWrapper::Pointer resultReg, const std::string &algorithmUID, const std::string &movingDataUID, const std::string &targetDataUID)
	Generate a result data node for a registration wrapper. More...
MITKMATCHPOINTREGISTRATION_EXPORT mitk::DataNode::Pointer	generateMappedResultNode (const std::string &nodeName, mitk::BaseData::Pointer mappedData, const std::string &regUID, const std::string &inputDataUID, const bool refinedGeometry, const std::string &interpolator="Unkown")
	Generate a result data node for mapped data. More...
	mapEventMacro (FrameRegistrationEvent, ::map::events::TaskBatchEvent, MITKMATCHPOINTREGISTRATION_EXPORT)
	mapEventMacro (FrameMappingEvent, ::map::events::TaskBatchEvent, MITKMATCHPOINTREGISTRATION_EXPORT)
NodeUIDType MITKMATCHPOINTREGISTRATION_EXPORT	EnsureUID (mitk::DataNode *node)
	Ensures that the given DataNode has a UID property ("matchpoint.UID"). More...
bool MITKMATCHPOINTREGISTRATION_EXPORT	CheckUID (const mitk::DataNode *node, const NodeUIDType &uid)
	Checks whether the UID property of the given DataNode matches the specified UID. More...
NodeUIDType MITKMATCHPOINTREGISTRATION_EXPORT	EnsureUID (mitk::BaseData *data)
	Ensures that the given BaseData has a UID property ("data.UID"). More...
bool MITKMATCHPOINTREGISTRATION_EXPORT	CheckUID (const mitk::BaseData *data, const NodeUIDType &uid)
	Checks whether the UID property of the given BaseData matches the specified UID. More...
MITKMODELFIT_EXPORT ModelBase::TimeGridType	ExtractTimeGrid (const Image *image)
	Extracts the time grid of an image (its time geometry) for usage with models. More...
MITKMODELFIT_EXPORT ModelBase::TimeGridType	ExtractTimeGrid (const TimeGeometry *geometry)
	Extracts the time grid of a time geometry for usage with models. More...
double	fresnel_c (double x)
double	fresnel_s (double x)
double	fresnel_c2 (double x)
double	fresnel_s2 (double x)
MITKMODELFIT_EXPORT std::string	generateModelFitResultImagePath (const std::string &outputPathTemplate, const std::string &parameterName)
MITKMODELFIT_EXPORT void	storeParameterResultImage (const std::string &outputPathTemplate, const std::string &parameterName, mitk::Image *image, mitk::modelFit::Parameter::Type parameterType=mitk::modelFit::Parameter::ParameterType)
MITKMODELFIT_EXPORT void	storeModelFitResultImage (const std::string &outputPathTemplate, const std::string &parameterName, mitk::Image *image, mitk::modelFit::Parameter::Type nodeType, const mitk::modelFit::ModelFitInfo *modelFitInfo)
MITKMODELFIT_EXPORT void	storeModelFitGeneratorResults (const std::string &outputPathTemplate, mitk::ParameterFitImageGeneratorBase *generator, const mitk::modelFit::ModelFitInfo *fitSession)
MITKMODELFIT_EXPORT void	previewModelFitGeneratorResults (const std::string &outputPathTemplate, mitk::ParameterFitImageGeneratorBase *generator)
MITKMODELFIT_EXPORT ModelTraitsInterface::ParameterValueType	ReadVoxel (const mitk::Image *image, const mitk::Point3D &position, unsigned int timestep=0, bool noThrow=true)
MITKMODELFIT_EXPORT ModelTraitsInterface::ParameterValueType	ReadVoxel (const mitk::Image *image, const ::itk::Index< 3 > &index, unsigned int timestep=0, bool noThrow=true)
MITKMODELFIT_EXPORT ParameterValueMapType	ExtractParameterValueMapFromModelFit (const mitk::modelFit::ModelFitInfo *fitInfo, const mitk::Point3D &position)
MITKMODELFIT_EXPORT ParameterValueMapType	ExtractParameterValueMapFromModelFit (const mitk::modelFit::ModelFitInfo *fitInfo, const ::itk::Index< 3 > &index)
MITKMODELFIT_EXPORT ModelTraitsInterface::ParametersType	ConvertParameterMapToParameterVector (const ParameterValueMapType &valueMap, const ModelTraitsInterface *pTraitInterface)
void	CheckYMinMaxFromPlotDataValues (const PlotDataValues &data, double &min, double &max)
void	CheckXMinMaxFromPlotDataValues (const PlotDataValues &data, double &min, double &max)
MITKMODELFIT_EXPORT PlotDataCurve::Pointer	GenerateModelSignalPlotData (const mitk::Point3D &position, const mitk::modelFit::ModelFitInfo *fitInfo, const mitk::ModelBase::TimeGridType &timeGrid, mitk::ModelParameterizerBase *parameterizer=nullptr)
MITKMODELFIT_EXPORT PlotDataCurveCollection::Pointer	GenerateAdditionalModelFitPlotData (const mitk::Point3D &position, const mitk::modelFit::ModelFitInfo *fitInfo, const mitk::ModelBase::TimeGridType &timeGrid)
MITKMODELFIT_EXPORT PlotDataCurve::Pointer	GenerateImageSamplePlotData (const mitk::Point3D &position, const mitk::Image *image, const mitk::ModelBase::TimeGridType &timeGrid)
MITKMODELFIT_EXPORT const std::string	MODEL_FIT_PLOT_SAMPLE_NAME ()
MITKMODELFIT_EXPORT const std::string	MODEL_FIT_PLOT_SIGNAL_NAME ()
MITKMODELFIT_EXPORT const std::string	MODEL_FIT_PLOT_INTERPOLATED_SIGNAL_NAME ()
MITKMODELFIT_EXPORT std::ostream &	operator<< (std::ostream &stream, const ScalarListLookupTable &l)
	Adds the string representation of the given ScalarListLookupTable to the given stream. More...
MITKMODELFIT_EXPORT void	to_json (nlohmann::json &j, const ScalarListLookupTable &lut)
MITKMODELFIT_EXPORT void	from_json (const nlohmann::json &j, ScalarListLookupTable &lut)
	mitkDeclareGenericProperty (ScalarListLookupTableProperty, ScalarListLookupTable, MITKMODELFIT_EXPORT)
	Property type that holds a ScalarListLookupTable value. More...
MITKMODELFIT_EXPORT bool	TimeGridIsMonotonIncreasing (const ModelBase::TimeGridType timeGrid)
	Checks if the time grid is monotonically increasing (timeGrid[n] <= timeGrid[n+1]). More...
MITKMODELFIT_EXPORT ModelBase::ModelResultType	InterpolateSignalToNewTimeGrid (const ModelBase::ModelResultType &inputSignal, const ModelBase::TimeGridType &inputGrid, const ModelBase::TimeGridType &outputGrid)
	Interpolates a signal to a new time grid. More...
MITKMODELFIT_EXPORT ModelBase::TimeGridType	GenerateSupersampledTimeGrid (const mitk::ModelBase::TimeGridType &grid, const unsigned int samplingRate)
	Supersamples a time grid by a given rate, interpolating linearly between original time steps. More...
MITKMULTILABEL_EXPORT bool	Equal (const mitk::Label &leftHandSide, const mitk::Label &rightHandSide, ScalarType eps, bool verbose)
	Equal A function comparing two labels for being equal in data. More...
MITKMULTILABEL_EXPORT bool	Equal (const mitk::MultiLabelSegmentation &leftHandSide, const mitk::MultiLabelSegmentation &rightHandSide, ScalarType eps, bool verbose)
	Equal A function comparing two label set images for being equal in meta- and imagedata. More...
MITKMULTILABEL_EXPORT bool	Equal (const mitk::MultiLabelSegmentation::ConstLabelVectorType &leftHandSide, const mitk::MultiLabelSegmentation::ConstLabelVectorType &rightHandSide, ScalarType eps, bool verbose)
	Equal A function comparing two vectors of labels for being equal in data. More...
MITKMULTILABEL_EXPORT bool	Equal (const mitk::MultiLabelSegmentation::LabelValueVectorType &leftHandSide, const mitk::MultiLabelSegmentation::LabelValueVectorType &rightHandSide, bool orderIsRelevant=false)
	Equal A function comparing two vectors of label values for being equal in data. More...
MITKMULTILABEL_EXPORT void	TransferLabelContentAtTimeStep (const MultiLabelSegmentation *sourceImage, MultiLabelSegmentation *destinationImage, const TimeStepType timeStep, LabelValueMappingVector labelMapping={ {1, 1} }, MultiLabelSegmentation::MergeStyle mergeStyle=MultiLabelSegmentation::MergeStyle::Replace, MultiLabelSegmentation::OverwriteStyle overwriteStlye=MultiLabelSegmentation::OverwriteStyle::RegardLocks)
MITKMULTILABEL_EXPORT void	TransferLabelContent (const MultiLabelSegmentation *sourceImage, MultiLabelSegmentation *destinationImage, LabelValueMappingVector labelMapping={ {1, 1} }, MultiLabelSegmentation::MergeStyle mergeStyle=MultiLabelSegmentation::MergeStyle::Replace, MultiLabelSegmentation::OverwriteStyle overwriteStlye=MultiLabelSegmentation::OverwriteStyle::RegardLocks)
MITKMULTILABEL_EXPORT void	TransferLabelContentAtTimeStep (const Image *sourceImage, Image *destinationImage, const mitk::ConstLabelVector &destinationLabelVector, const TimeStepType timeStep, mitk::Label::PixelType sourceBackground=MultiLabelSegmentation::UNLABELED_VALUE, mitk::Label::PixelType destinationBackground=MultiLabelSegmentation::UNLABELED_VALUE, bool destinationBackgroundLocked=false, LabelValueMappingVector labelMapping={ {1, 1} }, MultiLabelSegmentation::MergeStyle mergeStyle=MultiLabelSegmentation::MergeStyle::Replace, MultiLabelSegmentation::OverwriteStyle overwriteStlye=MultiLabelSegmentation::OverwriteStyle::RegardLocks)
MITKMULTILABEL_EXPORT void	TransferLabelContent (const Image *sourceImage, Image *destinationImage, const mitk::ConstLabelVector &destinationLabelVector, mitk::Label::PixelType sourceBackground=MultiLabelSegmentation::UNLABELED_VALUE, mitk::Label::PixelType destinationBackground=MultiLabelSegmentation::UNLABELED_VALUE, bool destinationBackgroundLocked=false, LabelValueMappingVector labelMapping={ {1, 1} }, MultiLabelSegmentation::MergeStyle mergeStyle=MultiLabelSegmentation::MergeStyle::Replace, MultiLabelSegmentation::OverwriteStyle overwriteStlye=MultiLabelSegmentation::OverwriteStyle::RegardLocks)
MITKMULTILABEL_EXPORT Image::Pointer	ConvertLabelSetImageToImage (MultiLabelSegmentation::ConstPointer labelSetImage)
	Convert mitk::MultiLabelSegmentation to mitk::Image (itk::VectorImage) More...
MITKMULTILABEL_EXPORT MultiLabelSegmentation::Pointer	ConvertImageToLabelSetImage (Image::Pointer image)
	Convert mitk::Image to mitk::MultiLabelSegmentation, templating and differentation between itk::Image and itk::VectorImage is internal. More...
MITKMULTILABEL_EXPORT MultiLabelSegmentation::Pointer	ConvertImageVectorToLabelSetImage (const std::vector< mitk::Image::Pointer > &images, const TimeGeometry *timeGeometry)
MITKMULTILABEL_EXPORT std::vector< mitk::Image::Pointer >	SplitVectorImage (const Image *vecImage)
MITKMULTILABEL_EXPORT MultiLabelSegmentation::LabelVectorType	GenerateLabelSetWithMappedValues (const MultiLabelSegmentation::ConstLabelVectorType &, LabelValueMappingVector labelMapping)
MITKMULTILABEL_EXPORT Image::Pointer	ConvertImageToGroupImage (const Image *inputImage, mitk::MultiLabelSegmentation::LabelValueVectorType &foundLabels)
MITKMULTILABEL_EXPORT unsigned int	CountDistinctForegroundValues (const Image *image, unsigned int limit)
	Counts distinct foreground (non-zero) pixel values, stopping early once limit is reached. More...
MITKMULTILABEL_EXPORT bool	CheckForLabelValueConflictsAndResolve (const mitk::MultiLabelSegmentation::LabelValueVectorType &newValues, mitk::MultiLabelSegmentation::LabelValueVectorType &usedLabelValues, mitk::MultiLabelSegmentation::LabelValueVectorType &correctedLabelValues)
MITKMULTILABEL_EXPORT Image::Pointer	CreateLabelMask (const MultiLabelSegmentation *segmentation, MultiLabelSegmentation::LabelValueType labelValue, bool createBinaryMap=true)
MITKMULTILABEL_EXPORT Image::Pointer	CreateFilteredGroupImage (const MultiLabelSegmentation *segmentation, MultiLabelSegmentation::GroupIndexType groupID, const MultiLabelSegmentation::LabelValueVectorType &selectedLabels)
MITKMULTILABEL_EXPORT std::pair< Image::Pointer, IDToLabelClassNameMapType >	CreateLabelClassMap (const MultiLabelSegmentation *segmentation, MultiLabelSegmentation::GroupIndexType groupID, const MultiLabelSegmentation::LabelValueVectorType &selectedLabels)
	Create a map of all label classes in a specified group. More...
MITKMULTILABEL_EXPORT std::pair< Image::Pointer, IDToLabelClassNameMapType >	CreateLabelClassMap (const MultiLabelSegmentation *segmentation, MultiLabelSegmentation::GroupIndexType groupID)
	Create a map of all label classes in a specified group. More...
mitk::NodePredicateBase::Pointer MITKMULTILABEL_EXPORT	GetMultiLabelSegmentationPredicate (const mitk::BaseGeometry *referenceGeometry=nullptr)
	Creates a predicate that matches valid multi-label segmentation data nodes. More...
mitk::NodePredicateBase::Pointer MITKMULTILABEL_EXPORT	GetSegmentationReferenceImagePredicate ()
	Creates a predicate that matches images suitable as reference for a segmentation. More...
unsigned int MITKMULTILABEL_EXPORT	GetGeometryMismatchedSegmentationCount (const mitk::DataStorage *dataStorage, const mitk::BaseGeometry *referenceGeometry)
	Number of segmentation nodes whose geometry does not fit the reference. More...
double MITKPET_EXPORT	computeSUVScaleFactor (double injectedActivity, double scaleNumerator, double decayTime, double halfLife)
	Compute the generic SUV scale factor. More...
double MITKPET_EXPORT	computeSUVbwScaleFactor (double injectedActivity, double bodyweight, double decayTime, double halfLife)
	Compute the SUV body weight (SUVbw) scale factor. More...
double MITKPET_EXPORT	computeSUVbw (double value, double injectedActivity, double bodyweight, double decayTime, double halfLife)
	Compute the body-weight-normalized SUV (SUVbw) for a single value. More...
ManufacturerFamily MITKPET_EXPORT	GetManufacturerFamily (const mitk::IPropertyProvider *provider)
	Classify the input's (0008,0070) Manufacturer into a family. More...
std::vector< RadiopharmaceuticalInfo > MITKPET_EXPORT	GetRadiopharmaceuticalInfos (const mitk::IPropertyProvider *provider, DICOMReadPolicy policy=DICOMReadPolicy::Lenient)
	Read the Radiopharmaceutical Information Sequence as paired-by-item info. More...
double MITKPET_EXPORT	GetPatientsWeight (const mitk::IPropertyProvider *provider)
	Get the patient's weight from DICOM properties. More...
double MITKPET_EXPORT	GetPatientsHeight (const mitk::IPropertyProvider *provider)
	Get the patient's height (size) from DICOM properties. More...
Sex MITKPET_EXPORT	GetPatientsSex (const mitk::IPropertyProvider *provider)
	Get the patient's sex from DICOM properties as a typed enum. More...
DecayCorrectionStrategy MITKPET_EXPORT	GetDecayCorrectionStrategy (const mitk::IPropertyProvider *provider)
	Detect the DICOM Decay Correction strategy of the input data. More...
DecayCorrectionInfo MITKPET_EXPORT	DeduceDecayCorrection (const mitk::SlicedData *data, double halfLifeSeconds=std::numeric_limits< double >::quiet_NaN(), DICOMReadPolicy policy=DICOMReadPolicy::Lenient)
	Deduce the residual decay correction needed to compute SUV. More...
SUVInputModel MITKPET_EXPORT	ClassifyPETInput (const IPropertyProvider *provider, DICOMReadPolicy policy)
	Classify the input pixel semantics from DICOM properties. More...
std::unique_ptr< SUVNormalizationStrategy > MITKPET_EXPORT	MakeSUVNormalizationStrategy (SUVVariant variant)
	Construct the SUV normalization strategy for the given variant. More...
bool MITKPET_EXPORT	VariantRequiresPatientHeight (SUVVariant variant)
	Whether the given SUV variant's scale numerator depends on the patient's height. More...
bool MITKPET_EXPORT	VariantRequiresPatientSex (SUVVariant variant)
	Whether the given SUV variant's scale numerator depends on the patient's sex. More...
MITKPHARMACOKINETICS_EXPORT ModelBase::StaticParameterValuesType	convertArrayToParameter (itk::Array< double > array)
	Converts an itk::Array<double> into a StaticParameterValuesType (std::vector<double>). More...
MITKPHARMACOKINETICS_EXPORT itk::Array< double >	convertParameterToArray (ModelBase::StaticParameterValuesType parameter)
	Converts a StaticParameterValuesType (std::vector<double>) into an itk::Array<double>. More...
itk::Array< double >	convoluteAIFWithExponential (mitk::ModelBase::TimeGridType timeGrid, mitk::AIFBasedModelBase::AterialInputFunctionType aif, double lambda)
	Convolves the AIF with an exponential residue function using an iterative formula. More...
itk::Array< double >	convoluteAIFWithConstant (mitk::ModelBase::TimeGridType timeGrid, mitk::AIFBasedModelBase::AterialInputFunctionType aif, double constant)
	Convolves the AIF with a constant value using an iterative formula. More...
MITKPLANARFIGURE_EXPORT bool	Equal (const mitk::PlanarFigure &leftHandSide, const mitk::PlanarFigure &rightHandSide, ScalarType eps, bool verbose)
	Compares two PlanarFigure objects with a tolerance for floating-point values. More...
	itkEventMacroDeclaration (PlanarFigureEvent, itk::AnyEvent)
	itkEventMacroDeclaration (StartPlacementPlanarFigureEvent, PlanarFigureEvent)
	itkEventMacroDeclaration (EndPlacementPlanarFigureEvent, PlanarFigureEvent)
	itkEventMacroDeclaration (SelectPlanarFigureEvent, PlanarFigureEvent)
	itkEventMacroDeclaration (StartInteractionPlanarFigureEvent, PlanarFigureEvent)
	itkEventMacroDeclaration (EndInteractionPlanarFigureEvent, PlanarFigureEvent)
	itkEventMacroDeclaration (StartHoverPlanarFigureEvent, PlanarFigureEvent)
	itkEventMacroDeclaration (EndHoverPlanarFigureEvent, PlanarFigureEvent)
	itkEventMacroDeclaration (ContextMenuPlanarFigureEvent, PlanarFigureEvent)
	itkEventMacroDeclaration (PointMovedPlanarFigureEvent, PlanarFigureEvent)
MITKPYTHON_EXPORT std::string	PyQuote (const std::string &value)
	Formats a string as a Python single-quoted string literal. More...
MITKPYTHONINSTALLER_EXPORT void	from_json (const nlohmann::ordered_json &j, PipInstallGroup &g)
MITKPYTHONINSTALLER_EXPORT void	to_json (nlohmann::ordered_json &j, const PipInstallGroup &g)
MITKPYTHONINSTALLER_EXPORT void	from_json (const nlohmann::ordered_json &j, PostInstallStep &s)
MITKPYTHONINSTALLER_EXPORT void	to_json (nlohmann::ordered_json &j, const PostInstallStep &s)
MITKPYTHONINSTALLER_EXPORT void	from_json (const nlohmann::ordered_json &j, PipInstallSpec &s)
MITKPYTHONINSTALLER_EXPORT void	to_json (nlohmann::ordered_json &j, const PipInstallSpec &s)
MITKQTWIDGETS_EXPORT void	PutPreferredDataStorageInspector (const DataStorageInspectorIDType &id)
	Stores the given inspector ID as the preferred (default) inspector. More...
MITKQTWIDGETS_EXPORT DataStorageInspectorIDType	GetPreferredDataStorageInspector ()
	Returns the ID of the preferred data storage inspector. More...
MITKQTWIDGETS_EXPORT void	PutVisibleDataStorageInspectors (const VisibleDataStorageInspectorMapType &inspectors)
	Persists the given map of visible inspectors to preferences. More...
MITKQTWIDGETS_EXPORT VisibleDataStorageInspectorMapType	GetVisibleDataStorageInspectors ()
	Retrieves the currently configured visible inspectors from preferences. More...
MITKQTWIDGETS_EXPORT void	PutShowFavoritesInspector (bool show)
	Persists whether the favorites inspector should be shown. More...
MITKQTWIDGETS_EXPORT bool	GetShowFavoritesInspector ()
	Returns whether the favorites inspector should be shown. More...
MITKQTWIDGETS_EXPORT void	PutShowHistoryInspector (bool show)
	Persists whether the history inspector should be shown. More...
MITKQTWIDGETS_EXPORT bool	GetShowHistoryInspector ()
	Returns whether the history inspector should be shown. More...
MITKREGISTRATIONONTOLOGY_EXPORT void	FindClosestSegmentationMask ()
	Find the closest segmentation mask for lesion propagation. More...
MITKREMESHING_EXPORT Surface::Pointer	Remesh (const Surface *surface, TimeStepType t, int numVertices, double gradation, int subsampling=10, double edgeSplitting=0.0, int optimizationLevel=1, bool forceManifold=false, bool boundaryFixing=false)
	Remesh a surface and store the result in a new surface. More...
MITKRESTAPI_EXPORT const char *	WindowKindToString (WindowKind kind)
MITKRESTAPI_EXPORT const char *	AnatomicalPlaneToV2String (AnatomicalPlane plane)
MITKRESTAPI_EXPORT AnatomicalPlane	ParseV2ViewDirection (const std::string &s)
	Parse the v2 layout schema's view_direction string. More...
MITKRESTAPI_EXPORT std::string	GetRestApiDocumentationUrl (int major, int minor, int patch)
	Build the public docs.mitk.org URL of the REST API specification for a given MITK version. More...
MITKROI_EXPORT void	to_json (nlohmann::json &j, const ROI::Element &roi)
	Serialize a ROI::Element to JSON (nlohmann::json ADL customization point). More...
MITKROI_EXPORT void	from_json (const nlohmann::json &j, ROI::Element &roi)
	Deserialize a ROI::Element from JSON (nlohmann::json ADL customization point). More...
void MITKRT_EXPORT	ConfigureNodeAsDoseNode (mitk::DataNode *doseNode, const mitk::IsoDoseLevelSet *colorPreset, mitk::DoseValueAbs referenceDose, bool showColorWashGlobal=true)
	Configures a DataNode so it is correctly visualized as a dose distribution with color wash. More...
void MITKRT_EXPORT	ConfigureNodeAsIsoLineNode (mitk::DataNode *doseOutlineNode, const mitk::IsoDoseLevelSet *colorPreset, mitk::DoseValueAbs referenceDose, bool showIsolinesGlobal=true)
	Configures a DataNode so it is correctly visualized as dose iso line contours. More...
IsoDoseLevelSet::Pointer MITKRT_EXPORT	GenerateIsoLevels_Virtuos ()
	Generates a predefined set of iso dose levels following the Virtuos color scheme. More...
template<typename NUMBER_TYPE , typename STRING_ARRAY , typename DOUBLE_ARRAY >
void	StringsToNumbers (unsigned int count, const STRING_ARRAY &strings, DOUBLE_ARRAY &numbers)
	Converts an array of string representations to an array of numeric values. More...
MITKSEGMENTATION_EXPORT Image::Pointer	ConvertContourModelSetToLabelMask (const mitk::Image *refImage, mitk::ContourModelSet *contourSet)
	Converts a contour model set into a binary label mask image. More...
MITKSEGMENTATION_EXPORT Image::Pointer	ConvertContourModelToLabelMask (const mitk::Image *refImage, mitk::ContourModel *contourModel)
	Converts a contour model into a binary label mask image. More...
	itkEventMacroDeclaration (ToolEvent, itk::ModifiedEvent)
	Basic tool event without any parameters Can simply be inherited using the itkEventMacro, e.g. More...
MITKSEGMENTATIONUI_EXPORT SceneFileForm	ClassifyTaskListSceneFile (const std::filesystem::path &scenePath)
	Classify a Segmentation Task List Scene.Path by its accepted file form. More...
MITK_GUI_COMMON_PLUGIN IRenderingManager *	MakeRenderingManagerInterface (RenderingManager::Pointer manager)
PixelType	MakePixelType (const pybind11::object &dtype, size_t components=1)

Variables
constexpr char	PATH_ENV_SEPARATOR
constexpr double	NODE_PREDICATE_GEOMETRY_DEFAULT_CHECK_COORDINATE_PRECISION
	The default tolerance for the comparison of spatial/world coordinate equality. More...
constexpr double	NODE_PREDICATE_GEOMETRY_DEFAULT_CHECK_DIRECTION_PRECISION
	The default tolerance for the comparison of direction matrix equality. More...
MITKCORE_EXPORT const ScalarType	eps
	Epsilon value for floating point comparison (vnl_math::eps * 100). More...
MITKCORE_EXPORT const ScalarType	sqrteps
	Square root of epsilon (vnl_math::sqrteps). More...
MITKCORE_EXPORT const double	large
	A large value (std::numeric_limits<ScalarType>::max()). More...
static const int	PixelUserType
	Starting integer value for user-defined pixel types (beyond the built-in ITK pixel types). More...
static const int	PixelComponentUserType
	Starting integer value for user-defined pixel component types (beyond the built-in ITK component types). More...
static const TimeStepType	TIMESTEP_INVALID
	Sentinel value representing an invalid time step. More...
constexpr unsigned int	DEFAULT_UNDO_REDO_LIMIT
	Default maximum number of operations kept on the undo/redo stack. More...
static const std::string	STATS_HISTOGRAM_BIN_PROPERTY_NAME
	Property name for the histogram bin count stored on statistics nodes. More...
static const std::string	STATS_IGNORE_ZERO_VOXEL_PROPERTY_NAME
	Property name indicating whether zero voxels were ignored. More...
static const std::string	STATS_GENERATION_STATUS_PROPERTY_NAME
	Property name for the generation status of the statistics. More...
static const std::string	STATS_GENERATION_STATUS_VALUE_WORK_IN_PROGRESS
	Status value indicating statistics computation is in progress. More...
static const std::string	STATS_GENERATION_STATUS_VALUE_PENDING
	Status value indicating statistics computation is pending. More...
static const std::string	STATS_GENERATION_STATUS_VALUE_BASE_DATA_FAILED
	Status value indicating statistics computation failed. More...
constexpr double	MASK_SUITABILITY_TOLERANCE_COORDINATE
constexpr double	MASK_SUITABILITY_TOLERANCE_DIRECTION
static const char *	replace []
	Dictionary for abbreviating class, module, and namespace names in log output. More...
const char *const	Prop_RegAlgUsed
	Property key storing the UID of the algorithm that was used to determine a registration. More...
const char *const	Prop_RegAlgTargetData
	Property key storing the UID(s) of the data object(s) used as target for determining the registration. More...
const char *const	Prop_RegAlgMovingData
	Property key storing the UID(s) of the data object(s) used as moving objects for determining the registration. More...
const char *const	Prop_RegUID
	Property key storing the UID of the registration instance. More...
const char *const	Prop_MappingInput
	Property key for the input section that specifies what was mapped. More...
const char *const	Prop_MappingInputData
	Property key storing the UID of the data object that was mapped (the source) by the specified registration to generate the current instance. More...
const char *const	Prop_MappingInterpolator
	Property key storing the type of the interpolation strategy that was used to map the object. More...
const char *const	Prop_MappingRefinedGeometry
	Property key indicating that the data was not mapped (resampled) but only had its geometry refined. More...
const char *const	Prop_UID
	Property key for the MatchPoint UID used to uniquely identify a data object. More...
const char *const	nodeProp_UID
	Property key for the MatchPoint UID used to uniquely identify a data node. More...
const char *const	nodeProp_RegVisGrid
	Property key controlling whether a registration grid visualization is shown. More...
const char *const	nodeProp_RegVisGlyph
	Property key controlling whether a glyph-based registration visualization is shown. More...
const char *const	nodeProp_RegVisPoints
	Property key controlling whether a point-based registration visualization is shown. More...
const char *const	nodeProp_RegVisDirection
	Property key specifying the mapping direction for registration visualization (direct or inverse). More...
const char *const	nodeProp_RegVisFOVSize
	Property key for the field-of-view size of the registration visualization. More...
const char *const	nodeProp_RegVisFOVOrigin
	Property key for the field-of-view origin of the registration visualization. More...
const char *const	nodeProp_RegVisFOVSpacing
	Property key for the field-of-view spacing of the registration visualization. More...
const char *const	nodeProp_RegVisFOVOrientation1
	Property key for the first row of the field-of-view orientation matrix. More...
const char *const	nodeProp_RegVisFOVOrientation2
	Property key for the second row of the field-of-view orientation matrix. More...
const char *const	nodeProp_RegVisFOVOrientation3
	Property key for the third row of the field-of-view orientation matrix. More...
const char *const	nodeProp_RegVisGridFrequence
	Property key for the grid frequency (number of grid lines) in registration visualization. More...
const char *const	nodeProp_RegVisGridShowStart
	Property key controlling whether the undeformed start grid is shown alongside the deformed grid. More...
const char *const	nodeProp_RegVisColorStyle
	Property key for the color style used in registration visualization (uniform or vector-magnitude-based). More...
const char *const	nodeProp_RegVisGridStartColor
	Property key for the color of the undeformed start grid. More...
const char *const	nodeProp_RegVisColorUni
	Property key for the uniform color used in registration visualization. More...
const char *const	nodeProp_RegVisColor1Value
	Property key for the first color value in the color transfer function. More...
const char *const	nodeProp_RegVisColor1Magnitude
	Property key for the first magnitude threshold in the color transfer function. More...
const char *const	nodeProp_RegVisColor2Value
	Property key for the second color value in the color transfer function. More...
const char *const	nodeProp_RegVisColor2Magnitude
	Property key for the second magnitude threshold in the color transfer function. More...
const char *const	nodeProp_RegVisColor3Value
	Property key for the third color value in the color transfer function. More...
const char *const	nodeProp_RegVisColor3Magnitude
	Property key for the third magnitude threshold in the color transfer function. More...
const char *const	nodeProp_RegVisColor4Value
	Property key for the fourth color value in the color transfer function. More...
const char *const	nodeProp_RegVisColor4Magnitude
	Property key for the fourth magnitude threshold in the color transfer function. More...
const char *const	nodeProp_RegVisColorInterpolate
	Property key controlling whether colors are interpolated between transfer function control points. More...
const char *const	nodeProp_RegEvalStyle
	Property key for the registration evaluation visualization style (Blend, Checkerboard, Wipe, etc.). More...
const char *const	nodeProp_RegEvalBlendFactor
	Property key for the blend factor used in Blend evaluation style. More...
const char *const	nodeProp_RegEvalCheckerCount
	Property key for the number of checkers used in Checkerboard evaluation style. More...
const char *const	nodeProp_RegEvalWipeStyle
	Property key for the wipe style used in Wipe evaluation mode (Cross, Horizontal, Vertical). More...
const char *const	nodeProp_RegEvalTargetContour
	Property key controlling whether target contour overlay is shown in evaluation. More...
const char *const	nodeProp_RegEvalCurrentPosition
	Property key for the current crosshair position used in evaluation rendering. More...
constexpr double	HIGHLIGHTED_LABEL_OPACITY
	Opacity applied to a hovered/highlighted label by the multi-label mappers. More...
constexpr double	FADED_LABEL_OPACITY
	Opacity floor applied to the other labels while one is hovered/highlighted. More...
constexpr const char *const	PROPERTY_NAME_TIMEGEOMETRY_TYPE
constexpr const char *const	PROPERTY_NAME_TIMEGEOMETRY_TIMEPOINTS
constexpr const char *const	PROPERTY_KEY_TIMEGEOMETRY_TYPE
constexpr const char *const	PROPERTY_KEY_TIMEGEOMETRY_TIMEPOINTS
constexpr const char *const	PROPERTY_KEY_UID

Detailed Description

Find image slices visible on a given plane.

Qmitk.

Render window layer helper functions to retrieve the currently valid layer stack.

Utility functions for managing unique identifiers (UIDs) on DataNodes and BaseData objects.

Property tag constants for registration visualization and evaluation in MITK.

Property tag constants used by the MatchPoint registration framework in MITK.

Helper functions for stitching multiple images into a single result image using MatchPoint registrations.

The class name is not helpful in finding this class. Good suggestions welcome.

Given a PlaneGeometry (e.g. the 2D plane of a render window), this class calculates which slices of an mitk::Image are visible on this plane. Calculation is done for X, Y, and Z direction, the result is available in form of a pair (minimum,maximum) slice index.

Such calculations are useful if you want to display information about the currently visible slice (overlays, statistics, ...) and you don't want to depend on any prior information about hat the renderwindow is currently showing.

Warning

The interface attempts to look like an ITK filter but it is far from being one.

See also

PlaneGeometry BaseGeometry Image

itk::StitchImageFilter, mitk::ImageMappingHelper

These string constants define the property keys that are attached to DataNode and BaseData objects to store MatchPoint-related metadata such as registration algorithm UIDs, input data references, mapping parameters, and unique identifiers.

See also

mitk::MAPRegistrationWrapper, mitk::MITKRegistrationHelper

These string constants define the data node property keys that control how MatchPoint registrations are visualized (grid, glyph, points) and how registration evaluations are rendered (blend, checkerboard, wipe, contour).

See also

mitk::RegVisHelper, mitk::RegEvaluationMapper2D, mitk::MITKRegistrationWrapperMapperBase

These helpers ensure that data nodes and data objects carry a persistent UID property used by the MatchPoint registration framework to track provenance and associations.

See also

mitk::MAPRegistrationWrapper, mitk::mitkMatchPointPropertyTags

Typedef Documentation

ActionVectorType

typedef std::vector<mitk::StateMachineAction::Pointer> mitk::ActionVectorType

Definition at line 29 of file mitkStateMachineTransition.h.

AffineTransform3D

using mitk::AffineTransform3D = typedef itk::ScalableAffineTransform<ScalarType, 3>

3D affine transform type used throughout MITK.

Alias for itk::ScalableAffineTransform with MITK's ScalarType and 3 dimensions.

Definition at line 28 of file mitkAffineTransform3D.h.

BoolList

typedef std::vector<bool> mitk::BoolList

A list of boolean values, used e.g. for tracking per-slice loaded states.

Definition at line 28 of file mitkDICOMEnums.h.

BoolToolEvent

typedef ParameterToolEvent<bool> mitk::BoolToolEvent

Convenience typedef for a tool event carrying a bool parameter.

Definition at line 216 of file mitkToolEvents.h.

BoundingBox

typedef itk::BoundingBox<unsigned long, 3, ScalarType> mitk::BoundingBox

Standard 3D bounding box type.

Convenience typedef that removes template arguments (3D, ScalarType) from itk::BoundingBox for use throughout MITK.

Definition at line 42 of file mitkBaseGeometry.h.

Color

typedef itk::RGBPixel<float> mitk::Color

Standard RGB color typedef using float components.

Each color component (red, green, blue) ranges from 0.0f to 1.0f.

Definition at line 30 of file mitkColorProperty.h.

ConditionVectorType

typedef std::vector<StateMachineCondition> mitk::ConditionVectorType

Definition at line 30 of file mitkStateMachineTransition.h.

ConstLabelVector

using mitk::ConstLabelVector = typedef std::vector<Label::ConstPointer>

Type alias for a vector of const Label smart pointers.

Definition at line 552 of file mitkLabel.h.

DataStorageInspectorIDType

using mitk::DataStorageInspectorIDType = typedef std::string

Type alias for data storage inspector identifiers.

Definition at line 24 of file QmitkNodeSelectionPreferenceHelper.h.

DecayTimeMapType

typedef std::map<mitk::TimeStepType, DecayTimeSliceMapType> mitk::DecayTimeMapType

Map storing per-time-step decay time slice maps.

The outer key is the time step, the inner map stores decay times per slice index.

Definition at line 420 of file mitkSUVCalculationHelper.h.

DecayTimeSliceMapType

typedef std::map<mitk::SlicedData::IndexValueType, double> mitk::DecayTimeSliceMapType

Map storing the residual decay time in seconds per slice.

The key is the slice index (z-index).

Definition at line 413 of file mitkSUVCalculationHelper.h.

DICOMDatasetAccessingImageFrameList

typedef std::vector<DICOMDatasetAccessingImageFrameInfo::Pointer> mitk::DICOMDatasetAccessingImageFrameList

A list of smart pointers to DICOMDatasetAccessingImageFrameInfo instances.

Definition at line 47 of file mitkDICOMDatasetAccessingImageFrameInfo.h.

DICOMDatasetList

typedef std::vector<DICOMDatasetAccess*> mitk::DICOMDatasetList

A list of raw pointers to DICOMDatasetAccess instances.

Definition at line 95 of file mitkDICOMDatasetAccess.h.

DICOMFilePathList

typedef std::vector<std::string> mitk::DICOMFilePathList

A list of file paths used throughout the DICOM module.

Definition at line 24 of file mitkDICOMFilesHelper.h.

DICOMGDCMImageFrameList

typedef std::vector<DICOMGDCMImageFrameInfo::Pointer> mitk::DICOMGDCMImageFrameList

Definition at line 71 of file mitkDICOMGDCMImageFrameInfo.h.

DICOMImageFrameList

typedef std::vector<DICOMImageFrameInfo::Pointer> mitk::DICOMImageFrameList

Definition at line 56 of file mitkDICOMImageFrameInfo.h.

DICOMTagList

typedef std::vector<DICOMTag> mitk::DICOMTagList

A list of DICOMTag instances.

Definition at line 96 of file mitkDICOMTag.h.

DICOMTagPathList

typedef std::vector<DICOMTagPath> mitk::DICOMTagPathList

A list of DICOMTagPath instances.

Definition at line 259 of file mitkDICOMTagPath.h.

DoseValueAbs

typedef double mitk::DoseValueAbs

Represents absolute dose values in Gray (Gy).

Type alias for double, used throughout the RT module to clearly indicate that a value represents an absolute radiation dose.

See also

DoseValueRel

Definition at line 28 of file mitkDoseValueType.h.

DoseValueRel

typedef double mitk::DoseValueRel

Represents relative dose values as a fraction (e.g. 0.95 = 95%).

Type alias for double, used throughout the RT module to clearly indicate that a value represents a relative radiation dose with respect to a reference dose.

See also

DoseValueAbs

Definition at line 38 of file mitkDoseValueType.h.

DoubleVectorProperty

typedef VectorProperty< double > mitk::DoubleVectorProperty

Definition at line 170 of file mitkVectorProperty.h.

DoubleVectorPropertySerializer

typedef VectorPropertySerializer<double> mitk::DoubleVectorPropertySerializer

Convenience typedef for a VectorPropertySerializer specialized for double values.

Definition at line 173 of file mitkVectorPropertySerializer.h.

FastSymmetricForcesDemonsMultiResDefaultRegistrationAlgorithm

template<typename TImageType >

using mitk::FastSymmetricForcesDemonsMultiResDefaultRegistrationAlgorithm = typedef map::algorithm::boxed::ITKFastSymmetricForcesDemonsMultiResRegistrationAlgorithm<TImageType, map::algorithm::mitkFastSymmetricForcesDemonsMultiResDefaultRegistrationAlgorithmUIDPolicy>

Default multi-resolution fast symmetric forces demons registration algorithm.

Type alias for the MatchPoint ITK fast symmetric forces demons multi-resolution registration algorithm with a MITK-specific UID policy.

Template Parameters

TImageType

The ITK image type to register.

Definition at line 33 of file mitkFastSymmetricForcesDemonsMultiResDefaultRegistrationAlgorithm.h.

FixedArrayType

typedef itk::FixedArray<ScalarType, 3> mitk::FixedArrayType

Fixed-size array of three ScalarType values (e.g., for spacing or axis components).

Definition at line 52 of file mitkBaseGeometry.h.

FloatToolEvent

typedef ParameterToolEvent<float> mitk::FloatToolEvent

Convenience typedef for a tool event carrying a float parameter.

Definition at line 213 of file mitkToolEvents.h.

IDToLabelClassNameMapType

using mitk::IDToLabelClassNameMapType = typedef std::map<MultiLabelSegmentation::LabelValueType, std::string>

Definition at line 77 of file mitkLabelSetImageConverter.h.

ImageDimensionVectorType

using mitk::ImageDimensionVectorType = typedef std::vector<unsigned int>

Definition at line 837 of file mitkImage.h.

IntegerToolEvent

typedef ParameterToolEvent<int> mitk::IntegerToolEvent

Convenience typedef for a tool event carrying an int parameter.

Definition at line 210 of file mitkToolEvents.h.

IntensityProfile

typedef itk::Statistics::ListSample<itk::Statistics::MeasurementVectorPixelTraits<ScalarType>::MeasurementVectorType> mitk::IntensityProfile

Definition at line 24 of file mitkIntensityProfile.h.

IntVectorProperty

typedef VectorProperty< int > mitk::IntVectorProperty

Definition at line 171 of file mitkVectorProperty.h.

IntVectorPropertySerializer

typedef VectorPropertySerializer<int> mitk::IntVectorPropertySerializer

Convenience typedef for a VectorPropertySerializer specialized for int values.

Definition at line 175 of file mitkVectorPropertySerializer.h.

IsoDoseLevelVector

typedef ::itk::VectorContainer<unsigned int, mitk::IsoDoseLevel::Pointer> mitk::IsoDoseLevelVector

Definition at line 35 of file mitkIsoDoseLevelCollections.h.

itkIOComponentType

typedef itk::IOComponentEnum mitk::itkIOComponentType

Type alias for the ITK component type enumeration.

Definition at line 208 of file mitkPixelTypeTraits.h.

itkIOPixelType

typedef itk::IOPixelEnum mitk::itkIOPixelType

Type alias for the ITK pixel type enumeration.

Definition at line 205 of file mitkPixelTypeTraits.h.

LabelValueMappingVector

using mitk::LabelValueMappingVector = typedef std::vector < std::pair<Label::PixelType, Label::PixelType> >

Definition at line 797 of file mitkLabelSetImage.h.

LabelVector

using mitk::LabelVector = typedef std::vector<Label::Pointer>

Type alias for a vector of mutable Label smart pointers.

Definition at line 549 of file mitkLabel.h.

LevelSetMotionMultiResDefaultRegistrationAlgorithm

template<typename TImageType >

using mitk::LevelSetMotionMultiResDefaultRegistrationAlgorithm = typedef map::algorithm::boxed::ITKLevelSetMotionMultiResRegistrationAlgorithm<TImageType, map::algorithm::mitkLevelSetMotionMultiResDefaultRegistrationAlgorithmUIDPolicy>

Default multi-resolution level set motion registration algorithm.

Type alias for the MatchPoint ITK level set motion multi-resolution registration algorithm with a MITK-specific UID policy.

Template Parameters

TImageType

The ITK image type to register.

Definition at line 33 of file mitkLevelSetMotionMultiResDefaultRegistrationAlgorithm.h.

Line3D

typedef Line< ScalarType, 3 > mitk::Line3D

Definition at line 490 of file mitkLine.h.

LinearModelParameterizer

typedef ConcreteModelParameterizerBase<mitk::LinearModel> mitk::LinearModelParameterizer

Type alias for the parameterizer of the LinearModel.

See also

LinearModel, LinearModelFactory, ConcreteModelParameterizerBase

Definition at line 26 of file mitkLinearModelParameterizer.h.

MaterialVectorContainer

typedef itk::VectorContainer<unsigned int, Material::Pointer> mitk::MaterialVectorContainer

Definition at line 539 of file mitkMaterial.h.

Matrix2D

typedef Matrix<ScalarType, 2, 2> mitk::Matrix2D

Definition at line 93 of file mitkMatrix.h.

Matrix3D

typedef Matrix<ScalarType, 3, 3> mitk::Matrix3D

Definition at line 94 of file mitkMatrix.h.

Matrix4D

typedef Matrix<ScalarType, 4, 4> mitk::Matrix4D

Definition at line 95 of file mitkMatrix.h.

MultiModalRigidHeadNeckRegistrationAlgorithm

template<class TImageType >

using mitk::MultiModalRigidHeadNeckRegistrationAlgorithm = typedef typename map::algorithm::boxed::MultiModalRigidHeadNeckRegistrationAlgorithm<TImageType, ::map::algorithm::mitkMultiModalRigidHeadNeckRegistrationAlgorithmUIDPolicy>

Rigid head-neck registration algorithm for multi-modal images.

Type alias for the MatchPoint rigid 3D head-neck registration algorithm using Mattes mutual information with a MITK-specific UID policy.

Template Parameters

TImageType

The ITK image type to register.

Definition at line 33 of file mitkMultiModalRigidHeadNeckRegistrationAlgorithm.h.

MultiModalRigidSlabbedHeadRegistrationAlgorithm

template<class TImageType >

using mitk::MultiModalRigidSlabbedHeadRegistrationAlgorithm = typedef typename map::algorithm::boxed::MultiModalRigidSlabbedHeadRegistrationAlgorithm<TImageType, ::map::algorithm::mitkMultiModalRigidSlabbedHeadRegistrationAlgorithmUIDPolicy>

Rigid slabbed-head registration algorithm for multi-modal images.

Type alias for the MatchPoint rigid 3D slabbed-head registration algorithm using Mattes mutual information with a MITK-specific UID policy.

Template Parameters

TImageType

The ITK image type to register.

Definition at line 33 of file mitkMultiModalRigidSlabbedHeadRegistrationAlgorithm.h.

NodeUIDType

typedef std::string mitk::NodeUIDType

Type alias for node/data UID strings.

Definition at line 37 of file mitkUIDHelper.h.

OperationType

typedef int mitk::OperationType

Type alias for operation type identifiers.

Definition at line 24 of file mitkOperation.h.

ParameterValueMapType

using mitk::ParameterValueMapType = typedef std::map<ModelTraitsInterface::ParameterNameType, double>

Definition at line 45 of file mitkModelFitParameterValueExtraction.h.

PlotDataCurveCollection

using mitk::PlotDataCurveCollection = typedef itk::MapContainer<std::string, PlotDataCurve::Pointer>

Collection of plot curves, e.g. every plot curve for a certain world coordinate position

Definition at line 70 of file mitkModelFitPlotDataHelper.h.

PlotDataValues

using mitk::PlotDataValues = typedef std::vector<std::pair<double, double> >

Definition at line 36 of file mitkModelFitPlotDataHelper.h.

Point2D

typedef Point<ScalarType, 2> mitk::Point2D

Definition at line 134 of file mitkPoint.h.

Point2I

typedef Point<int, 2> mitk::Point2I

Definition at line 138 of file mitkPoint.h.

Point3D

typedef Point<ScalarType, 3> mitk::Point3D

Definition at line 135 of file mitkPoint.h.

Point3I

typedef Point<int, 3> mitk::Point3I

Definition at line 139 of file mitkPoint.h.

Point4D

typedef Point<ScalarType, 4> mitk::Point4D

Definition at line 136 of file mitkPoint.h.

Point4I

typedef Point<int, 4> mitk::Point4I

Definition at line 140 of file mitkPoint.h.

Quaternion

typedef vnl_quaternion<ScalarType> mitk::Quaternion

Quaternion type for 3-D rotations, based on vnl_quaternion<ScalarType>.

See also

mitk::ScalarType

Definition at line 36 of file mitkQuaternion.h.

RigidClosedFormPointsDefaultRegistrationAlgorithm

template<typename TPointSetType >

using mitk::RigidClosedFormPointsDefaultRegistrationAlgorithm = typedef typename map::algorithm::boxed::ITKRigid3DClosedFormRegistrationAlgorithmTemplate<TPointSetType, ::map::algorithm::mitkRigidClosedFormPointsDefaultRegistrationAlgorithmUIDPolicy>::Type

Default rigid closed-form point-based registration algorithm.

Type alias for the MatchPoint ITK rigid 3D closed-form registration algorithm operating on point sets with a MITK-specific UID policy.

Template Parameters

TPointSetType

The ITK point set type to register.

Definition at line 33 of file mitkRigidClosedFormPointsDefaultRegistrationAlgorithm.h.

RigidICPDefaultRegistrationAlgorithm

template<typename TPointSetType >

using mitk::RigidICPDefaultRegistrationAlgorithm = typedef map::algorithm::boxed::ITKRigid3DICPRegistrationAlgorithm<TPointSetType, TPointSetType, ::map::algorithm::mitkRigidICPDefaultRegistrationAlgorithmUIDPolicy>

Default rigid ICP (Iterative Closest Point) registration algorithm.

Type alias for the MatchPoint ITK rigid 3D ICP registration algorithm operating on point sets with a MITK-specific UID policy.

Template Parameters

TPointSetType

The ITK point set type to register.

Definition at line 33 of file mitkRigidICPDefaultRegistrationAlgorithm.h.

ScalarType

typedef double mitk::ScalarType

Scalar type used throughout MITK for geometric computations.

Definition at line 21 of file mitkNumericConstants.h.

SpStateMachineState

typedef itk::SmartPointer<StateMachineState> mitk::SpStateMachineState

Definition at line 31 of file mitkStateMachineTransition.h.

StringList

typedef std::vector<std::string> mitk::StringList

A list of strings, used throughout the DICOM module to hold file paths and similar data.

See also

DICOMFilePathList

Definition at line 25 of file mitkDICOMEnums.h.

TestImageType

typedef itk::Image<int> mitk::TestImageType

Definition at line 26 of file mitkTestDynamicImageGenerator.h.

TestMaskType

typedef itk::Image<unsigned char> mitk::TestMaskType

Definition at line 27 of file mitkTestDynamicImageGenerator.h.

TimeBounds

typedef itk::FixedArray<ScalarType, 2> mitk::TimeBounds

Fixed-size array holding a pair of time bound values [min, max] in milliseconds.

Definition at line 47 of file mitkBaseGeometry.h.

TimePointType

typedef mitk::ScalarType mitk::TimePointType

Type for time point values in milliseconds (ms).

Definition at line 27 of file mitkTimeGeometry.h.

TimeStepType

typedef std::size_t mitk::TimeStepType

Type for time step indices (non-negative integers starting from 0).

Definition at line 30 of file mitkTimeGeometry.h.

Vector2D

typedef Vector<ScalarType, 2> mitk::Vector2D

Definition at line 171 of file mitkVector.h.

Vector3D

typedef Vector<ScalarType, 3> mitk::Vector3D

Definition at line 172 of file mitkVector.h.

Vector4D

typedef Vector<ScalarType, 4> mitk::Vector4D

Definition at line 173 of file mitkVector.h.

VisibleDataStorageInspectorMapType

using mitk::VisibleDataStorageInspectorMapType = typedef std::map<unsigned int, DataStorageInspectorIDType>

Map of visible data storage inspectors, keyed by display order.

The map key is the ordering number (0-based) that determines the tab order in the node selection dialog. The value is the inspector's unique ID.

Definition at line 32 of file QmitkNodeSelectionPreferenceHelper.h.

VnlVector

typedef vnl_vector<ScalarType> mitk::VnlVector

Definition at line 176 of file mitkVector.h.

XnatSession

typedef ctkXnatSession mitk::XnatSession

Type alias for ctkXnatSession, registered as a CppMicroServices service interface.

This typedef makes ctkXnatSession available under the mitk namespace and registers it as a micro service with the interface identifier "org.mitk.services.XnatSession". This allows other MITK modules and plugins to discover and track XNAT sessions through the CppMicroServices service registry.

See also

mitk::XnatSessionTracker, ctkXnatSession

Definition at line 32 of file mitkXnatSession.h.

Enumeration Type Documentation

anonymous enum

anonymous enum

Custom data role used to retrieve the underlying mitk::BaseProperty pointer.

Enumerator
PropertyRole	Returns a mitk::BaseProperty* wrapped in QVariant.

Definition at line 32 of file QmitkPropertyItemModel.h.

AnatomicalPlane

enum mitk::AnatomicalPlane

strong

Enumeration of standard anatomical image planes.

Used to specify the orientation of 2D image slices in medical imaging.

Enumerator
Axial	Transverse plane (top-down view, perpendicular to body's long axis).
Sagittal	Plane dividing the body into left and right portions.
Coronal	Frontal plane dividing the body into anterior and posterior portions.
Original	The image's native acquisition plane.

Definition at line 23 of file mitkAnatomicalPlanes.h.

BorderCondition

enum mitk::BorderCondition

Specifies the boundary condition for image padding in wavelet transforms.

See also

TransformationOperation::WaveletForward

Enumerator
Constant	Constant (zero) boundary padding.
Periodic	Periodic (wrap-around) boundary padding.
ZeroFluxNeumann	Zero-flux Neumann boundary padding (gradient is zero at boundary).

Definition at line 27 of file mitkTransformationOperation.h.

ClientAccessMode

enum mitk::ClientAccessMode

strong

Access mode for client IP filtering.

See also

RestServerConfig

Enumerator
LocalhostOnly	Only accept connections from 127.0.0.1 and ::1 (default).
AllowAll	Accept connections from any IP (not recommended without authentication).
Whitelist	Accept connections only from explicitly listed IPs.

Definition at line 27 of file mitkRestServerConfig.h.

DecayCorrectionStrategy

enum mitk::DecayCorrectionStrategy

strong

Strategy describing how (or whether) the input pixel data has been decay-corrected by the scanner.

Mirrors the values defined for DICOM tag (0054,1102) Decay Correction. Determines which reference time the helper must use when computing the residual decay correction needed for SUV.

Enumerator
Admin	Pixel data is already decay-corrected to the radiopharmaceutical administration time. No further correction is needed.
Start	Pixel data is decay-corrected to the Series Time (DICOM (0008,0031)).
None	Pixel data is not decay-corrected. The residual correction uses the per-slice acquisition date and time.
Manual	Decay time supplied manually (e.g., CLI override); not derived from DICOM.

Definition at line 394 of file mitkSUVCalculationHelper.h.

DICOMReadPolicy

enum mitk::DICOMReadPolicy

strong

Policy controlling whether benchmark-recommended adaptations of borderline / non-spec DICOM input are applied.

The IBSI-SUV benchmark catalogues several recommendations that help MITK accept real-world PET DICOM data without losing physical meaning (unit reinterpretation, vendor-specific fallbacks, etc.). Each recommendation has a clearly bounded trigger (an empirically empty value range, a specific vendor private tag, …) and is therefore safe to apply in routine processing — but validation, regulatory, or strict-conformance contexts may want to refuse the adaptation and surface the underlying input issue instead.

Lenient Apply the recommendation; emit MITK_WARN so the adaptation can be audited downstream. Default. Strict Refuse to adapt; raise a BenchmarkAdaptationRequiredException (or a category-specific subtype).

The policy applies uniformly across all helpers that consult it. Per-rule overrides are not supported: if you need finer control, inspect the input upstream and pre-validate the offending tags.

See also

BenchmarkAdaptationRequiredException

Enumerator
Lenient
Strict

Definition at line 343 of file mitkSUVCalculationHelper.h.

EActions

enum mitk::EActions

Constants for EventMapping (ActionIds).

Connects the statemachine.xml file with the implemented conditions. Within one statemachine the choice of the action constants is free.

Enumerator
AcDONOTHING
AcINITNEWOBJECT
AcINITEDITOBJECT
AcINITEDITGROUP
AcINITMOVEMENT
AcINITMOVE
AcINITFOREGROUND
AcINITBACKGROUND
AcINITNEUTRAL
AcINITUPDATE
AcADDPOINT
AcADDPOINTRMB
AcADD
AcADDLINE
AcADDANDFINISH
AcADDSELECTEDTOGROUP
AcCHECKPOINT
AcCHECKLINE
AcCHECKCELL
AcCHECKELEMENT
AcCHECKOBJECT
AcCHECKNMINUS1
AcCHECKEQUALS1
AcCHECKNUMBEROFPOINTS
AcCHECKSELECTED
AcCHECKONESELECTED
AcCHECKHOVERING
AcCHECKGREATERZERO
AcCHECKGREATERTWO
AcCHECKOPERATION
AcCHECKONESUBINTERACTOR
AcCHECKSUBINTERACTORS
AcFINISHOBJECT
AcFINISHGROUP
AcFINISHMOVEMENT
AcFINISHMOVE
AcFINISH
AcSEARCHOBJECT
AcSEARCHGROUP
AcSEARCHANOTHEROBJECT
AcSELECTPICKEDOBJECT
AcSELECTANOTHEROBJECT
AcSELECTGROUP
AcSELECTALL
AcSELECT
AcSELECTPOINT
AcSELECTLINE
AcSELECTCELL
AcSELECTSUBOBJECT
AcDESELECTOBJECT
AcDESELECTALL
AcDESELECT
AcDESELECTPOINT
AcDESELECTLINE
AcDESELECTCELL
AcNEWPOINT
AcNEWSUBOBJECT
AcMOVEPOINT
AcMOVESELECTED
AcMOVE
AcMOVEPOINTUP
AcMOVEPOINTDOWN
AcREMOVEPOINT
AcREMOVE
AcREMOVELINE
AcREMOVEALL
AcREMOVESELECTEDSUBOBJECT
AcWHEEL
AcPLUS
AcMINUS
AcDELETEPOINT
AcCLEAR
AcINSERTPOINT
AcINSERTLINE
AC_SET_NEXT_BUTTON_VISIBLE
AC_SET_NEXT_BUTTON_INVISIBLE
AC_SET_PREVIOUS_BUTTON_VISIBLE
AC_SET_PREVIOUS_BUTTON_INVISIBLE
AC_SET_ASSISTAND_WIDGET_STECK
AC_SETMAX_COUNT_REF_POINTS
AC_SET_NEXT_BUTTON_TEXT
AC_CHECK_LANDMARK_COUNT
AC_SET_DONE_FALSE
AC_INIT
AC_SET_APPLICATION_SELECTED_FALSE
AC_SENSOR_ATTACHED
AC_CLOSE_ASSISTENT
AC_START_APPLICATION_TEXT
AC_START_NAVIGATION
AC_START_PATHCOLLECTION
AC_LOAD_LANDMARKS
AC_CALCULATE_LANDMARK_TRANSFORM
AcTERMINATE_INTERACTION
AcTRANSLATESTART
AcTRANSLATE
AcSCALESTART
AcSCALE
AcROTATESTART
AcROTATE
AcINITAFFINEINTERACTIONS
AcFINISHAFFINEINTERACTIONS
AcTRANSLATEEND
AcSCALEEND
AcROTATEEND
AcINITZOOM
AcZOOM
AcSCROLL
AcLEVELWINDOW
AcSCROLLMOUSEWHEEL
AcSETSTARTPOINT
AcMODEDESELECT
AcMODESELECT
AcMODESUBSELECT
AcINFORMLISTENERS
AcASKINTERACTORS
AcCHECKGREATERONE
AcCHECKBOUNDINGBOX
AcFORCESUBINTERACTORS
AcSENDCOORDINATES
AcTRANSMITEVENT
AcPERIPHERYSEARCH
AcROOTSEARCH
AcTHICKSTVESSELSEARCH
AcSHORTESTPATHSEARCH
AcSINGLE
AcATTRIBUTATION
AcDEFAULT
AcSETVESSELELEMENT
AcCHECKBARRIERSTATUS
AcUPDATEMESH
AcINCREASE
AcDECREASE
AcMODIFY
AcUNDOUPDATE
AcENTEROBJECT
AcLEAVEOBJECT
AcSWITCHOBJECT
AcUPDATELINE
AcINITLINE
AcTERMINATELINE
AcCREATEBOX
AcCREATEOBJECTFROMLINE
AcCANCEL
AcACTIVATETOOL
AcROTATEAROUNDPOINT1
AcROTATEAROUNDPOINT2
AcMOVEPOINT1
AcMOVEPOINT2
AcUPDATEPOINT
AcUPDATERADIUSMOUSEWHEEL
AcDISPLAYOPTIONS
AcCYCLE
AcACCEPT
AcCHECKPOSITION
AcINITIALIZECONTOUR
AcCALCULATENEWSEGMENTATION_SP
AcINTERACTOR
AcCALCULATENEWSEGMENTATION_BB

Definition at line 248 of file mitkInteractionConst.h.

EButtonStates

enum mitk::EButtonStates

Mouse/keyboard button state values.

QT combinations if MOUSEBUTTONRelease: left MouseButton + ControlButton: 0x201

Enumerator
BS_NoButton
BS_LeftButton
BS_RightButton
BS_MidButton
BS_MouseButtonMask
BS_ShiftButton
BS_ControlButton
BS_AltButton
BS_MetaButton
BS_KeyButtonMask
BS_Keypad

Definition at line 499 of file mitkInteractionConst.h.

EEventIds

enum mitk::EEventIds

Constants for EventIds; use the corresponding constant to throw an event in the code.

Enumerator
EIDNULLEVENT
EIDLEFTMOUSEBTN
EIDRIGHTMOUSEBTN
EIDLEFTMOUSEBTNANDSHIFT
EIDMIDDLEMOUSEBTN
EIDLEFTMOUSEBTNANDCTRL
EIDMIDDLEMOUSEBTNANDCTRL
EIDRIGHTMOUSEBTNANDCTRL
EIDLEFTMOUSEBTNDOUBLECLICK
EIDMOUSEWHEEL
EIDLEFTMOUSERELEASE
EIDMIDDLEMOUSERELEASE
EIDRIGHTMOUSERELEASE
EIDLEFTMOUSERELEASEANDSHIFT
EIDMOUSEMOVE
EIDLEFTMOUSEBTNANDMOUSEWHEEL
EIDRIGHTMOUSEBTNANDMOUSEWHEEL
EIDMIDDLEMOUSEBTNANDMOUSEWHEEL
EIDLEFTMOUSEBTNANDMOUSEMOVE
EIDRIGHTMOUSEBTNANDMOUSEMOVE
EIDMIDDLEMOUSEBTNANDMOUSEMOVE
EIDCTRLANDLEFTMOUSEBTNANDMOUSEMOVE
EIDCTRLANDRIGHTMOUSEBTNANDMOUSEMOVE
EIDCTRLANDMIDDLEMOUSEBTNANDMOUSEMOVE
EIDCTRLANDLEFTMOUSEBTNRELEASE
EIDCTRLANDRIGHTMOUSEBTNRELEASE
EIDCTRLANDMIDDLEMOUSEBTNRELEASE
EIDSHIFTANDCTRLANDMIDDLEMOUSEBTN
EIDSHIFTANDLEFTMOUSEBTNANDMOUSEMOVE
EIDSHIFTANDCTRLANDMOUSEMOVE
EIDSHIFTANDCTRLANDMOUSERELEASE
EIDALTANDLEFTMOUSEBTN
EIDALTANDLEFTMOUSEBTNANDMOUSEMOVE
EIDALTANDLEFTMOUSERELEASE
EIDCTRLANDLEFTMOUSEWHEEL
EIDALTANDMOUSEWHEEL
EIDALTANDMIDDLEMOUSEBTN
EIDALTANDMIDDLEMOUSEBTNANDMOVE
EIDALTANDMIDDLEMOUSEBTNRELEASE
EIDALTANDSHIFTANDRIGHTMOUSEBTN
EIDALTANDSHIFTANDRIGHTMOUSEBTNANDMOUSEMOVE
EIDALTANDSHIFTANDRIGHTMOUSEBTNRELEASE
EIDSHIFTANDRIGHTMOUSEPRESS
EIDSHIFTANDRIGHTMOUSEMOVE
EIDSHIFTANDRIGHTMOUSERELEASE
EIDSHIFTANDMIDDLEMOUSEPRESS
EIDSHIFTANDMIDDLEMOUSEMOVE
EIDSHIFTANDMIDDLEMOUSERELEASE
EIDSTRGANDN
EIDSTRGANDE
EIDDELETE
EIDN
EIDESCAPE
EIDP
EIDR
EIDT
EIDS
EIDE
EIDSTRGANDALTANDA
EIDSTRGANDALTANDB
EIDH
EIDRETURN
EIDENTER
EIDSPACE
EIDPLUS
EIDMINUS
EIDSTRGANDALTANDH
EIDSTRGANDALTANDI
EIDSTRGANDALTANDS
EIDALT
EIDSTRGANDB
EIDNEW
EIDOLD
EIDFINISHED
EIDNO
EIDYES
EIDSAME
EIDNOANDLASTOBJECT
EIDNOANDNOTLASTOBJECT
EIDLAST
EIDNOTLAST
EIDSTSMALERNMINUS1
EIDSTLARGERNMINUS1
EIDPOSITIONEVENT
EIDEDIT
EIDSMALLERN
EIDEQUALSN
EIDLARGERN
EIDEMPTY
EIDSUBDESELECT
EIDSMTOSELECTED
EIDSMTODESELECTED
EIDTIP
EIDHEAD
EIDBODY
EIDCLEAR
EIDACTIVATETOOL
EIDPRINT
EV_INIT
EV_PREVIOUS
EV_PATH_COLLECTION_SELECTED
EV_NAVIGATION_SELECTED
EV_LESS_THEN_MIN_COUNT
EV_READY
EV_NEXT
EV_DONE
EV_NEW_LANDMARK
EV_REMOVE_LANDMARK
EIDINSIDE
EIDA
EIDB
EIDC
EIDD
EIDF
EIDG
EIDI
EIDJ
EIDK
EIDL
EIDM
EIDO
EIDQ
EIDU
EIDV
EIDW
EIDX
EIDY
EIDZ
EID1
EID2
EID3
EID4
EID5
EID6
EID7
EID8
EID9
EID0
EIDFIGUREHOVER
EIDNOFIGUREHOVER

Definition at line 37 of file mitkInteractionConst.h.

EEventType

enum mitk::EEventType

Type of an Event.

Enumerator
Type_None
Type_Timer
Type_MouseButtonPress
Type_MouseButtonRelease
Type_MouseButtonDblClick
Type_MouseMove
Type_KeyPress
Type_KeyRelease
Type_FocusIn
Type_FocusOut
Type_Enter
Type_Leave
Type_Paint
Type_Move
Type_Resize
Type_Create
Type_Destroy
Type_Show
Type_Hide
Type_Close
Type_Quit
Type_Reparent
Type_ShowMinimized
Type_ShowNormal
Type_WindowActivate
Type_WindowDeactivate
Type_ShowToParent
Type_HideToParent
Type_ShowMaximized
Type_ShowFullScreen
Type_Accel
Type_Wheel
Type_AccelAvailable
Type_CaptionChange
Type_IconChange
Type_ParentFontChange
Type_ApplicationFontChange
Type_ParentPaletteChange
Type_ApplicationPaletteChange
Type_PaletteChange
Type_Clipboard
Type_Speech
Type_SockAct
Type_AccelOverride
Type_DeferredDelete
Type_DragEnter
Type_DragMove
Type_DragLeave
Type_Drop
Type_DragResponse
Type_ChildInserted
Type_ChildRemoved
Type_LayoutHint
Type_ShowWindowRequest
Type_ActivateControl
Type_DeactivateControl
Type_ContextMenu
Type_IMStart
Type_IMCompose
Type_IMEnd
Type_Accessibility
Type_TabletMove
Type_LocaleChange
Type_LanguageChange
Type_LayoutDirectionChange
Type_Style
Type_TabletPress
Type_TabletRelease
Type_User
Type_MaxUser

Definition at line 421 of file mitkInteractionConst.h.

EKeys

enum mitk::EKeys

Key constants mirroring Qt key codes.

Enumerator
Key_Escape
Key_Tab
Key_Backtab
Key_BackTab
Key_Backspace
Key_BackSpace
Key_Return
Key_Enter
Key_Insert
Key_Delete
Key_Pause
Key_Print
Key_SysReq
Key_Home
Key_End
Key_Left
Key_Up
Key_Right
Key_Down
Key_Prior
Key_PageUp
Key_Next
Key_PageDown
Key_Shift
Key_Control
Key_Meta
Key_Alt
Key_CapsLock
Key_NumLock
Key_ScrollLock
Key_F1
Key_F2
Key_F3
Key_F4
Key_F5
Key_F6
Key_F7
Key_F8
Key_F9
Key_F10
Key_F11
Key_F12
Key_F13
Key_F14
Key_F15
Key_F16
Key_F17
Key_F18
Key_F19
Key_F20
Key_F21
Key_F22
Key_F23
Key_F24
Key_F25
Key_F26
Key_F27
Key_F28
Key_F29
Key_F30
Key_F31
Key_F32
Key_F33
Key_F34
Key_F35
Key_Super_L
Key_Super_R
Key_Menu
Key_Hyper_L
Key_Hyper_R
Key_Help
Key_Muhenkan
Key_Henkan
Key_Hiragana_Katakana
Key_Zenkaku_Hankaku
Key_Space
Key_Any
Key_Exclam
Key_QuoteDbl
Key_NumberSign
Key_Dollar
Key_Percent
Key_Ampersand
Key_Apostrophe
Key_ParenLeft
Key_ParenRight
Key_Asterisk
Key_Plus
Key_Comma
Key_Minus
Key_Period
Key_Slash
Key_0
Key_1
Key_2
Key_3
Key_4
Key_5
Key_6
Key_7
Key_8
Key_9
Key_Colon
Key_Semicolon
Key_Less
Key_Equal
Key_Greater
Key_Question
Key_At
Key_A
Key_B
Key_C
Key_D
Key_E
Key_F
Key_G
Key_H
Key_I
Key_J
Key_K
Key_L
Key_M
Key_N
Key_O
Key_P
Key_Q
Key_R
Key_S
Key_T
Key_U
Key_V
Key_W
Key_X
Key_Y
Key_Z
Key_BracketLeft
Key_Backslash
Key_BracketRight
Key_AsciiCircum
Key_Underscore
Key_QuoteLeft
Key_BraceLeft
Key_Bar
Key_BraceRight
Key_AsciiTilde
Key_nobreakspace
Key_exclamdown
Key_cent
Key_sterling
Key_currency
Key_yen
Key_brokenbar
Key_section
Key_diaeresis
Key_copyright
Key_ordfeminine
Key_guillemotleft
Key_notsign
Key_hyphen
Key_registered
Key_macron
Key_degree
Key_plusminus
Key_twosuperior
Key_threesuperior
Key_acute
Key_mu
Key_paragraph
Key_periodcentered
Key_cedilla
Key_onesuperior
Key_masculine
Key_guillemotright
Key_onequarter
Key_onehalf
Key_threequarters
Key_questiondown
Key_Agrave
Key_Aacute
Key_Acircumflex
Key_Atilde
Key_Adiaeresis
Key_Aring
Key_AE
Key_Ccedilla
Key_Egrave
Key_Eacute
Key_Ecircumflex
Key_Ediaeresis
Key_Igrave
Key_Iacute
Key_Icircumflex
Key_Idiaeresis
Key_ETH
Key_Ntilde
Key_Ograve
Key_Oacute
Key_Ocircumflex
Key_Otilde
Key_Odiaeresis
Key_multiply
Key_Ooblique
Key_Ugrave
Key_Uacute
Key_Ucircumflex
Key_Udiaeresis
Key_Yacute
Key_THORN
Key_ssharp
Key_agrave
Key_aacute
Key_acircumflex
Key_atilde
Key_adiaeresis
Key_aring
Key_ae
Key_ccedilla
Key_egrave
Key_eacute
Key_ecircumflex
Key_ediaeresis
Key_igrave
Key_iacute
Key_icircumflex
Key_idiaeresis
Key_eth
Key_ntilde
Key_ograve
Key_oacute
Key_ocircumflex
Key_otilde
Key_odiaeresis
Key_division
Key_oslash
Key_ugrave
Key_uacute
Key_ucircumflex
Key_udiaeresis
Key_yacute
Key_thorn
Key_ydiaeresis
Key_unknown
Key_none

Definition at line 514 of file mitkInteractionConst.h.

EOperations

enum mitk::EOperations

Constants for Operations. Comments are always examples of the usage.

Enumerator
OpNOTHING
OpTEST
OpNEWCELL
OpADD
OpUNDOADD
OpADDLINE
OpINSERT
OpINSERTLINE
OpINSERTPOINT
OpCLOSECELL
OpOPENCELL
OpMOVE
OpMOVELINE
OpMOVECELL
OpUNDOMOVE
OpMOVEPOINTUP
OpMOVEPOINTDOWN
OpREMOVE
OpREMOVELINE
OpREMOVECELL
OpREMOVEPOINT
OpDELETE
OpDELETELINE
OpUNDELETE
OpDELETECELL
OpSTATECHANGE
OpTIMECHANGE
OpTERMINATE
OpSELECTPOINT
OpSELECTLINE
OpSELECTCELL
OpSELECTSUBOBJECT
OpSELECT
OpDESELECTPOINT
OpDESELECTLINE
OpDESELECTCELL
OpDESELECTSUBOBJECT
OpDESELECTALL
OpDESELECT
OpNAVIGATE
OpZOOM
OpSCALE
OpROTATE
OpORIENT
OpRESTOREPLANEPOSITION
OpAPPLYTRANSFORMMATRIX
OpSETPOINTTYPE
OpMODECHANGE
OpSENDCOORDINATES
OpPERIPHERYSEARCH
OpROOTSEARCH
OpTHICKSTVESSELSEARCH
OpSHORTESTPATHSEARCH
OpATTRIBUTATION
OpDEFAULT
OpSURFACECHANGED

Definition at line 182 of file mitkInteractionConst.h.

FileAccessMode

enum mitk::FileAccessMode

strong

Access mode for file system path restrictions.

See also

RestServerConfig

Enumerator
Unrestricted	No file path restrictions (default).
AllowedDirectories	Only allow paths under configured directories.

Definition at line 39 of file mitkRestServerConfig.h.

GridInterpolationPositionType

enum mitk::GridInterpolationPositionType

Specifies how the resampled grid is positioned relative to the original image.

See also

TransformationOperation::ResampleImage, TransformationOperation::ResampleMask

Enumerator
SameSize	Adjust spacing so the resampled image has the same physical extent (number of voxels may change).
OriginAligned	Keep the origin aligned; the output extent may differ from the input.
CenterAligned	Center-align the resampled grid so the image center is preserved.

Definition at line 50 of file mitkTransformationOperation.h.

Hierarchy

enum mitk::Hierarchy

strong

Enumeration for hierarchy filter used in node queries.

Controls whether all nodes or only top-level (root) nodes are returned from a GET /datastorage/nodes request.

See also

NodeQueryParams

Enumerator
All	Return all nodes in the DataStorage.
Toplevel	Return only root nodes (nodes with no parent).

Definition at line 32 of file mitkNodeQueryParams.h.

LogLevel

enum mitk::LogLevel

strong

Severity levels for log messages in the MITK log mechanism.

Each level represents a different severity of log event. Backends may use these levels to filter, format, or colorize output. The levels are ordered by severity from least to most critical: Debug < Info < Warn < Error < Fatal.

See also

LogMessage, PseudoLogStream

Enumerator
Info	Informational message for general progress and status updates.
Warn	Warning about a potential problem that does not prevent operation.
Error	An error occurred but the application may continue.
Fatal	A critical error that typically requires the application to terminate.
Debug	Verbose diagnostic message, only emitted when MITK_ENABLE_DEBUG_MESSAGES is defined.

Definition at line 26 of file mitkLogLevel.h.

ManufacturerFamily

enum mitk::ManufacturerFamily

strong

Manufacturer family inferred from DICOM tag (0008,0070) Manufacturer.

The IBSI-SUV-conformant decay-correction pipeline branches on manufacturer family (Siemens / GE / Philips use different vendor private datetime tags or different reference-time formulas). The classification is substring-and-case-insensitive on the trimmed (0008,0070) string: typical real-world values include "SIEMENS Healthineers", "GE MEDICAL SYSTEMS", "GE HEALTHCARE", "Philips Medical Systems".

Other covers any unrecognized or empty value. The IBSI-SUV benchmark spec is silent for these vendors; consuming strategies must surface this honestly (e.g. raise AmbiguousDecayTimingException) rather than silently extend a vendor-specific formula to an input we cannot classify.

Enumerator
Siemens
GE
Philips
Other

Definition at line 366 of file mitkSUVCalculationHelper.h.

PackageStatus

enum mitk::PackageStatus

strong

Status of a single package during installation.

Enumerator
Pending
Installing
Installed
Failed

Definition at line 26 of file mitkPipPackageInfo.h.

PointSpecificationType

enum mitk::PointSpecificationType

Enumeration of point specification types.

Describes the role of a point within a geometric structure (e.g. start, corner, edge, end).

Enumerator
PTUNDEFINED
PTSTART
PTCORNER
PTEDGE
PTEND

Definition at line 30 of file mitkPoint.h.

ProcessEventMode

enum mitk::ProcessEventMode

Enumerator
REGULAR
GRABINPUT
PREFERINPUT
CONNECTEDMOUSEACTION

Definition at line 34 of file mitkDataInteractor.h.

PropertyScope

enum mitk::PropertyScope

strong

Enumeration for property scope in REST API queries.

Determines which property lists are searched when filtering or returning properties. Node properties come from the DataNode's property list; data properties come from the BaseData's property list.

See also

PropertyQueryParams, NodeQueryParams

Enumerator
All	Both node and data properties (node takes precedence on conflicts).
Node	Only properties from the DataNode's property list.
Data	Only properties from the BaseData's property list.

Definition at line 47 of file mitkNodeQueryParams.h.

RandomImageSamplerMode

enum mitk::RandomImageSamplerMode

Enumeration of sampling modes for RandomImageSampler.

Enumerator
SINGLE_ACCEPTANCE_RATE	Sample all labels with a single acceptance rate.
CLASS_DEPENDEND_ACCEPTANCE_RATE	Sample each class with an individual acceptance rate.
SINGLE_NUMBER_OF_ACCEPTANCE	Draw a fixed total number of samples.
CLASS_DEPENDEND_NUMBER_OF_ACCEPTANCE	Draw a fixed number of samples per class.

Definition at line 25 of file mitkRandomImageSampler.h.

SceneFileForm

enum mitk::SceneFileForm

strong

The scene file forms a Segmentation Task List accepts as a Scene.Path.

See also

ClassifyTaskListSceneFile

Enumerator
Zip	Packed MITK scene (*.mitk); load via SceneIO::LoadScene.
JsonStandalone	Standalone JSON scene (*.mitkscene.json); load via SceneIO::LoadScene.
UnpackedIndex	Unpacked scene index (*.mitksceneindex); load via SceneIO::LoadSceneUnzipped.

Definition at line 132 of file QmitkSegmentationTaskListWidget.h.

ScreenshotFormat

enum mitk::ScreenshotFormat

strong

Format for screenshot capture.

Enumerator
Png
Jpeg

Definition at line 36 of file mitkRenderWindowBridge.h.

Sex

enum mitk::Sex

strong

Patient sex modeled as a closed set.

Only the two values needed by the SUV normalization strategies are accepted. Conversion from the open DICOM string (CS VR M / F / O / U) happens once at the helper boundary in GetPatientsSex(); downstream code never carries an open string sentinel.

See also

GetPatientsSex

Enumerator
Male
Female
Other	DICOM (0010,0040) value 'O' (Other). Strategies that consume patient sex must define how this case is handled. The Janmahasatian LBM strategy follows the IBSI-SUV benchmark recommendation: the mean of the male- and female-specific scale numerators. DICOM 'U' (Unknown) has no benchmark-supported convention and is rejected at the helper boundary.

Definition at line 46 of file mitkSUVCalculationHelper.h.

SUVPixelSemantics

enum mitk::SUVPixelSemantics

strong

Whether the raw PET pixel values represent activity concentration or a pre-computed SUV.

The two regimes need fundamentally different math:

• ActivityConcentration: the standard SUV formula applies; the pixel may carry an additional pre-multiplier (e.g. a Philips CNTS activity-scale factor) that is folded into the activity pre-multiplication.
• PrenormalizedSUV: the pixel is already in SUV form; the pipeline only re-normalizes from the source variant to the target variant. No decay correction, dose, or half-life are consumed.

Enumerator
ActivityConcentration
PrenormalizedSUV

Definition at line 39 of file mitkSUVInputModel.h.

SUVVariant

enum mitk::SUVVariant

strong

Identifies a Standardized Uptake Value (SUV) variant.

• BW - body-weight-normalized SUV (SUVbw). Output [g/mL].
• LBM_Janmahasatian - lean-body-mass-normalized SUV (SUVlbm) using the Janmahasatian (2005) formula. Output [g/mL]. IBSI-SUV-recommended LBM formula.
• LBM_James128 - lean-body-mass-normalized SUV using the James (1976) "James 128" formula. Output [g/mL].
• IBW - ideal-body-weight-normalized SUV using the Sugawara (1999) formula. Output [g/mL]. Sex-specific.
• BSA - body-surface-area-normalized SUV (SUVbsa) using the DuBois & DuBois (1916) formula. Output [cm^2/mL].

Remarks

LBM_Janmahasatian, LBM_James128 and IBW depend on patient sex. The strategies in this header are sex-closed: they accept Sex::Male and Sex::Female only. Sex::Other is resolved upstream (typically by SUVImageFilter) under DICOMReadPolicy and never reaches the strategy.

Enumerator
BW
LBM_Janmahasatian
LBM_James128
IBW
BSA

Definition at line 67 of file mitkSUVNormalizationStrategy.h.

WaveletType

enum mitk::WaveletType

Specifies the isotropic wavelet function type for wavelet decomposition.

See also

TransformationOperation::WaveletForward

Enumerator
Held	Held isotropic wavelet.
Vow	Vow isotropic wavelet.
Simoncelli	Simoncelli isotropic wavelet.
Shannon	Shannon isotropic wavelet.

Definition at line 38 of file mitkTransformationOperation.h.

WindowKind

enum mitk::WindowKind

strong

Closed set of render window kinds reported by the bridge.

Drives which sub-resources apply (e.g. selected-slice is only valid for TwoD windows). Adding a new value here must also extend WindowKindToString.

Enumerator
TwoD
ThreeD

Definition at line 137 of file mitkRenderWindowBridge.h.

Function Documentation

_CastToItkImage2Access() [1/2]

template<typename TPixel , unsigned int VImageDimension, class ItkOutputImageType >

void mitk::_CastToItkImage2Access	(	const itk::Image< TPixel, VImageDimension > *	itkInputImage,
		itk::SmartPointer< ItkOutputImageType > &	itkOutputImage
	)

_CastToItkImage2Access() [2/2]

template<typename TPixel , unsigned int VImageDimension, class ItkOutputImageType >

void mitk::_CastToItkImage2Access	(	const itk::VectorImage< TPixel, VImageDimension > *	itkInputImage,
		itk::SmartPointer< ItkOutputImageType > &	itkOutputImage
	)

AnatomicalPlaneToV2String()

MITKRESTAPI_EXPORT const char* mitk::AnatomicalPlaneToV2String

(

AnatomicalPlane

plane

)

Returns

Wire/JSON form of an AnatomicalPlane as used in the v2 layout schema (lower-case: "axial" / "sagittal" / "coronal" / "original").

ApplyPreferencesOverrides()

MITKCORE_EXPORT void mitk::ApplyPreferencesOverrides	(	const std::string &	xmlContent,
		IPreferences *	prefs
	)

Apply preference overrides from XML content.

Parses the given XML string (same format as prefs.xml) and applies all properties as session-only overrides to the corresponding preference nodes.

Precondition

prefs must not be nullptr.

xmlContent must be valid XML in the prefs.xml format.

Exceptions

mitk::Exception

if prefs is nullptr or the XML is malformed.

See also

IPreferences::Override()

ApplyPreferencesPatches()

MITKCORE_EXPORT void mitk::ApplyPreferencesPatches	(	const std::string &	xmlContent,
		IPreferences *	prefs
	)

Permanently patch preferences from an XML string.

Parses the given XML string (same format as prefs.xml) and writes each property via IPreferences::Put(). Missing preference nodes are created on demand. The caller is responsible for calling Flush() after all patches have been applied.

Precondition

prefs must not be nullptr.

xmlContent must be valid XML in the prefs.xml format.

Exceptions

mitk::Exception

if prefs is nullptr or the XML is malformed.

See also

IPreferences::Put()

CalcAvgPoint()

mitk::Point3D mitk::CalcAvgPoint	(	mitk::Point3D	a,
		mitk::Point3D	b
	)

helper function for calculating the average of two points

CEST_PROPERTY_NAME_B1Amplitude()

const std::string MITKCEST_EXPORT mitk::CEST_PROPERTY_NAME_B1Amplitude

(

)

Return the property name for the CEST B1 amplitude ("CEST.B1Amplitude").

Returns

The property name string "CEST.B1Amplitude".

See also

GetCESTB1Amplitude

CEST_PROPERTY_NAME_DutyCycle()

const std::string MITKCEST_EXPORT mitk::CEST_PROPERTY_NAME_DutyCycle

(

)

Return the property name for the CEST duty cycle ("CEST.DutyCycle").

The duty cycle is stored as a percentage value in the property (e.g., 56 for 56%).

Returns

The property name string "CEST.DutyCycle".

See also

GetCESTDutyCycle

CEST_PROPERTY_NAME_FREQ()

const std::string MITKCEST_EXPORT mitk::CEST_PROPERTY_NAME_FREQ

(

)

Return the property name for the CEST frequency ("CEST.FREQ").

The frequency is stored in Hz in the property.

Returns

The property name string "CEST.FREQ".

See also

GetCESTFrequency, SetCESTFrequencyMHz

CEST_PROPERTY_NAME_OFFSETS()

const std::string MITKCEST_EXPORT mitk::CEST_PROPERTY_NAME_OFFSETS

(

)

Return the property name for the CEST frequency offsets ("CEST.Offsets").

The offsets property stores space-separated frequency offset values in ppm. Offsets with absolute value > 299 indicate M0 normalization images.

Returns

The property name string "CEST.Offsets".

See also

ExtractCESTOffset, CESTImageNormalizationFilter

CEST_PROPERTY_NAME_PREPERATIONTYPE()

const std::string MITKCEST_EXPORT mitk::CEST_PROPERTY_NAME_PREPERATIONTYPE

(

)

Return the property name for the CEST preparation type ("CEST.PreparationType").

Returns

The property name string "CEST.PreparationType".

CEST_PROPERTY_NAME_PULSEDURATION()

const std::string MITKCEST_EXPORT mitk::CEST_PROPERTY_NAME_PULSEDURATION

(

)

Return the property name for the CEST pulse duration ("CEST.PulseDuration").

The pulse duration is stored in microseconds in the property.

Returns

The property name string "CEST.PulseDuration".

See also

GetCESTPulseDuration

CEST_PROPERTY_NAME_RECOVERYMODE()

const std::string MITKCEST_EXPORT mitk::CEST_PROPERTY_NAME_RECOVERYMODE

(

)

Return the property name for the CEST recovery mode ("CEST.RecoveryMode").

Returns

The property name string "CEST.RecoveryMode".

CEST_PROPERTY_NAME_SPOILINGTYPE()

const std::string MITKCEST_EXPORT mitk::CEST_PROPERTY_NAME_SPOILINGTYPE

(

)

Return the property name for the CEST spoiling type ("CEST.SpoilingType").

Returns

The property name string "CEST.SpoilingType".

CEST_PROPERTY_NAME_TREC()

const std::string MITKCEST_EXPORT mitk::CEST_PROPERTY_NAME_TREC

(

)

Return the property name for the CEST T1 recovery times ("CEST.TREC").

The TREC property stores space-separated T1 recovery time values in milliseconds.

Returns

The property name string "CEST.TREC".

See also

ExtractCESTT1Time

CheckForLabelValueConflictsAndResolve()

MITKMULTILABEL_EXPORT bool mitk::CheckForLabelValueConflictsAndResolve	(	const mitk::MultiLabelSegmentation::LabelValueVectorType &	newValues,
		mitk::MultiLabelSegmentation::LabelValueVectorType &	usedLabelValues,
		mitk::MultiLabelSegmentation::LabelValueVectorType &	correctedLabelValues
	)

CheckUID() [1/2]

bool MITKMATCHPOINTREGISTRATION_EXPORT mitk::CheckUID	(	const mitk::BaseData *	data,
		const NodeUIDType &	uid
	)

Checks whether the UID property of the given BaseData matches the specified UID.

Parameters

[in]	data	Pointer to the BaseData to check.
[in]	uid	The UID string to compare against.

Returns

True if the data's "data.UID" property equals uid, false otherwise (including when the data is nullptr or the property does not exist).

See also

EnsureUID(mitk::BaseData*)

CheckUID() [2/2]

bool MITKMATCHPOINTREGISTRATION_EXPORT mitk::CheckUID	(	const mitk::DataNode *	node,
		const NodeUIDType &	uid
	)

Checks whether the UID property of the given DataNode matches the specified UID.

Parameters

[in]	node	Pointer to the DataNode to check.
[in]	uid	The UID string to compare against.

Returns

True if the node's "matchpoint.UID" property equals uid, false otherwise (including when the node is nullptr or the property does not exist).

See also

EnsureUID(mitk::DataNode*)

CheckXMinMaxFromPlotDataValues()

void mitk::CheckXMinMaxFromPlotDataValues	(	const PlotDataValues &	data,
		double &	min,
		double &	max
	)

Helper function that actualizes min and max by the x values given in data.

CheckYMinMaxFromPlotDataValues()

void mitk::CheckYMinMaxFromPlotDataValues	(	const PlotDataValues &	data,
		double &	min,
		double &	max
	)

Helper function that actualizes min and max by the y values given in data.

ClassifyPETInput()

SUVInputModel MITKPET_EXPORT mitk::ClassifyPETInput	(	const IPropertyProvider *	provider,
		DICOMReadPolicy	policy
	)

Classify the input pixel semantics from DICOM properties.

Reads (0054,1001) Units, (0054,1006) SUV Type, (0008,0070) Manufacturer, and (for Philips CNTS inputs) the lifted Philips private scale factors (mitk.pet.PhilipsSUVScale, mitk.pet.PhilipsActivityScale) to decide which arm of the SUV pipeline applies and, for pre-normalized inputs, what variant the stored pixels represent.

Parameters

[in]	provider	Source of DICOM properties; typically the filter's input image.
[in]	policy	Currently informational. The classification matrix is identical for both policies; the parameter exists so future IBSI-SUV adaptations on the input-units axis can hook in without an API break.

Returns

The classification result.

Precondition

provider is not null.

Exceptions

MissingDICOMPropertyException	if (0054,1001) Units is absent.
UnsupportedPETUnitsException	if (0054,1001) holds an unrecognized value, or if the value is CNTS and the manufacturer is not Philips.
MissingPhilipsPETScaleException	if (0054,1001) is CNTS, manufacturer is Philips, but neither of the two Philips private scale factors is present.

ClassifyTaskListSceneFile()

MITKSEGMENTATIONUI_EXPORT SceneFileForm mitk::ClassifyTaskListSceneFile

(

const std::filesystem::path &

scenePath

)

Classify a Segmentation Task List Scene.Path by its accepted file form.

Accepts three forms: *.mitk (ZIP) and *.mitksceneindex (matched on the last extension, case-sensitive, preserving legacy behavior), and *.mitkscene.json (matched on the full filename suffix, case-insensitively). Note that std::filesystem::path::extension() returns only ".json" for "foo.mitkscene.json", which is why the JSON form is matched on the full filename rather than the extension.

Parameters

scenePath

Path to the scene file referenced by the task.

Returns

The classified scene file form.

Exceptions

mitk::Exception

if the path matches none of the accepted forms. The message lists all three accepted forms and the offending path.

ComputeCenterOfMaximumArea()

MITKIMAGESTATISTICS_EXPORT IntensityProfile::InstanceIdentifier mitk::ComputeCenterOfMaximumArea	(	IntensityProfile::ConstPointer	intensityProfile,
		IntensityProfile::InstanceIdentifier	radius
	)

Compute center of maximum area under the curve of an intensity profile.

Parameters

[in]	intensityProfile	An intensity profile.
[in]	radius	Radius of the area (width of area equals 1 + 2 * radius).

Returns

Index of the maximum area center.

ComputeGlobalMaximum()

MITKIMAGESTATISTICS_EXPORT IntensityProfile::InstanceIdentifier mitk::ComputeGlobalMaximum	(	IntensityProfile::ConstPointer	intensityProfile,
		IntensityProfile::MeasurementType &	max
	)

Compute global maximum of an intensity profile.

Parameters

[in]	intensityProfile	An intensity profile.
[out]	max	The global maximum.

Returns

Index of the global maximum.

ComputeGlobalMinimum()

MITKIMAGESTATISTICS_EXPORT IntensityProfile::InstanceIdentifier mitk::ComputeGlobalMinimum	(	IntensityProfile::ConstPointer	intensityProfile,
		IntensityProfile::MeasurementType &	min
	)

Compute global minimum of an intensity profile.

Parameters

[in]	intensityProfile	An intensity profile.
[out]	min	The global minimum.

Returns

Index of the global minimum.

ComputeIntensityProfile() [1/3]

MITKIMAGESTATISTICS_EXPORT IntensityProfile::Pointer mitk::ComputeIntensityProfile	(	Image::Pointer	image,
		const Point3D &	startPoint,
		const Point3D &	endPoint,
		unsigned int	numSamples,
		InterpolateImageFunction::Enum	interpolator = InterpolateImageFunction::NearestNeighbor
	)

Compute intensity profile of an image for each sample between two points.

Parameters

[in]	image	A three-dimensional image which consists of single component pixels.
[in]	startPoint	A point at which the first sample is to be read.
[in]	endPoint	A point at which the last sample is to be read.
[in]	numSamples	Number of samples between startPoint and endPoint (must be at least 2).
[in]	interpolator	Image interpolation function which is used to read each sample.

Exceptions

if	image is 4D

Returns

The computed intensity profile.

ComputeIntensityProfile() [2/3]

MITKIMAGESTATISTICS_EXPORT IntensityProfile::Pointer mitk::ComputeIntensityProfile	(	Image::Pointer	image,
		PlanarFigure::Pointer	planarFigure
	)

Compute intensity profile of an image for each pixel along the first PolyLine of a given planar figure.

Parameters

[in]	image	A two or three-dimensional image which consists of single component pixels.
[in]	planarFigure	A planar figure from which the first PolyLine is used to evaluate the intensity profile.

Returns

The computed intensity profile.

ComputeIntensityProfile() [3/3]

MITKIMAGESTATISTICS_EXPORT IntensityProfile::Pointer mitk::ComputeIntensityProfile	(	Image::Pointer	image,
		PlanarLine::Pointer	planarLine,
		unsigned int	numSamples,
		InterpolateImageFunction::Enum	interpolator = InterpolateImageFunction::NearestNeighbor
	)

Compute intensity profile of an image for each sample along a planar line.

Parameters

[in]	image	A three-dimensional image which consists of single component pixels.
[in]	planarLine	A planar line along which the intensity profile will be evaluated.
[in]	numSamples	Number of samples along the planar line (must be at least 2).
[in]	interpolator	Image interpolation function which is used to read each sample.

Exceptions

if	image is 4D

Returns

The computed intensity profile.

ComputeIntensityProfileStatistics()

MITKIMAGESTATISTICS_EXPORT void mitk::ComputeIntensityProfileStatistics	(	IntensityProfile::ConstPointer	intensityProfile,
		ImageStatisticsContainer::ImageStatisticsObject &	stats
	)

Compute statistics of an intensity profile.

Parameters

[in]	intensityProfile	An intensity profile.
[in]	stats	An ImageStatisticsCalculator::Statistics object to hold the calculated statistics.

ComputeMiliSecDuration()

MITKDICOM_EXPORT double mitk::ComputeMiliSecDuration	(	const OFDateTime &	start,
		const OFDateTime &	stop
	)

Compute the duration from start to stop in milliseconds.

Returned as a double so callers can capture the fractional part below the integer-millisecond boundary. For DCMTK's ms-granular OFDateTime input this is bit-equivalent to the previous Boost.DateTime implementation.

computeSUVbw()

double MITKPET_EXPORT mitk::computeSUVbw	(	double	value,
		double	injectedActivity,
		double	bodyweight,
		double	decayTime,
		double	halfLife
	)

Compute the body-weight-normalized SUV (SUVbw) for a single value.

Multiplies the given raw PET pixel value by the SUVbw scale factor to produce the body-weight-normalized Standardized Uptake Value.

Parameters

[in]	value	Raw PET pixel value to be converted (typically in [Bq/ml]).
[in]	injectedActivity	Activity injected in [Bq].
[in]	bodyweight	Weight of the subject in [kg].
[in]	decayTime	Time between injection and measurement in [s].
[in]	halfLife	Half-life of the used radionuclide in [s].

Returns

The computed SUVbw value [g/ml].

See also

computeSUVbwScaleFactor

computeSUVbwScaleFactor()

double MITKPET_EXPORT mitk::computeSUVbwScaleFactor	(	double	injectedActivity,
		double	bodyweight,
		double	decayTime,
		double	halfLife
	)

Compute the SUV body weight (SUVbw) scale factor.

Backward-compatible wrapper around computeSUVScaleFactor() that encodes the SUVbw normalization (bodyweight * 1000 expressed in grams).

factor = (bodyweight * 1000) / (injectedActivity * 2^(-decayTime / halfLife))

Parameters

[in]	injectedActivity	Activity injected in [Bq].
[in]	bodyweight	Weight of the subject in [kg].
[in]	decayTime	Time between injection and measurement in [s].
[in]	halfLife	Half-life of the used radionuclide in [s].

Returns

The SUVbw scale factor (output [g/Bq]; applied to a [Bq/mL] image yields [g/mL]).

See also

computeSUVbw, HALFLIFECONSTANTS

computeSUVScaleFactor()

double MITKPET_EXPORT mitk::computeSUVScaleFactor	(	double	injectedActivity,
		double	scaleNumerator,
		double	decayTime,
		double	halfLife
	)

Compute the generic SUV scale factor.

Calculates the multiplicative scale factor used to convert raw PET pixel values to a Standardized Uptake Value (SUV). The formula accounts for radioactive decay between injection and measurement time:

factor = scaleNumerator / (injectedActivity * 2^(-decayTime / halfLife))

The SUV variant (SUVbw, SUVlbm, SUVbsa, ...) is encoded in the scaleNumerator: callers obtain the variant-specific value (and its units) from a SUVNormalizationStrategy. The math kernel itself is variant-agnostic.

Parameters

[in]	injectedActivity	Activity injected in [Bq].
[in]	scaleNumerator	Variant-specific normalization quantity whose units determine the SUV output units (e.g. body weight in [g] for SUVbw / SUVlbm, body surface area in [cm^2] for SUVbsa).
[in]	decayTime	Time between injection and measurement in [s].
[in]	halfLife	Half-life of the used radionuclide in [s].

Returns

The SUV scale factor.

See also

computeSUVbwScaleFactor, SUVFunctorPolicy, SUVNormalizationStrategy

ConditionalOutputOfDifference()

template<typename ElementToOutput1 , typename ElementToOutput2 >

void mitk::ConditionalOutputOfDifference ( ElementToOutput1  elem1, ElementToOutput2  elem2, mitk::ScalarType  eps, bool  verbose, bool  isEqual  )

inline

Conditionally output the difference between two elements to the log.

Outputs elem1, elem2, and eps when verbose is true and the elements are not equal. Elements can e.g. be a mitk::Vector or a mitk::Point.

Parameters

[in]	elem1	First element to be output.
[in]	elem2	Second element to be output.
[in]	eps	The epsilon which their difference was bigger than.
[in]	verbose	Whether output should be generated.
[in]	isEqual	Only output something if the two elements are not equal.

Definition at line 50 of file mitkEqual.h.

References eps, and MITK_INFO.

Referenced by Equal(), and EqualArray().

ConfigureNodeAsDoseNode()

void MITKRT_EXPORT mitk::ConfigureNodeAsDoseNode	(	mitk::DataNode *	doseNode,
		const mitk::IsoDoseLevelSet *	colorPreset,
		mitk::DoseValueAbs	referenceDose,
		bool	showColorWashGlobal = true
	)

Configures a DataNode so it is correctly visualized as a dose distribution with color wash.

Sets all necessary properties on the given node for dose visualization including the iso dose level set, reference dose, color wash visibility, rendering mode, transfer function, and opacity.

Parameters

[in,out]	doseNode	The DataNode containing the dose image to configure. If nullptr, the function returns immediately.
[in]	colorPreset	The iso dose level set defining the color coding for visualization.
[in]	referenceDose	The absolute reference dose (in Gy) used to scale relative iso dose levels.
[in]	showColorWashGlobal	If true, a color transfer function is generated and applied; otherwise, lookup-table level-window mode is used.

Precondition

The DataNode must contain a valid mitk::Image as its data.

See also

ConfigureNodeAsIsoLineNode

mitk::IsoDoseLevelSet

mitk::DoseImageVtkMapper2D

ConfigureNodeAsIsoLineNode()

void MITKRT_EXPORT mitk::ConfigureNodeAsIsoLineNode	(	mitk::DataNode *	doseOutlineNode,
		const mitk::IsoDoseLevelSet *	colorPreset,
		mitk::DoseValueAbs	referenceDose,
		bool	showIsolinesGlobal = true
	)

Configures a DataNode so it is correctly visualized as dose iso line contours.

Sets all necessary properties on the given node for iso line rendering including the iso dose level set, free iso values, reference dose, iso line visibility, outline rendering, and assigns a DoseImageVtkMapper2D for contour drawing.

Parameters

[in,out]	doseOutlineNode	The DataNode containing the dose image for iso line rendering. If nullptr, no action is taken.
[in]	colorPreset	The iso dose level set defining the colors and visibility of each iso line.
[in]	referenceDose	The absolute reference dose (in Gy) used to scale relative iso dose levels.
[in]	showIsolinesGlobal	If true, iso line rendering is globally enabled on the node.

Precondition

The DataNode must contain a valid mitk::Image as its data.

See also

ConfigureNodeAsDoseNode

mitk::DoseImageVtkMapper2D

convertArrayToParameter()

MITKPHARMACOKINETICS_EXPORT ModelBase::StaticParameterValuesType mitk::convertArrayToParameter

(

itk::Array< double >

array

)

Converts an itk::Array<double> into a StaticParameterValuesType (std::vector<double>).

Iterates through the array elements and pushes each value into the resulting vector.

Parameters

[in]

array

The source itk::Array to convert.

Returns

A std::vector containing the same values as the input array.

See also

convertParameterToArray

Referenced by mitk::AIFBasedModelParameterizerBase< TAIFBasedModel >::GetGlobalStaticParameters().

ConvertCompositePixelValueToString()

std::string MITKCORE_EXPORT mitk::ConvertCompositePixelValueToString	(	Image::Pointer	image,
		itk::Index< 3 >	index
	)

Convert composite pixel values (RGB, RGBA) to a displayable string.

Parameters

[in]	image	The image containing composite pixel data.
[in]	index	The 3D index of the pixel to convert.

Returns

A string representation of the pixel value, or "Out of bounds" if the index is outside the image.

Exceptions

mitk::Exception	If the image is nullptr.
mitk::AccessByItkException	For pixel types which are not part of MITK_ACCESSBYITK_COMPOSITE_PIXEL_TYPES_SEQ.

ConvertContourModelSetToLabelMask()

MITKSEGMENTATION_EXPORT Image::Pointer mitk::ConvertContourModelSetToLabelMask	(	const mitk::Image *	refImage,
		mitk::ContourModelSet *	contourSet
	)

Converts a contour model set into a binary label mask image.

Parameters

[in]	refImage	Image that serves as geometry template for the output.
[in]	contourSet	The contour set to convert.

Returns

A binary image suitable for use as label content in a segmentation.

ConvertContourModelToLabelMask()

MITKSEGMENTATION_EXPORT Image::Pointer mitk::ConvertContourModelToLabelMask	(	const mitk::Image *	refImage,
		mitk::ContourModel *	contourModel
	)

Converts a contour model into a binary label mask image.

Parameters

[in]	refImage	Image that serves as geometry template for the output.
[in]	contourModel	The contour model to convert.

Returns

A binary image suitable for use as label content in a segmentation.

ConvertDICOMStrToValue()

template<typename TNumericReturnType >

TNumericReturnType mitk::ConvertDICOMStrToValue

(

const std::string &

dcmValueString

)

Convert a DICOM property string to a numeric value.

Helper function that converts the content of a DICOM property string into the given return type. The function makes the following assumptions:

1. dcmValueString encodes exactly one number.
2. The value is encoded compliant to locale "C".

Template Parameters

TNumericReturnType

The numeric type to convert to (e.g. double, int).

Parameters

[in]

dcmValueString

The DICOM value string to convert.

Returns

The converted numeric value.

Exceptions

mitk::Exception

if dcmValueString cannot be converted to the return type.

Precondition

dcmValueString must be convertible into the return type.

Definition at line 102 of file mitkDICOMProperty.h.

References mitkThrow.

ConvertImageToGroupImage()

MITKMULTILABEL_EXPORT Image::Pointer mitk::ConvertImageToGroupImage	(	const Image *	inputImage,
		mitk::MultiLabelSegmentation::LabelValueVectorType &	foundLabels
	)

ConvertImageToLabelSetImage()

MITKMULTILABEL_EXPORT MultiLabelSegmentation::Pointer mitk::ConvertImageToLabelSetImage

(

Image::Pointer

image

)

Convert mitk::Image to mitk::MultiLabelSegmentation, templating and differentation between itk::Image and itk::VectorImage is internal.

ConvertImageVectorToLabelSetImage()

MITKMULTILABEL_EXPORT MultiLabelSegmentation::Pointer mitk::ConvertImageVectorToLabelSetImage	(	const std::vector< mitk::Image::Pointer > &	images,
		const TimeGeometry *	timeGeometry
	)

ConvertItkTransform()

template<class TTransformType1 , class TTransformType2 >

void mitk::ConvertItkTransform	(	const TTransformType1 *	sourceTransform,
		TTransformType2 *	destTransform
	)

Convert between two ITK transform types by copying matrix and offset.

Template Parameters

TTransformType1	The source ITK transform type.
TTransformType2	The destination ITK transform type.

Parameters

sourceTransform	The source transform. If nullptr, the function returns immediately.
destTransform	The destination transform. If nullptr, the function returns immediately.

See also

TransferVtkMatrixToItkTransform

TransferItkTransformToVtkMatrix

Definition at line 100 of file mitkMatrixConvert.h.

ConvertLabelSetImageToImage()

MITKMULTILABEL_EXPORT Image::Pointer mitk::ConvertLabelSetImageToImage

(

MultiLabelSegmentation::ConstPointer

labelSetImage

)

Convert mitk::MultiLabelSegmentation to mitk::Image (itk::VectorImage)

ConvertMetaDataObjectToTimePointList()

MITKCORE_EXPORT std::vector<TimePointType> mitk::ConvertMetaDataObjectToTimePointList

(

const itk::MetaDataObjectBase *

data

)

Helper function that converts the content of a meta data into a time point vector. If MetaData is not valid or cannot be converted an empty vector is returned.

ConvertOFDateTimeToTimePoint()

MITKDICOM_EXPORT std::chrono::sys_time<std::chrono::milliseconds> mitk::ConvertOFDateTimeToTimePoint

(

const OFDateTime &

time

)

Convert a DCMTK OFDateTime to a std::chrono time_point.

The returned time_point has millisecond precision, matching DCMTK's native granularity for OFTime. No range clamping or year adjustment is performed; any year accepted by std::chrono::year is forwarded as-is.

ConvertParameterMapToParameterVector()

MITKMODELFIT_EXPORT ModelTraitsInterface::ParametersType mitk::ConvertParameterMapToParameterVector	(	const ParameterValueMapType &	valueMap,
		const ModelTraitsInterface *	pTraitInterface
	)

Helper function that converts a parameter value map (like returned by ExtractParameterValueMapFromModelFit() into the ParametersType. The ordering will be deduced with the help of the passed trait interface.

Precondition

pTraitInterface must point to a valid instance.

valueMap must contain all parameter names of pTraitsInterface.

convertParameterToArray()

MITKPHARMACOKINETICS_EXPORT itk::Array<double> mitk::convertParameterToArray

(

ModelBase::StaticParameterValuesType

parameter

)

Converts a StaticParameterValuesType (std::vector<double>) into an itk::Array<double>.

Creates an itk::Array of the same size as the input vector and copies each element.

Parameters

[in]

parameter

The source std::vector to convert.

Returns

An itk::Array containing the same values as the input vector.

See also

convertArrayToParameter

Referenced by mitk::ConcreteAIFBasedModelFactory< TModelParameterizer >::DoCreateParameterizer().

ConvertPropertyFromSelfContainedJson()

MITKCORE_EXPORT BaseProperty::Pointer mitk::ConvertPropertyFromSelfContainedJson

(

const nlohmann::json &

json

)

Deserialize a property from self contained JSON representation.

This is a helper methods that converts the property from a self contained json (so nothing more is needed to serialize or deserialize w/o any loss. Handles both simple JSON values (string, int, float, bool) and complex property objects with "type" and "value" fields.

For simple values, the type is inferred from the JSON type:

• JSON string -> StringProperty
• JSON integer -> IntProperty
• JSON float -> FloatProperty
• JSON boolean -> BoolProperty

For complex types, uses IPropertyDeserialization service to create instances.

JSON format:

• Simple types (string, int, float, bool) serialize directly as their JSON value
• Complex types use: {"type": "ClassName", "value": {...}}

Parameters

json	The JSON value to deserialize.

Returns

Created property.

Exceptions

mitk::Exception

if JSON type is unsupported or deserialization fails.

ConvertPropertyListFromSelfContainedJson()

MITKCORE_EXPORT PropertyList::Pointer mitk::ConvertPropertyListFromSelfContainedJson

(

const nlohmann::json &

json

)

Deserialize a property list from self contained JSON representations.

This is a helper methods that converts the property list from self contained json representations (see ConvertPropertyFromSelfContainedJson() for more details).

Parameters

json	Source JSON object containing properties.

Returns

New PropertyList containing the deserialized properties.

Exceptions

mitk::Exception

if JSON is not an object or a property fails to deserialize.

ConvertPropertyListToSelfContainedJson()

MITKCORE_EXPORT nlohmann::json mitk::ConvertPropertyListToSelfContainedJson

(

const mitk::PropertyList *

propertyList

)

Serialize all properties from a PropertyList to self contained JSON representations.

This is a helper methods that converts the property list to self contained json representations (see ConvertPropertyToSelfContainedJson() for more details).

Parameters

propertyList

The list to serialize. Must not be nullptr.

Returns

JSON object with property names as keys.

Exceptions

mitk::Exception

if propertyList is nullptr or a property fails to serialize.

ConvertPropertyToSelfContainedJson()

MITKCORE_EXPORT nlohmann::json mitk::ConvertPropertyToSelfContainedJson

(

const BaseProperty *

property

)

Serialize a property to self contained JSON.

This is a helper methods that converts the property in a self contained json (so nothing more is needed to serialize or deserialize w/o any loss. Simple property types (StringProperty, IntProperty, FloatProperty, BoolProperty) are serialized directly as their JSON primitive values. Complex types are serialized as objects with "type" and "value" fields.

JSON format:

• Simple types (string, int, float, bool) serialize directly as their JSON value
• Complex types use: {"type": "ClassName", "value": {...}}

Parameters

property

The property to serialize. Must not be nullptr.

Returns

JSON representation of the property.

Exceptions

mitk::Exception

if property is nullptr or does not support JSON serialization.

ConvertSurfaceToLabelMask()

MITKCORE_EXPORT mitk::Image::Pointer mitk::ConvertSurfaceToLabelMask	(	const mitk::Image *	refImage,
		const mitk::Surface *	surface
	)

Convert a surface into a binary mask image suitable for use as segmentation label content.

Parameters

[in]	refImage	pointer to an image that serves as template for the output geometry.
[in]	surface	pointer to the surface to be converted into a binary mask.

Returns

The generated binary mask image, or nullptr on failure.

Exceptions

mitk::Exception

if refImage or surface is nullptr.

ConvertTimePointListToMetaDataObject()

MITKCORE_EXPORT itk::MetaDataObjectBase::Pointer mitk::ConvertTimePointListToMetaDataObject

(

const mitk::TimeGeometry *

timeGeometry

)

Helper function that converts the time points of a passed time geometry to a time point list and stores it in a itk::MetaDataObject. Use ConvertMetaDataObjectToTimePointList() to convert it back to a time point list.

ConvertToDICOMDatasetAccessingImageFrameList()

MITKDICOM_EXPORT mitk::DICOMDatasetAccessingImageFrameList mitk::ConvertToDICOMDatasetAccessingImageFrameList

(

const DICOMDatasetList &

input

)

Convert a raw DICOMDatasetList to a list of DICOMDatasetAccessingImageFrameInfo smart pointers.

Parameters

[in]

input

The raw pointer list to convert (elements must be DICOMDatasetAccessingImageFrameInfo instances).

Returns

A vector of DICOMDatasetAccessingImageFrameInfo smart pointers.

ConvertToDICOMDatasetList()

MITKDICOM_EXPORT mitk::DICOMDatasetList mitk::ConvertToDICOMDatasetList

(

const DICOMDatasetAccessingImageFrameList &

input

)

Convert a list of DICOMDatasetAccessingImageFrameInfo to a raw pointer list of DICOMDatasetAccess.

Parameters

[in]

input

The list to convert.

Returns

A vector of raw DICOMDatasetAccess pointers.

ConvertToDICOMImageFrameList()

MITKDICOM_EXPORT mitk::DICOMImageFrameList mitk::ConvertToDICOMImageFrameList

(

const DICOMDatasetAccessingImageFrameList &

input

)

Convert a list of DICOMDatasetAccessingImageFrameInfo to a list of DICOMImageFrameInfo.

Parameters

[in]

input

The list to convert.

Returns

A vector of DICOMImageFrameInfo smart pointers.

ConvertValueToDICOMStr()

template<typename TNumericType >

std::string mitk::ConvertValueToDICOMStr

(

const TNumericType

value

)

Convert a numeric value to a DICOM property string.

Helper function that converts a numeric value into a string representation suitable for storing in a DICOM property, using locale "C".

Template Parameters

TNumericType

The numeric type to convert from (e.g. double, int).

Parameters

[in]

value

The numeric value to convert.

Returns

The string representation of the value.

Exceptions

mitk::Exception

if the value cannot be converted to a string.

Precondition

value must be convertible to a string.

Definition at line 128 of file mitkDICOMProperty.h.

References mitkThrow.

convoluteAIFWithConstant()

itk::Array<double> mitk::convoluteAIFWithConstant ( mitk::ModelBase::TimeGridType  timeGrid, mitk::AIFBasedModelBase::AterialInputFunctionType  aif, double  constant  )

inline

Convolves the AIF with a constant value using an iterative formula.

Computes the cumulative integral of the AIF multiplied by a constant factor using linear interpolation between time grid points. This is used by irreversible compartment models (e.g. FDG model).

Parameters

[in]	timeGrid	The time grid in seconds.
[in]	aif	The arterial input function values.
[in]	constant	The constant factor to multiply.

Returns

Array containing the convolution result at each time grid point.

Definition at line 161 of file mitkConvolutionHelper.h.

convoluteAIFWithExponential()

itk::Array<double> mitk::convoluteAIFWithExponential ( mitk::ModelBase::TimeGridType  timeGrid, mitk::AIFBasedModelBase::AterialInputFunctionType  aif, double  lambda  )

inline

Convolves the AIF with an exponential residue function using an iterative formula.

Computes the convolution of the arterial input function aif(t) with the exponential residue function R(t) = exp(-lambda * t) using linear interpolation between time grid points. This is used by compartment models to compute tissue concentration curves.

Parameters

[in]	timeGrid	The time grid in seconds.
[in]	aif	The arterial input function values.
[in]	lambda	The exponential decay rate constant.

Returns

Array containing the convolution result at each time grid point.

Definition at line 129 of file mitkConvolutionHelper.h.

CountDistinctForegroundValues()

MITKMULTILABEL_EXPORT unsigned int mitk::CountDistinctForegroundValues	(	const Image *	image,
		unsigned int	limit
	)

Counts distinct foreground (non-zero) pixel values, stopping early once limit is reached.

Each distinct foreground value becomes a label when the image is converted to a MultiLabelSegmentation (see ConvertImageToGroupImage and MultiLabelSegmentation::InitializeByLabeledImage). Counting with an early exit makes this a cheap plausibility check before the potentially very expensive conversion.

Parameters

image	image to inspect; only 3D and 4D images are counted (the dimensions the conversion supports), all others return 0.
limit	count at which to stop; the result is capped at limit, so a return value equal to limit means "at least \p limit".

Returns

number of distinct foreground values found, capped at limit.

CreateAnyCESTImageNodePredicate()

MITKCEST_EXPORT NodePredicateBase::Pointer mitk::CreateAnyCESTImageNodePredicate

(

)

Create a node predicate that matches any CEST image node.

Creates a NodePredicateFunction that checks whether a DataNode contains an image that satisfies IsAnyCESTImage().

Returns

A NodePredicateBase smart pointer for use in DataStorage queries.

See also

IsAnyCESTImage, CreateCESTorWasabiImageNodePredicate, CreateCESTT1ImageNodePredicate

CreateCESTorWasabiImageNodePredicate()

MITKCEST_EXPORT NodePredicateBase::Pointer mitk::CreateCESTorWasabiImageNodePredicate

(

)

Create a node predicate that matches CEST or WASABI image nodes.

Creates a NodePredicateFunction that checks whether a DataNode contains an image that satisfies IsCESTorWasabiImage().

Returns

A NodePredicateBase smart pointer for use in DataStorage queries.

See also

IsCESTorWasabiImage, CreateAnyCESTImageNodePredicate, CreateCESTT1ImageNodePredicate

CreateCESTT1ImageNodePredicate()

MITKCEST_EXPORT NodePredicateBase::Pointer mitk::CreateCESTT1ImageNodePredicate

(

)

Create a node predicate that matches CEST T1 image nodes.

Creates a NodePredicateFunction that checks whether a DataNode contains an image that satisfies IsCESTT1Image().

Returns

A NodePredicateBase smart pointer for use in DataStorage queries.

See also

IsCESTT1Image, CreateAnyCESTImageNodePredicate, CreateCESTorWasabiImageNodePredicate

CreateFeatureID()

MITKCLCORE_EXPORT FeatureID mitk::CreateFeatureID	(	FeatureID	templateID,
		std::string	name
	)

Create a FeatureID by cloning a template and setting its name.

Parameters

[in]	templateID	Reference FeatureID to clone.
[in]	name	Name to assign to the new FeatureID.

Returns

A new FeatureID with the given name and all other fields from templateID.

CreateFilteredGroupImage()

MITKMULTILABEL_EXPORT Image::Pointer mitk::CreateFilteredGroupImage	(	const MultiLabelSegmentation *	segmentation,
		MultiLabelSegmentation::GroupIndexType	groupID,
		const MultiLabelSegmentation::LabelValueVectorType &	selectedLabels
	)

Function creates the group image of a segmentation that only contains the selected labels.

Parameters

[in]	segmentation	Pointer to the segmentation that is the source for the map.
[in]	groupID	The group that should be used.
[in]	selectedLabels	White list of label values to include. Invalid values are ignored.

Returns

Group image clone that only contains the selected values.

Precondition

segmentation must point to a valid instance.

groupID must exist in segmentation.

CreateImageStatisticsNode()

MITKIMAGESTATISTICS_EXPORT DataNode::Pointer mitk::CreateImageStatisticsNode	(	ImageStatisticsContainer::Pointer	statistic,
		const std::string &	name = "statistics"
	)

Create a DataNode wrapping an ImageStatisticsContainer.

This helper function creates a new DataNode and sets the given ImageStatisticsContainer as its data. The node is configured as a helper object (not directly visible in renderers).

Parameters

[in]	statistic	Pointer to the ImageStatisticsContainer to wrap.
[in]	name	Name for the DataNode. Defaults to "statistics".

Returns

Pointer to the newly created DataNode.

See also

ImageStatisticsContainer

ImageStatisticsContainerManager

CreateIntensityProfileFromVector()

MITKIMAGESTATISTICS_EXPORT IntensityProfile::Pointer mitk::CreateIntensityProfileFromVector

(

const std::vector< IntensityProfile::MeasurementType > &

vector

)

Convert a standard library vector to an intensity profile.

Parameters

[in]

vector

An standard library vector which contains intensity profile measurements.

Returns

An intensity profile.

CreateLabelClassMap() [1/2]

MITKMULTILABEL_EXPORT std::pair<Image::Pointer, IDToLabelClassNameMapType> mitk::CreateLabelClassMap	(	const MultiLabelSegmentation *	segmentation,
		MultiLabelSegmentation::GroupIndexType	groupID
	)

Create a map of all label classes in a specified group.

This is an overloaded member function, provided for convenience. It differs from the above function only in what argument(s) it accepts. This version always uses all labels of the group.

Parameters

[in]	segmentation	Pointer to the segmentation that is the source for the map.
[in]	groupID	The group that should be used.

Returns

A pair: first is the map image, second is the lookup table mapping pixel values to class names.

Precondition

segmentation must point to a valid instance.

groupID must exist in segmentation.

CreateLabelClassMap() [2/2]

MITKMULTILABEL_EXPORT std::pair<Image::Pointer, IDToLabelClassNameMapType> mitk::CreateLabelClassMap	(	const MultiLabelSegmentation *	segmentation,
		MultiLabelSegmentation::GroupIndexType	groupID,
		const MultiLabelSegmentation::LabelValueVectorType &	selectedLabels
	)

Create a map of all label classes in a specified group.

Parameters

[in]	segmentation	Pointer to the segmentation that is the source for the map.
[in]	groupID	The group that should be used.
[in]	selectedLabels	White list of label values to include. Invalid values are ignored.

Returns

A pair: first is the map image, second is the lookup table mapping pixel values to class names.

Precondition

segmentation must point to a valid instance.

groupID must exist in segmentation.

CreateLabelMask()

MITKMULTILABEL_EXPORT Image::Pointer mitk::CreateLabelMask	(	const MultiLabelSegmentation *	segmentation,
		MultiLabelSegmentation::LabelValueType	labelValue,
		bool	createBinaryMap = true
	)

Function creates a binary mask representing only the specified label of the multi label segmentation.

Parameters

[in]	segmentation	Pointer to the segmentation that is the source for the mask.
[in]	labelValue	The label that should be extracted.
[in]	createBinaryMap	If true, label pixels are set to 1; if false, they keep their label value.

Precondition

segmentation must point to a valid instance.

labelValue must exist in segmentation.

CreateTestInstancePropertyPersistence()

MITKCORE_EXPORT IPropertyPersistence* mitk::CreateTestInstancePropertyPersistence

(

)

Creates an unmanaged (!) instance of PropertyPersistence for testing purposes.

The caller is responsible for managing the lifetime of the returned instance.

Returns

A raw pointer to a new PropertyPersistence instance.

CreateTestInstancePropertyRelations()

MITKCORE_EXPORT IPropertyRelations* mitk::CreateTestInstancePropertyRelations

(

)

Create an unmanaged instance of PropertyRelations for testing purposes.

Warning

The caller is responsible for the lifetime of the returned pointer. This function is intended for unit tests only.

CreateTestInstancePropertyTransience()

MITKCORE_EXPORT IPropertyTransience* mitk::CreateTestInstancePropertyTransience

(

)

Creates an unmanaged (!) instance of PropertyTransience for testing purposes.

The caller is responsible for managing the lifetime of the returned instance.

Returns

A raw pointer to a new PropertyTransience instance.

CreateVectorFromIntensityProfile()

MITKIMAGESTATISTICS_EXPORT std::vector<IntensityProfile::MeasurementType> mitk::CreateVectorFromIntensityProfile

(

IntensityProfile::ConstPointer

intensityProfile

)

Convert an intensity profile to a standard library vector.

Parameters

[in]

intensityProfile

An intensity profile.

Returns

Standard library vector which contains the input intensity profile measurements.

DeduceDecayCorrection()

DecayCorrectionInfo MITKPET_EXPORT mitk::DeduceDecayCorrection	(	const mitk::SlicedData *	data,
		double	halfLifeSeconds = std::numeric_limits< double >::quiet_NaN(),
		DICOMReadPolicy	policy = DICOMReadPolicy::Lenient
	)

Deduce the residual decay correction needed to compute SUV.

Reads (0054,1102) Decay Correction and produces a DecayCorrectionInfo whose decayTimes map can be plugged into the SUV functor unchanged. The residual decay term then accounts only for what the scanner did NOT already apply.

DC = ADMIN

Pixel data is already decay-corrected to the administration time; the helper fills the map with 0.0 for every (timestep, slice), so the SUV decay term collapses to 2^0 = 1.

DC = START

Pixel data is decay-corrected to a vendor-specific reference time. The helper applies the IBSI-SUV-recommended fallback chain in priority order; the first condition whose preconditions are met determines the result. The numbered steps below define the chain; "Step N" anywhere in the PET sources, tests, or commit messages refers back to this list.

1. Vendor private datetime tag. Siemens: (0071,0x22) "SIEMENS MED PT" decay-correction datetime (lifted to property mitk.pet.SiemensDecayDateTime by BaseDICOMReaderService); GE: (0009,0x0D) "GEMS_PETD_01" scan datetime (lifted to mitk.pet.GEScanDateTime). Used as the uniform reference time when present and yielding a non-negative decay.
2. AcquisitionTime equals SeriesTime. Manufacturer in {Siemens, GE, Philips} and (0008,0032) AcquisitionTime equals (0008,0031) SeriesTime in seconds at slice 0: use per-slice AcquisitionTime as the reference.
3. Siemens / Philips, vendor T_ave formula. Manufacturer in {Siemens, Philips}, per-slice (0008,0032) AcquisitionTime, (0054,0x1300) FrameReferenceTime, and (0018,0x1242) ActualFrameDuration available: per-slice reference time = AcquisitionTime + T_ave - FrameReferenceTime, with T_ave the closed-form average count-rate time over the frame.
4. GE, vendor -ΔFrameRef formula. Manufacturer = GE, same per-slice tags available: per-slice reference time = AcquisitionTime - FrameReferenceTime.

Steps 3 and 4 are vendor-specific empirical formulas; they fire only under DICOMReadPolicy::Lenient. Under DICOMReadPolicy::Strict they are refused and the helper raises VendorEmpiricalDecayFallbackRefusedException.

If none of these applies — typically an "Other" manufacturer with no private datetime tag and no per-slice frame timing — the helper raises AmbiguousDecayTimingException rather than silently extending one of the vendor-specific formulas to an input we cannot classify.

DC = NONE

Pixel data is not decay-corrected. The voxel value is the count rate averaged over the frame, which equals the instantaneous count rate at AcquisitionTime + T_ave. The helper therefore computes per-slice decay = (AcquisitionTime + T_ave) - InjectionDateTime, where T_ave is derived from per-slice (0018,0x1242) ActualFrameDuration. Inputs that lack the frame-duration tag raise MissingDICOMPropertyException; –decay-time is the documented escape hatch for inputs whose timing must be supplied out-of-band.

The radiopharmaceutical injection time is read from (0054,0016)[*](0018,1078) Radiopharmaceutical Start DateTime if present, otherwise from (0054,0016)[*](0018,1072) Radiopharmaceutical Start Time (in which case the acquisition date is used to assemble a complete timestamp, with a 24 h rollover correction if the resulting decay would be negative).

Parameters

[in]	data	The input data. Must be a valid SlicedData instance whose time geometry and DICOM properties are populated.
[in]	halfLifeSeconds	The radionuclide half-life in seconds, used for T_ave in DC=START Steps 3 and DC=NONE. If NaN (default), the helper falls back to item 0 of the Radiopharmaceutical Information Sequence — convenient for tests and single-tracer datasets, but multi-tracer callers should pass the resolved value explicitly.
[in]	policy	Controls whether IBSI-SUV-recommended empirical adaptations are applied. Lenient (default) enables DC=START Steps 3 / 4 of the DC=START fallback chain"; Strict refuses them and raises VendorEmpiricalDecayFallbackRefusedException so callers can surface the underlying input ambiguity.

Returns

The strategy plus a fully populated decay-time map.

Exceptions

mitk::Exception	if data is nullptr.
MissingDICOMPropertyException	if a DICOM property required for the detected strategy is missing (including frame-timing tags for DC=NONE).
InvalidDICOMPropertyValueException	if (0054,1102) holds an unsupported value, or if a tag value cannot be parsed.
AmbiguousDecayTimingException	if the radiopharmaceutical injection time and the acquisition / series reference time cannot be reconciled into a non-negative decay duration within 24 h, or if none of the DC=START fallback conditions applies.
VendorEmpiricalDecayFallbackRefusedException	if policy is Strict and DC=START would have been resolved through Step 3 or Step 4 of the DC=START fallback chain" (vendor-specific empirical formula).

See also

GetDecayCorrectionStrategy, GetManufacturerFamily, computeSUVbwScaleFactor

DetermineImageDimensionsFromTimeGeometry()

MITKCORE_EXPORT ImageDimensionVectorType mitk::DetermineImageDimensionsFromTimeGeometry

(

const TimeGeometry *

timeGeometry

)

DICOM_IMAGING_FREQUENCY_PATH()

DICOMTagPath mitk::DICOM_IMAGING_FREQUENCY_PATH

(

)

Return the DICOMTagPath for the Imaging Frequency DICOM tag.

DICOMStringToOrientationVectors()

void mitk::DICOMStringToOrientationVectors	(	const std::string &	s,
		Vector3D &	right,
		Vector3D &	up,
		bool &	successful
	)

Convert DICOM string describing a point to two Vector3D instances.

DICOM tags like ImageOrientationPatient contain two vectors as float numbers separated by backslashes:

42.7131\13.77\0.7\137.76\0.3

Parse a DICOM orientation string into two direction vectors.

Parameters

[in]	s	The DICOM string (e.g. from ImageOrientationPatient).
[out]	right	The "right" direction vector.
[out]	up	The "up" direction vector.
[out]	successful	Set to true if parsing succeeded, false otherwise.

DICOMStringToPoint3D()

Point3D mitk::DICOMStringToPoint3D	(	const std::string &	s,
		bool &	successful
	)

Convert DICOM string describing a point to Point3D.

DICOM tags like ImagePositionPatient contain a position as float numbers separated by backslashes:

42.7131\13.77\0.7

DICOMStringToSpacing()

bool mitk::DICOMStringToSpacing	(	const std::string &	s,
		ScalarType &	spacingX,
		ScalarType &	spacingY
	)

Parse a DICOM spacing string into X and Y spacing values.

Parameters

[in]	s	The DICOM string (e.g. from PixelSpacing).
[out]	spacingX	The spacing in X direction in mm.
[out]	spacingY	The spacing in Y direction in mm.

Returns

true if parsing succeeded, false otherwise.

DICOMTagPathToDCMTKSearchPath()

MITKDICOM_EXPORT std::string mitk::DICOMTagPathToDCMTKSearchPath

(

const DICOMTagPath &

tagPath

)

Converts a passed path into a search string for the DCMTK DcmPathProcessor.

Precondition

tagPath must be an explicit (DICOMTagPath::IsExplicit()) path or must only contain selection wild cards (DICOMTagPath::HasItemSelectionWildcardsOnly()).

DICOMTagPathToPersistenceKeyRegEx()

MITKDICOM_EXPORT std::string mitk::DICOMTagPathToPersistenceKeyRegEx

(

const DICOMTagPath &

tagPath

)

Convert a DICOMTagPath to a regular expression for persistence key matching.

Parameters

[in]

tagPath

The path to convert.

Returns

A regular expression string for persistence keys.

DICOMTagPathToPersistenceKeyTemplate()

MITKDICOM_EXPORT std::string mitk::DICOMTagPathToPersistenceKeyTemplate

(

const DICOMTagPath &

tagPath

)

Convert a DICOMTagPath to a persistence key template string.

Parameters

[in]

tagPath

The path to convert.

Returns

A persistence key template string.

DICOMTagPathToPersistenceNameTemplate()

MITKDICOM_EXPORT std::string mitk::DICOMTagPathToPersistenceNameTemplate

(

const DICOMTagPath &

tagPath

)

Convert a DICOMTagPath to a persistence name template string.

Parameters

[in]

tagPath

The path to convert.

Returns

A persistence name template string.

DICOMTagPathToPropertyName()

MITKDICOM_EXPORT std::string mitk::DICOMTagPathToPropertyName

(

const DICOMTagPath &

tagPath

)

returns the correct property name for a given DICOMTagPath instance.

DICOMTagPathToPropertyRegEx()

MITKDICOM_EXPORT std::string mitk::DICOMTagPathToPropertyRegEx

(

const DICOMTagPath &

tagPath

)

Convert a DICOMTagPath to a regular expression that matches the corresponding property name.

Parameters

[in]

tagPath

The path to convert.

Returns

A regular expression string.

DICOMTagPathToReadableName()

MITKDICOM_EXPORT std::string mitk::DICOMTagPathToReadableName	(	const DICOMTagPath &	tagPath,
		bool	includeTagNumbers = false
	)

Converts a DICOM tag path to a human-readable description. This function uses DCMTK/GDCM dictionaries to resolve tag names. For sequences, it shows the hierarchy with proper descriptions.

Parameters

[in]	tagPath	The path to convert.
[in]	includeTagNumbers	If true, includes tag numbers in format "Name (GGGG,EEEE)".

Returns

A human-readable string describing the path. Example: "Patient Name" or "Referenced Study Sequence[0].Study Instance UID"

DifferenceBiggerOrEqualEps()

template<typename DifferenceType >

bool mitk::DifferenceBiggerOrEqualEps ( DifferenceType  diff, mitk::ScalarType  epsilon = mitk::eps  )

inline

Check if the absolute difference is bigger than or equal to a given epsilon.

Parameters

[in]	diff	The difference to be checked against epsilon.
[in]	epsilon	The absolute difference needs to be smaller than this.

Returns

True if abs(diff) >= epsilon.

Definition at line 32 of file mitkEqual.h.

Referenced by Equal(), and MatrixEqualElementWise().

DisableBackends()

void MITKLOG_EXPORT mitk::DisableBackends

(

LogBackendBase::OutputType

type

)

Disable all backends of the given output type.

Backends of this type will stop receiving log messages until re-enabled. The backends remain registered but are skipped during message distribution.

Parameters

[in]

type

The output type to disable.

See also

EnableBackends(), IsBackendEnabled()

DistributeToBackends()

void MITKLOG_EXPORT mitk::DistributeToBackends

(

LogMessage &

message

)

Distribute a log message to all registered and enabled backends.

Trims trailing whitespace from the message text, then iterates over all registered backends and calls ProcessMessage() on each whose OutputType is enabled.

If no backend is registered, a default LogBackendCout is created and registered automatically to ensure output is never silently lost.

Note

This function should only be called internally by PseudoLogStream upon destruction. Do not call directly; use the MITK_INFO, MITK_WARN, MITK_ERROR, MITK_FATAL, or MITK_DEBUG macros instead.

Parameters

[in,out]

message

The log message to distribute. The Message field may be modified (trailing whitespace is trimmed).

Referenced by mitk::PseudoLogStream::~PseudoLogStream().

EnableBackends()

void MITKLOG_EXPORT mitk::EnableBackends

(

LogBackendBase::OutputType

type

)

Enable all backends of the given output type.

Backends of this type will resume receiving log messages. All output types are enabled by default.

Parameters

[in]

type

The output type to enable.

See also

DisableBackends(), IsBackendEnabled()

EndsWithCaseInsensitive()

MITKCORE_EXPORT bool mitk::EndsWithCaseInsensitive	(	const std::string &	str,
		const std::string &	suffix
	)

Case-insensitive check whether str ends with suffix.

Only the trailing characters of str are compared against suffix, without regard to case, so suffix may be given in any case. Useful to route files by filename suffix (for example ".mitkscene.json" or ".json"), where std::filesystem::path::extension() is insufficient because it returns only the last extension.

An empty suffix matches any string. A suffix longer than str never matches.

EnsureUID() [1/2]

NodeUIDType MITKMATCHPOINTREGISTRATION_EXPORT mitk::EnsureUID

(

mitk::BaseData *

data

)

Ensures that the given BaseData has a UID property ("data.UID").

If the property does not yet exist, a new UID is generated and set on the data object.

Parameters

[in]

data

Pointer to the BaseData to check/update.

Returns

The UID string associated with the data object.

Precondition

data must point to a valid instance.

Exceptions

mitk::Exception

if data is nullptr.

See also

CheckUID(const mitk::BaseData*, const NodeUIDType&)

EnsureUID() [2/2]

NodeUIDType MITKMATCHPOINTREGISTRATION_EXPORT mitk::EnsureUID

(

mitk::DataNode *

node

)

Ensures that the given DataNode has a UID property ("matchpoint.UID").

If the property does not yet exist, a new UID is generated and set on the node.

Parameters

[in]

node

Pointer to the DataNode to check/update.

Returns

The UID string associated with the node.

Precondition

node must point to a valid instance.

Exceptions

mitk::Exception

if node is nullptr.

See also

CheckUID(const mitk::DataNode*, const NodeUIDType&)

Equal() [1/4]

MITKCORE_EXPORT bool mitk::Equal	(	const mitk::GeometryTransformHolder &	leftHandSide,
		const mitk::GeometryTransformHolder &	rightHandSide,
		ScalarType	eps,
		bool	verbose
	)

Compare two GeometryTransformHolder objects for equality.

Parameters

leftHandSide	First transform holder.
rightHandSide	Second transform holder.
eps	Tolerance for floating-point comparison.
verbose	If true, print details about differences.

Returns

true if the two transform holders are equal within the given tolerance.

Equal() [2/4]

MITKCORE_EXPORT bool mitk::Equal	(	const mitk::GeometryTransformHolder *	leftHandSide,
		const mitk::GeometryTransformHolder *	rightHandSide,
		ScalarType	eps,
		bool	verbose
	)

Compare two GeometryTransformHolder objects for equality (pointer version).

Parameters

leftHandSide	Pointer to first transform holder.
rightHandSide	Pointer to second transform holder.
eps	Tolerance for floating-point comparison.
verbose	If true, print details about differences.

Returns

true if the two transform holders are equal within the given tolerance.

Equal() [3/4]

MITKPLANARFIGURE_EXPORT bool mitk::Equal	(	const mitk::PlanarFigure &	leftHandSide,
		const mitk::PlanarFigure &	rightHandSide,
		ScalarType	eps,
		bool	verbose
	)

Compares two PlanarFigure objects with a tolerance for floating-point values.

Parameters

[in]	leftHandSide	The first PlanarFigure.
[in]	rightHandSide	The second PlanarFigure.
[in]	eps	Tolerance for floating-point comparisons.
[in]	verbose	If true, logs details about differences.

Returns

True if both figures are considered equal within the given tolerance.

Equal() [4/4]

MITKNEWMODULE_EXPORT bool mitk::Equal	(	mitk::ExampleDataStructure *	leftHandSide,
		mitk::ExampleDataStructure *	rightHandSide,
		mitk::ScalarType	eps,
		bool	verbose
	)

Returns true if the example data structures are considered equal.

They are considered equal if their string is equal

Referenced by mitk::mitkModelTestFixture::CompareModelAndReferenceDerivedParameters(), mitk::mitkModelTestFixture::CompareModelAndReferenceSignal(), and EqualArray().

EqualArray()

template<typename TArrayType1 , typename TArrayType2 >

bool mitk::EqualArray ( TArrayType1 &  arrayType1, TArrayType2 &  arrayType2, int  size, ScalarType  eps = mitk::eps, bool  verbose = false  )

inline

Compare two array-like objects element-wise for equality within a tolerance.

ArrayTypes are all types that implement operator[]. Pay attention not to set size higher than the actual size of the ArrayType as this will lead to unexpected results.

Parameters

[in]	arrayType1	First array to compare.
[in]	arrayType2	Second array to compare.
[in]	size	Number of elements to compare.
[in]	eps	Tolerance for floating point comparison.
[in]	verbose	Flag indicating detailed console output.

Returns

True if all compared elements are equal within the given tolerance.

Definition at line 133 of file mitkArray.h.

References ConditionalOutputOfDifference(), eps, and Equal().

ExtractCESTOffset()

MITKCEST_EXPORT std::vector<ScalarType> mitk::ExtractCESTOffset

(

const BaseData *

image

)

Extract CEST frequency offsets from an image's properties as a vector.

Reads the "CEST.Offsets" property from the input image, parses the space-separated offset values, and returns them as a vector of ScalarType. Offsets with absolute value > 299 indicate M0 normalization images.

Parameters

[in]

image

Pointer to the BaseData (typically an mitk::Image) from which to extract the offsets.

Returns

A vector of offset values in ppm, one per timestep.

Postcondition

The number of extracted offsets equals the number of timesteps of the image.

Exceptions

mitk::Exception	if the image has no "CEST.Offsets" property.
mitk::Exception	if the number of parsed offsets does not match the number of timesteps.

See also

CEST_PROPERTY_NAME_OFFSETS, CESTImageNormalizationFilter

ExtractCESTT1Time()

MITKCEST_EXPORT std::vector<ScalarType> mitk::ExtractCESTT1Time

(

const BaseData *

image

)

Extract CEST T1 recovery times from an image's properties as a vector.

Reads the "CEST.TREC" property from the input image, parses the space-separated time values (stored in milliseconds), converts them to seconds (by multiplying with 0.001), and returns them as a vector of ScalarType.

Parameters

[in]

image

Pointer to the BaseData (typically an mitk::Image) from which to extract the T1 recovery times.

Returns

A vector of T1 recovery times in seconds, one per timestep.

Postcondition

The number of extracted T1 times equals the number of timesteps of the image.

Exceptions

mitk::Exception	if the image has no "CEST.TREC" property.
mitk::Exception	if the number of parsed T1 times does not match the number of timesteps.

See also

CEST_PROPERTY_NAME_TREC, CustomTagParser

ExtractParameterValueMapFromModelFit() [1/2]

MITKMODELFIT_EXPORT ParameterValueMapType mitk::ExtractParameterValueMapFromModelFit	(	const mitk::modelFit::ModelFitInfo *	fitInfo,
		const ::itk::Index< 3 > &	index
	)

ExtractParameterValueMapFromModelFit() [2/2]

MITKMODELFIT_EXPORT ParameterValueMapType mitk::ExtractParameterValueMapFromModelFit	(	const mitk::modelFit::ModelFitInfo *	fitInfo,
		const mitk::Point3D &	position
	)

Helper function that extracts a map (keys are the parameter names, values are the associated parameter values) of parameter values for the specified 3D point given a model fit info instance.

Precondition

fit must point to a valid instance.

ExtractTimeGrid() [1/2]

MITKMODELFIT_EXPORT ModelBase::TimeGridType mitk::ExtractTimeGrid

(

const Image *

image

)

Extracts the time grid of an image (its time geometry) for usage with models.

Time grid is empty (size == 0) if image pointer is invalid.

Remarks

The model time grid has a resolution in seconds, not milliseconds like the time geometry.

ExtractTimeGrid() [2/2]

MITKMODELFIT_EXPORT ModelBase::TimeGridType mitk::ExtractTimeGrid

(

const TimeGeometry *

geometry

)

Extracts the time grid of a time geometry for usage with models.

Time grid is empty (size == 0) if geometry pointer is invalid.

Remarks

The model time grid has a resolution in seconds, not milliseconds like the time geometry.

ExtractTimeStepFromTemporoSpatialStringProperty()

TemporoSpatialStringProperty::Pointer MITKCORE_EXPORT mitk::ExtractTimeStepFromTemporoSpatialStringProperty	(	const TemporoSpatialStringProperty *	tsProperty,
		TimeStepType	ts
	)

Helper function that extracts the information of a time step out of a TemporoSpatialStringProperty and returns a TemporoSpatialStringProperty that only contains that time step.

Parameters

tsProperty	The source property from which the values should be extracted.
ts	The time point that should be extracted.

Precondition

tsProperty must point to a valid instance.

ts must indicate a time step that exists in tsProperty.

Returns

Returns a TemporoSpatialStringProperty instance that only contains the values of the indicated time step. In the result the time step is always time step 0.

FastSinglePixelAccess() [1/2]

template<class TPixel >

mitk::ScalarType mitk::FastSinglePixelAccess	(	mitk::PixelType	,
		mitk::Image::ConstPointer	im,
		const ImageDataItem *	item,
		itk::Index< 3 >	idx,
		mitk::ScalarType &	val,
		int	component = 0
	)

Const overload of FastSinglePixelAccess

Definition at line 189 of file mitkImagePixelReadAccessor.h.

References mitk::ImagePixelReadAccessor< TPixel, VDimension >::GetConsecutivePixelsAsVector(), and mitk::ImageAccessorBase::IgnoreLock.

FastSinglePixelAccess() [2/2]

template<class TPixel >

mitk::ScalarType mitk::FastSinglePixelAccess	(	mitk::PixelType	,
		mitk::Image::Pointer	im,
		ImageDataItem *	item,
		itk::Index< 3 >	idx,
		mitk::ScalarType &	val,
		int	component = 0
	)

Static method that gets direct access to a single pixel value. The value is not guaranteed to be in a well-defined state and is automatically casted to mitk::ScalarType The method can be called by the macros in mitkPixelTypeMultiplex.h

Definition at line 175 of file mitkImagePixelReadAccessor.h.

References mitk::ImagePixelReadAccessor< TPixel, VDimension >::GetConsecutivePixelsAsVector(), and mitk::ImageAccessorBase::IgnoreLock.

FillArray() [1/2]

template<typename ArrayType , typename TCoordRep , unsigned int NVectorDimension>

itk::FixedArray<TCoordRep, NVectorDimension> mitk::FillArray

(

const ArrayType &

array

)

Copy elements of an array into a new itk::FixedArray and return it.

Parameters

[in]

array

The array whose values will be copied. Must be of a type which overrides the [] operator.

Returns

A new FixedArray (e.g., mitk::Vector or mitk::Point) holding the elements of array.

Attention

array must be of dimension NVectorDimension!

This method implicitly converts between data types.

Definition at line 56 of file mitkArray.h.

References FillArray().

FillArray() [2/2]

template<typename ArrayType , typename TCoordRep , unsigned int NVectorDimension>

void mitk::FillArray	(	itk::FixedArray< TCoordRep, NVectorDimension > &	toArray,
		const ArrayType &	array
	)

Methods to copy between itk::FixedArray types (like mitk::Vector and mitk::Point) and ArrayTypes.

ArrayTypes here are all types that implement operator[]. The templated methods are free-floating so you may specialize them for your concrete type.

Copy elements of an array into an itk::FixedArray.

Parameters

[out]	toArray	The FixedArray (e.g., mitk::Vector or mitk::Point) which should hold the elements of array.
[in]	array	The array whose values will be copied. Must be of a type which overrides the [] operator.

Attention

array must be of dimension NVectorDimension!

This method implicitly converts between data types.

Definition at line 39 of file mitkArray.h.

Referenced by FillArray(), mitk::BaseGeometry::ItkPhysicalPointToWorld(), and mitk::BaseGeometry::WorldToItkPhysicalPoint().

FillVector3D()

template<class Tout >

void mitk::FillVector3D ( Tout &  out, mitk::ScalarType  x, mitk::ScalarType  y, mitk::ScalarType  z  )

inline

Fill a 3D array/vector with the given x, y, z values.

Definition at line 102 of file mitkArray.h.

Referenced by mitk::Image::InitializeByItk().

FillVector4D()

template<class Tout >

void mitk::FillVector4D ( Tout &  out, mitk::ScalarType  x, mitk::ScalarType  y, mitk::ScalarType  z, mitk::ScalarType  t  )

inline

Fill a 4D array/vector with the given x, y, z, t values.

Definition at line 111 of file mitkArray.h.

FilterDICOMFilesForSameSeries()

DICOMFilePathList MITKDICOM_EXPORT mitk::FilterDICOMFilesForSameSeries	(	const std::string &	refFilePath,
		const DICOMFilePathList &	fileList
	)

Filter DICOM files to return only those in the same series as a reference file.

Returns all DICOM files passed with fileList that have the same Series Instance UID as the passed refFilePath.

Parameters

[in]	refFilePath	Path to the reference DICOM file whose Series Instance UID is used for filtering.
[in]	fileList	The list of candidate DICOM file paths.

Returns

A list of DICOM file paths that share the same Series Instance UID as refFilePath.

Precondition

refFilePath must point to a valid DICOM file.

See also

GetDICOMFilesInSameDirectory, FilterForDICOMFiles

FilterForDICOMFiles()

DICOMFilePathList MITKDICOM_EXPORT mitk::FilterForDICOMFiles

(

const DICOMFilePathList &

fileList

)

Filter a file list to contain only valid DICOM files.

All passed files will be checked if they are DICOM files. All DICOM files will be added to the result and returned.

Parameters

[in]

fileList

The list of file paths to filter.

Returns

A list of paths that are valid DICOM files.

Note

The helper does no sorting of any kind.

See also

GetDICOMFilesInSameDirectory

FindClosestSegmentationMask()

MITKREGISTRATIONONTOLOGY_EXPORT void mitk::FindClosestSegmentationMask

(

)

Find the closest segmentation mask for lesion propagation.

Uses the MatchPoint registration ontology to locate the segmentation mask that is closest to the given lesion in the registration graph.

Note

Currently a stub/placeholder implementation.

FindIndexedPropertyNames()

MITKCORE_EXPORT std::map<PropertyKeyPath::ItemSelectionIndex, std::string> mitk::FindIndexedPropertyNames	(	const IPropertyProvider *	provider,
		const PropertyKeyPath &	path
	)

Find indexed entries matching a PropertyKeyPath in a property provider.

Scans all property keys of the given provider and finds those matching the path pattern. The path must contain exactly one AnySelection node; the matched selection indices and their full property names are returned.

Parameters

[in]	provider	Pointer to the property provider whose keys are scanned.
[in]	path	PropertyKeyPath with exactly one AnySelection node.

Returns

A map with the selection index as key and the full property name as value.

Precondition

path must contain exactly one AnySelection node.

Exceptions

mitk::Exception

if the path does not contain exactly one AnySelection node.

FindTopmostVisibleNode()

MITKCORE_EXPORT DataNode::Pointer mitk::FindTopmostVisibleNode	(	const DataStorage::SetOfObjects::ConstPointer	nodes,
		const Point3D	worldPosition,
		const TimePointType	timePoint,
		const BaseRenderer *	baseRender
	)

Find the topmost visible node at a given world position and time point.

Among the provided nodes, this function returns the one that is visible, not a helper object, contains the given worldPosition within its geometry, has a valid time point, and has the highest "layer" IntProperty value.

Parameters

[in]	nodes	The candidate set of nodes. If null, returns nullptr.
[in]	worldPosition	The 3D position to test for containment.
[in]	timePoint	The time point that must be valid in the node's TimeGeometry.
[in]	baseRender	The renderer used for visibility and layer property lookup.

Returns

The topmost visible DataNode, or nullptr if no suitable node is found.

fresnel_c()

double mitk::fresnel_c

(

double

x

)

fresnel_c2()

double mitk::fresnel_c2

(

double

x

)

fresnel_s()

double mitk::fresnel_s

(

double

x

)

fresnel_s2()

double mitk::fresnel_s2

(

double

x

)

from_json() [1/11]

template<typename BasicJsonType >

void mitk::from_json ( const BasicJsonType &  j, IOVolumeSplitReason::ReasonType &  e  )

inline

Definition at line 171 of file mitkIOVolumeSplitReason.h.

References mitk::IOVolumeSplitReason::StringToType().

from_json() [2/11]

template<typename T >

void mitk::from_json	(	const nlohmann::json &	j,
		GenericLookupTable< T > &	t
	)

Deserialize a GenericLookupTable from JSON.

Definition at line 138 of file mitkGenericLookupTable.h.

from_json() [3/11]

MITKCORE_EXPORT void mitk::from_json	(	const nlohmann::json &	j,
		IOVolumeSplitReason &	reason
	)

Deserialize an IOVolumeSplitReason from a JSON object.

Parameters

[in]	j	The JSON value to parse.
[out]	reason	The IOVolumeSplitReason to populate.

from_json() [4/11]

MITKCORE_EXPORT void mitk::from_json	(	const nlohmann::json &	j,
		LevelWindow &	lw
	)

from_json() [5/11]

template<class TCoordRep , unsigned int NPointDimension>

void mitk::from_json	(	const nlohmann::json &	j,
		Point< TCoordRep, NPointDimension > &	p
	)

Deserialize a mitk::Point from a JSON array.

Definition at line 128 of file mitkPoint.h.

from_json() [6/11]

MITKROI_EXPORT void mitk::from_json	(	const nlohmann::json &	j,
		ROI::Element &	roi
	)

Deserialize a ROI::Element from JSON (nlohmann::json ADL customization point).

Parameters

[in]	j	The JSON object to read from.
[out]	roi	The ROI element to populate.

See also

to_json

from_json() [7/11]

MITKMODELFIT_EXPORT void mitk::from_json	(	const nlohmann::json &	j,
		ScalarListLookupTable &	lut
	)

from_json() [8/11]

template<class TCoordRep , unsigned int NVectorDimension>

void mitk::from_json	(	const nlohmann::json &	j,
		Vector< TCoordRep, NVectorDimension > &	v
	)

Deserialize a mitk::Vector from a JSON array.

Definition at line 163 of file mitkVector.h.

from_json() [9/11]

MITKPYTHONINSTALLER_EXPORT void mitk::from_json	(	const nlohmann::ordered_json &	j,
		PipInstallGroup &	g
	)

from_json() [10/11]

MITKPYTHONINSTALLER_EXPORT void mitk::from_json	(	const nlohmann::ordered_json &	j,
		PipInstallSpec &	s
	)

from_json() [11/11]

MITKPYTHONINSTALLER_EXPORT void mitk::from_json	(	const nlohmann::ordered_json &	j,
		PostInstallStep &	s
	)

FromJSON()

MITKCORE_EXPORT void mitk::FromJSON	(	const nlohmann::json &	j,
		AffineTransform3D::Pointer	transform
	)

Deserialize an AffineTransform3D from a JSON array with 16 elements (row-major 4x4 matrix).

Parameters

[in]	j	The JSON value to read from.
[in,out]	transform	The transform to populate.

Generate3DDeformationGlyph()

vtkSmartPointer<vtkPolyData> MITKMATCHPOINTREGISTRATION_EXPORT mitk::Generate3DDeformationGlyph	(	const mitk::BaseGeometry *	gridDesc,
		const map::core::RegistrationKernelBase< 3, 3 > *	regKernel
	)

Generate a 3D glyph representation of a registration kernel.

Parameters

[in]	gridDesc	The geometry defining the field of view.
[in]	regKernel	The registration kernel to visualize.

Returns

VTK poly data containing the glyph representation.

Generate3DDeformationGrid()

vtkSmartPointer<vtkPolyData> MITKMATCHPOINTREGISTRATION_EXPORT mitk::Generate3DDeformationGrid	(	const mitk::BaseGeometry *	gridDesc,
		unsigned int	gridFrequence,
		const map::core::RegistrationKernelBase< 3, 3 > *	regKernel = nullptr
	)

Generate a 3D deformation grid for visualizing a MatchPoint registration.

Parameters

[in]	gridDesc	The geometry defining the field of view.
[in]	gridFrequence	The grid sampling frequency.
[in]	regKernel	Optional registration kernel to deform the grid; nullptr for an undeformed grid.

Returns

VTK poly data representing the deformation grid.

GenerateAdditionalModelFitPlotData()

MITKMODELFIT_EXPORT PlotDataCurveCollection::Pointer mitk::GenerateAdditionalModelFitPlotData	(	const mitk::Point3D &	position,
		const mitk::modelFit::ModelFitInfo *	fitInfo,
		const mitk::ModelBase::TimeGridType &	timeGrid
	)

Function generates curve data for all additional inputs (e.g. ROI signal, AIF) stored in the fit information. The keys in the map are the same keys like in the fitInfo.

Parameters

position	The position in world coordinates the curve should be generated for.
fitInfo	Pointer to the fit info that defines the model/fit that produces the signal.
timeGrid	Defines the time grid of the generated signal.

Precondition

position must be within the model fit input image.

fitInfo must be a valid pointer.

GenerateDynamicTestImageMITK()

Image::Pointer MITKTESTINGHELPER_EXPORT mitk::GenerateDynamicTestImageMITK

(

)

Generate a 4D dynamic test image as a MITK Image.

Returns

A MITK Image with multiple time steps for dynamic image testing.

GenerateIdentityRegistration3D()

mitk::MAPRegistrationWrapper::Pointer MITKMATCHPOINTREGISTRATION_EXPORT mitk::GenerateIdentityRegistration3D

(

)

Generates a 3D identity registration wrapped as a MAPRegistrationWrapper.

Creates a dummy registration algorithm that produces an identity transform mapping, useful as a default or placeholder registration.

Returns

Smart pointer to a MAPRegistrationWrapper containing the 3D identity registration.

GenerateImageSamplePlotData()

MITKMODELFIT_EXPORT PlotDataCurve::Pointer mitk::GenerateImageSamplePlotData	(	const mitk::Point3D &	position,
		const mitk::Image *	image,
		const mitk::ModelBase::TimeGridType &	timeGrid
	)

Function generates curve data for a given image instance.

Parameters

position	The position in world coordinates the curve should be generated for.
image	Pointer to the image the signal should be extracted from.
timeGrid	Defines the time grid of the generated signal.

Precondition

position must be within the model fit input image.

image must be a valid pointer.

image time steps must equal the timeGrid size.

GenerateIsoLevels_Virtuos()

IsoDoseLevelSet::Pointer MITKRT_EXPORT mitk::GenerateIsoLevels_Virtuos

(

)

Generates a predefined set of iso dose levels following the Virtuos color scheme.

Creates an IsoDoseLevelSet containing 18 dose iso levels ranging from 1% to 150% of the reference dose, each with a distinct color and both iso line and color wash visibility enabled. This serves as the default color preset for RT dose visualization.

Returns

A smart pointer to the newly created IsoDoseLevelSet.

See also

IsoDoseLevelSet

IsoDoseLevel

GenerateLabelSetWithMappedValues()

MITKMULTILABEL_EXPORT MultiLabelSegmentation::LabelVectorType mitk::GenerateLabelSetWithMappedValues	(	const MultiLabelSegmentation::ConstLabelVectorType &	,
		LabelValueMappingVector	labelMapping
	)

Function takes a vector of labels and transfers all labels as clones with adapted label values to the result vector. The values will be adapted according to the provided mapping (key is the old value, value the new).

Remarks

: Only labels will be transferred, nothing else. So things like message observers or m_ReservedLabelValuesFunctor must be copied explicitly.

generateMappedResultNode()

MITKMATCHPOINTREGISTRATION_EXPORT mitk::DataNode::Pointer mitk::generateMappedResultNode	(	const std::string &	nodeName,
		mitk::BaseData::Pointer	mappedData,
		const std::string &	regUID,
		const std::string &	inputDataUID,
		const bool	refinedGeometry,
		const std::string &	interpolator = "Unkown"
	)

Generate a result data node for mapped data.

Parameters

[in]	nodeName	Name of the result node.
[in]	mappedData	Pointer to the mapped data (must not be nullptr).
[in]	regUID	UID string of the registration used to map the data.
[in]	inputDataUID	UID string of the data used as input for the mapping.
[in]	refinedGeometry	True if the geometry was refined rather than fully mapped.
[in]	interpolator	Name of the interpolation strategy used.

Returns

Pointer to a data node with all properties properly set.

generateModelFitResultImagePath()

MITKMODELFIT_EXPORT std::string mitk::generateModelFitResultImagePath	(	const std::string &	outputPathTemplate,
		const std::string &	parameterName
	)

Helper function that generates the file path that would be used to store an result image. The output path will be determined given the outputPathTemplate (which determines the directory, the basic file name and the file formate). The output file name is: <basic file name>_<parameterName>.<extension indicated by outputPathTemplate>

GenerateModelSignalPlotData()

MITKMODELFIT_EXPORT PlotDataCurve::Pointer mitk::GenerateModelSignalPlotData	(	const mitk::Point3D &	position,
		const mitk::modelFit::ModelFitInfo *	fitInfo,
		const mitk::ModelBase::TimeGridType &	timeGrid,
		mitk::ModelParameterizerBase *	parameterizer = nullptr
	)

Function generates curve data for the signal defined by the passed information.

Parameters

position	The position in world coordinates the curve should be generated for.
fitInfo	Pointer to the fit info that defines the model/fit that produces the signal.
timeGrid	Defines the time grid of the generated signal.
parameterizer	Pointer to a parameterizer instance that is used to configure the model to generate the signal. If pointer is not set, the default parameterizer based on the fitInfo instance will be used.

Precondition

position must be within the model fit input image.

fitInfo must be a valid pointer.

GenerateNameFromDICOMProperties()

std::string MITKDICOM_EXPORT mitk::GenerateNameFromDICOMProperties

(

const mitk::IPropertyProvider *

provider

)

Generate a human-readable name from DICOM properties of a data object.

Helper function that generates a name string (e.g. for DataNode names) from the DICOM properties of the passed provider instance.

Parameters

[in]

provider

The property provider to extract DICOM properties from.

Returns

A name string derived from DICOM tags. If the instance is nullptr or has no DICOM properties, DataNode::NO_NAME_VALUE() will be returned.

See also

IPropertyProvider

GeneratePropertyNameForDICOMTag()

std::string MITKCORE_EXPORT mitk::GeneratePropertyNameForDICOMTag	(	unsigned int	group,
		unsigned int	element
	)

Returns the correct property name for a simple DICOM tag.

The tag is defined by the passed group and element number (both in hex). The resulting name has the format "DICOM.GGGG.EEEE".

Parameters

group	the DICOM group number as a hex integer.
element	the DICOM element number as a hex integer.

Returns

The standardized property name string for the DICOM tag.

See also

GetDICOMPropertyValue

generateRegistrationResultNode()

MITKMATCHPOINTREGISTRATION_EXPORT mitk::DataNode::Pointer mitk::generateRegistrationResultNode	(	const std::string &	nodeName,
		mitk::MAPRegistrationWrapper::Pointer	resultReg,
		const std::string &	algorithmUID,
		const std::string &	movingDataUID,
		const std::string &	targetDataUID
	)

Generate a result data node for a registration wrapper.

Parameters

[in]	nodeName	Name of the result node.
[in]	resultReg	Pointer to the registration wrapper (must not be nullptr).
[in]	algorithmUID	UID string of the algorithm used to generate the result.
[in]	movingDataUID	UID string of the data used as moving input.
[in]	targetDataUID	UID string of the data used as target input.

Returns

Pointer to a data node with all properties properly set.

GenerateSupersampledTimeGrid()

MITKMODELFIT_EXPORT ModelBase::TimeGridType mitk::GenerateSupersampledTimeGrid	(	const mitk::ModelBase::TimeGridType &	grid,
		const unsigned int	samplingRate
	)

Supersamples a time grid by a given rate, interpolating linearly between original time steps.

Parameters

grid	The original time grid.
samplingRate	Number of samples between original time steps (including the preceding step). A rate of 1 returns the original grid; a rate of 3 generates two additional steps between originals.

GenerateTestFrame()

Image::Pointer MITKTESTINGHELPER_EXPORT mitk::GenerateTestFrame

(

double

timePoint

)

Generate a single MITK image frame for a specific time point.

Parameters

timePoint

The time point value for this frame.

Returns

A MITK Image representing a single frame of a dynamic image.

GenerateTestImage()

TestImageType::Pointer MITKTESTINGHELPER_EXPORT mitk::GenerateTestImage

(

int

factor = 1

)

Generate a test ITK image with deterministic intensity values.

Parameters

factor

Multiplicative factor applied to voxel values.

Returns

A 3D ITK integer image suitable for unit tests.

GenerateTestMask()

TestMaskType::Pointer MITKTESTINGHELPER_EXPORT mitk::GenerateTestMask

(

)

Generate a binary test mask as an ITK image.

Returns

A 3D unsigned-char ITK image with a deterministic mask pattern.

GenerateTestMaskMITK()

Image::Pointer MITKTESTINGHELPER_EXPORT mitk::GenerateTestMaskMITK

(

)

Generate a test mask as a MITK Image.

Returns

A MITK Image containing a binary mask pattern for testing.

GenerateTimeInInputRegion() [1/2]

template<class TOutputRegion , class TInputRegion >

void mitk::GenerateTimeInInputRegion	(	const mitk::TimeGeometry *	outputTimeGeometry,
		const TOutputRegion &	outputRegion,
		const mitk::TimeGeometry *	inputTimeGeometry,
		TInputRegion &	inputRegion
	)

Convert the start- and end-index-time of output-region in start- and end-index-time of input-region via millisecond-time.

Parameters

outputTimeGeometry	The time geometry of the output data.
outputRegion	The output region whose time indices are to be converted.
inputTimeGeometry	The time geometry of the input data.
inputRegion	The input region that will receive the converted time indices.

Definition at line 30 of file mitkTimeHelper.h.

References mitk::TimeGeometry::IsValidTimeStep(), mitk::TimeGeometry::TimePointToTimeStep(), and mitk::TimeGeometry::TimeStepToTimePoint().

Referenced by GenerateTimeInInputRegion().

GenerateTimeInInputRegion() [2/2]

template<class TOutputData , class TInputData >

void mitk::GenerateTimeInInputRegion	(	const TOutputData *	output,
		TInputData *	input
	)

Convert the start- and end-index-time of output in start- and end-index-time of input1 and input2 via millisecond-time.

Parameters

output	The output data whose time region is used as reference.
input	The input data whose requested region will be updated.

Definition at line 64 of file mitkTimeHelper.h.

References GenerateTimeInInputRegion().

GetAllStatisticNames() [1/2]

MITKIMAGESTATISTICS_EXPORT ImageStatisticsContainer::ImageStatisticsObject::StatisticNameVector mitk::GetAllStatisticNames

(

const ImageStatisticsContainer *

container

)

Collect all statistic names (default and custom) from a single container.

Parameters

[in]

container

Pointer to the ImageStatisticsContainer to query.

Returns

Vector of all statistic names present across all labels and time steps.

GetAllStatisticNames() [2/2]

MITKIMAGESTATISTICS_EXPORT ImageStatisticsContainer::ImageStatisticsObject::StatisticNameVector mitk::GetAllStatisticNames

(

std::vector< ImageStatisticsContainer::ConstPointer >

containers

)

Collect all statistic names from a vector of containers.

Parameters

[in]

containers

Vector of const pointers to ImageStatisticsContainer objects.

Returns

Union of all statistic names present across all containers.

GetBackwardsCompatibleDICOMPropertyValue()

bool MITKCORE_EXPORT mitk::GetBackwardsCompatibleDICOMPropertyValue	(	unsigned int	group,
		unsigned int	element,
		std::string const &	backwardsCompatiblePropertyName,
		PropertyList const *	propertyList,
		std::string &	propertyValue
	)

Retrieve a DICOM property value as a string, with backwards-compatible naming.

Like GetDICOMPropertyValue(), but if the standardized property (see GeneratePropertyNameForDICOMTag()) is absent, it falls back to a deprecated/old property name. Use this only where backwards compatibility with the old naming style is needed; otherwise prefer GetDICOMPropertyValue().

Note

Renamed from GetBackwardsCompatibleDICOMProperty (the old name misleadingly suggested it returned a property object rather than a value). This is a breaking API change; downstream call sites must be updated.

Parameters

group	searched DICOM group number as hex integer.
element	searched DICOM element number as hex integer.
backwardsCompatiblePropertyName	old string that was used for the property before.
propertyList	list of properties that should be searched.
propertyValue	[out] value of the found property. Only valid if function returns true.

Returns

True if the property was found and propertyValue contains a valid value.

See also

GeneratePropertyNameForDICOMTag, GetDICOMPropertyValue

GetCESTB1Amplitude()

double MITKCEST_EXPORT mitk::GetCESTB1Amplitude

(

const IPropertyProvider *

provider

)

Get the CEST B1 amplitude from a property provider.

Reads the "CEST.B1Amplitude" property and converts it to a double value.

Parameters

[in]

provider

Pointer to the property provider (e.g., an mitk::Image).

Returns

The B1 amplitude value.

Exceptions

mitk::Exception

if provider is nullptr or the property does not exist.

See also

CEST_PROPERTY_NAME_B1Amplitude

GetCESTDutyCycle()

double MITKCEST_EXPORT mitk::GetCESTDutyCycle

(

const IPropertyProvider *

provider

)

Get the CEST duty cycle from a property provider as a scaling factor.

Reads the "CEST.DutyCycle" property (stored as a percentage, e.g. 56 for 56%) and converts it to a scaling factor by multiplying with 0.01 (e.g., returns 0.56).

Parameters

[in]

provider

Pointer to the property provider (e.g., an mitk::Image).

Returns

The CEST duty cycle as a scaling factor in the range [0.0, 1.0].

Exceptions

mitk::Exception

if provider is nullptr or the property does not exist.

See also

CEST_PROPERTY_NAME_DutyCycle

GetCESTFrequency()

double MITKCEST_EXPORT mitk::GetCESTFrequency

(

const IPropertyProvider *

provider

)

Get the CEST frequency from a property provider in MHz.

Reads the "CEST.FREQ" property (stored in Hz) and converts it to MHz by multiplying with 1e-6.

Parameters

[in]

provider

Pointer to the property provider (e.g., an mitk::Image).

Returns

The CEST frequency in MHz.

Exceptions

mitk::Exception

if provider is nullptr or the property does not exist.

See also

CEST_PROPERTY_NAME_FREQ, SetCESTFrequencyMHz

GetCESTPulseDuration()

double MITKCEST_EXPORT mitk::GetCESTPulseDuration

(

const IPropertyProvider *

provider

)

Get the CEST pulse duration from a property provider in seconds.

Reads the "CEST.PulseDuration" property (stored in microseconds) and converts it to seconds by multiplying with 1e-6.

Parameters

[in]

provider

Pointer to the property provider (e.g., an mitk::Image).

Returns

The CEST pulse duration in seconds.

Exceptions

mitk::Exception

if provider is nullptr or the property does not exist.

See also

CEST_PROPERTY_NAME_PULSEDURATION

GetClassHierarchy()

template<typename T >

std::vector< std::string > mitk::GetClassHierarchy

(

)

Get the class hierarchy for MITK classes as a list of class names.

This function will return the name of classes and their direct super-classes as specified in the mitkClassMacro. The order is from most derived class to the last base class containing the mitkClassMacro.

Template Parameters

T	The MITK class type to inspect.

Returns

A vector of class name strings from most derived to base.

Definition at line 115 of file mitkGetClassHierarchy.h.

GetClassHierarchy< void >()

template<>

std::vector<std::string> mitk::GetClassHierarchy< void > ( )

inline

Definition at line 94 of file mitkGetClassHierarchy.h.

GetCornerPoints()

std::vector<mitk::Point3D> mitk::GetCornerPoints	(	mitk::BaseGeometry::Pointer	geometry,
		bool	visualizationOffset
	)

helper function for calculating corner points of the bounding object from a given geometry

GetCurrentDICOMTagsOfInterest()

DICOMTagPathMapType MITKDICOM_EXPORT mitk::GetCurrentDICOMTagsOfInterest

(

)

Returns the currently registered DICOM tags of interest.

Queries the IDICOMTagsOfInterest service for the tags that have been registered. This list may differ from the default list if additional tags have been added.

Returns

A map of tag paths to optional property names.

See also

GetDefaultDICOMTagsOfInterest, IDICOMTagsOfInterest, DICOMFileReader::SetAdditionalTagsOfInterest

GetDecayCorrectionStrategy()

DecayCorrectionStrategy MITKPET_EXPORT mitk::GetDecayCorrectionStrategy

(

const mitk::IPropertyProvider *

provider

)

Detect the DICOM Decay Correction strategy of the input data.

Reads DICOM tag (0054,1102) Decay Correction. The value is matched case-insensitively after trimming surrounding whitespace.

Parameters

[in]

provider

Source of DICOM properties.

Returns

The detected DecayCorrectionStrategy.

Exceptions

MissingDICOMPropertyException	if (0054,1102) is not present.
InvalidDICOMPropertyValueException	if (0054,1102) is present but holds a value other than ADMIN, START, or NONE.

See also

DeduceDecayCorrection

GetDefaultDICOMTagsOfInterest()

DICOMTagPathMapType MITKDICOM_EXPORT mitk::GetDefaultDICOMTagsOfInterest

(

)

Returns the default list of DICOM tags of interest.

Returns the built-in list of tags that are by default of interest and should be extracted when loading DICOM data. This can for instance be used with DICOMFileReader::SetAdditionalTagsOfInterest().

Returns

A map of tag paths to optional property names.

See also

GetCurrentDICOMTagsOfInterest, DICOMFileReader::SetAdditionalTagsOfInterest

GetDICOMFilesInSameDirectory()

DICOMFilePathList MITKDICOM_EXPORT mitk::GetDICOMFilesInSameDirectory

(

const std::string &

filePath

)

Search a directory for DICOM files.

Searches for all files in the directory of the passed file path. All files will be checked if they are DICOM files. All DICOM files will be added to the result and returned.

Parameters

[in]

filePath

A file path whose parent directory will be searched for DICOM files. If a directory path is passed, that directory is searched directly.

Returns

A list of absolute paths to all DICOM files found in the directory.

Note

The helper does no sorting of any kind.

See also

FilterForDICOMFiles, FilterDICOMFilesForSameSeries

GetDICOMPropertyForDICOMValuesFunctor()

MITKDICOM_EXPORT mitk::BaseProperty::Pointer mitk::GetDICOMPropertyForDICOMValuesFunctor

(

const DICOMCachedValueLookupTable &

cacheLookupTable

)

Functor to convert collected DICOM tag values into DICOMProperty instances.

Generation functor for DICOMFileReader classes. Given a lookup table of per-slice tag values, creates a single property: either a StringProperty (if all values are identical) or a TemporoSpatialStringProperty.

Parameters

[in]

cacheLookupTable

The lookup table mapping slice indices to cached DICOM values.

Returns

A smart pointer to the created BaseProperty.

See also

DICOMCachedValueLookupTable, DICOMImageBlockDescriptor::SetTagLookupTableToPropertyFunctor

GetDICOMPropertyValue()

bool MITKCORE_EXPORT mitk::GetDICOMPropertyValue	(	unsigned int	group,
		unsigned int	element,
		PropertyList const *	propertyList,
		std::string &	propertyValue
	)

Retrieve a DICOM tag's value as a string from a property list.

Looks up the property named by GeneratePropertyNameForDICOMTag() and returns its value via the generic BaseProperty::GetValueAsString(). Unlike PropertyList::GetStringProperty(), this resolves any property type, including the TemporoSpatialStringProperty that DICOM-tag properties use - GetStringProperty() only matches a plain StringProperty and would silently miss those.

Remarks

For a TemporoSpatialStringProperty the returned value is the one at the first time step / slice. Use this helper only for DICOM tags that are assumed uniform across all slices and time steps. If you need to keep backwards compatibility with the old (pre-standardized) property naming style, use GetBackwardsCompatibleDICOMPropertyValue() instead.

Parameters

group	searched DICOM group number as hex integer.
element	searched DICOM element number as hex integer.
propertyList	list of properties that should be searched.
propertyValue	[out] value of the found property. Empty when the function returns false.

Returns

True if the property was found and carries a non-empty value.

See also

GeneratePropertyNameForDICOMTag, GetBackwardsCompatibleDICOMPropertyValue

GetFacePlaneIntersectionCenter()

bool mitk::GetFacePlaneIntersectionCenter	(	const std::array< mitk::Point3D, 4 > &	faceCorners,
		const mitk::Point3D &	planeOrigin,
		const mitk::Vector3D &	planeNormal,
		mitk::Point3D &	center
	)

Intersect a planar, convex quad (given by its four perimeter-ordered corner points) with a plane and return the center of the resulting intersection segment.

Used to position a face handle where its box face crosses the current slice plane, so the handle stays on the rendered cross-section outline for arbitrarily oriented (oblique) boxes.

Parameters

	faceCorners	The four corner points of the face, in perimeter (winding) order.
	planeOrigin	A point on the plane.
	planeNormal	The plane normal (need not be normalized).
[out]	center	The center of the intersection segment, valid only if the function returns true.

Returns

true if the plane crosses the face (the handle is visible on this slice), false otherwise.

GetFirstDICOMValueAsString()

MITKDICOM_EXPORT std::string mitk::GetFirstDICOMValueAsString	(	const IPropertyProvider *	provider,
		const DICOMTagPath &	path
	)

Read the first matching DICOM property's string value.

Convenience wrapper for the (very common) "look up a single tag and read its string value at the default temporo-spatial slot" pattern. Returns an empty string if provider is nullptr or no property matches path.

Parameters

[in]	provider	The property provider to search.
[in]	path	The DICOMTagPath to look up.

Returns

For a DICOMProperty (TemporoSpatialStringProperty) match, the value at timeStep 0, slice 0, falling back to the closest earlier time step and slice if the exact slot is absent (allowCloseTime and allowCloseSlice both enabled). For any other property kind, its plain string value (GetValueAsString). Empty when no property matches.

See also

GetPropertyByDICOMTagPath

GetGeometryMismatchedSegmentationCount()

unsigned int MITKMULTILABEL_EXPORT mitk::GetGeometryMismatchedSegmentationCount	(	const mitk::DataStorage *	dataStorage,
		const mitk::BaseGeometry *	referenceGeometry
	)

Number of segmentation nodes whose geometry does not fit the reference.

Counts data nodes that are multi-label segmentations (as by GetMultiLabelSegmentationPredicate()) but whose geometry is not a sub-geometry of referenceGeometry, i.e. exactly the segmentations that GetMultiLabelSegmentationPredicate(referenceGeometry) excludes solely because of the geometry restriction. This is deliberately geometry-specific so the result cannot be conflated with segmentations filtered for other reasons.

Parameters

[in]	dataStorage	The data storage to inspect.
[in]	referenceGeometry	The geometry segmentations are expected to fit.

Returns

The number of geometry-mismatched segmentations. Returns 0 if dataStorage or referenceGeometry is null.

See also

GetMultiLabelSegmentationPredicate

GetGridGeometryFromNode()

void MITKMATCHPOINTREGISTRATION_EXPORT mitk::GetGridGeometryFromNode	(	const mitk::DataNode *	regNode,
		mitk::Geometry3D::Pointer &	gridDesc,
		unsigned int &	gridFrequ
	)

Generate the geometry info used to visualize a registration.

Extracts the grid geometry and grid frequency from the properties of the data node containing the registration.

Precondition

regNode is a correctly initialized data node of a registration.

Parameters

[in]	regNode	Pointer to the data node of the registration.
[out]	gridDesc	Smart pointer to the extracted grid geometry.
[out]	gridFrequ	Grid frequency stored in the regNode.

GetHandleFaceCornerIndices()

std::array<int, 4> mitk::GetHandleFaceCornerIndices

(

int

handleIndex

)

Return the four corner-point indices of the box face that the given handle sits on, ordered along the face perimeter so that consecutive indices (and the last-to-first pair) form the four face edges.

This is the face that is moved when the handle is dragged. In contrast to GetHandleIndices, which returns the opposite (anchor) face used during scaling, this returns the handle's own face in a winding order suitable for edge-based geometry such as plane intersection.

Parameters

handleIndex

The handle index (0-5).

GetHandleIndices()

std::vector<int> mitk::GetHandleIndices

(

int

index

)

Return the four corner-point indices that define the face associated with the given handle index.

Parameters

index

The handle index (0-5), corresponding to a face of the bounding box.

Returns

A vector of four indices into the corner points array.

GetImageStatisticsImagePredicate()

mitk::NodePredicateBase::Pointer MITKIMAGESTATISTICS_EXPORT mitk::GetImageStatisticsImagePredicate

(

)

Get a predicate for the ImageStatistics plugin input image.

The predicate matches: DataType:Image && !(Property:binary) && !(Property:helper object).

Returns

A node predicate suitable for selecting input images.

GetImageStatisticsMaskPredicate()

mitk::NodePredicateBase::Pointer MITKIMAGESTATISTICS_EXPORT mitk::GetImageStatisticsMaskPredicate

(

)

Get a predicate for the ImageStatistics plugin input mask.

The predicate matches multi-label segmentations; see GetMultiLabelSegmentationPredicate().

Returns

A node predicate suitable for selecting mask images.

GetImageStatisticsPlanarFigurePredicate()

mitk::NodePredicateBase::Pointer MITKIMAGESTATISTICS_EXPORT mitk::GetImageStatisticsPlanarFigurePredicate

(

)

Get a predicate for the ImageStatistics plugin planar figure.

The predicate matches: (DataType:PlanarCircle || DataType:PlanarRectangle || DataType:PlanarEllipse || DataType:PlanarDoubleEllipse || DataType:PlanarPolygon || DataType:PlanarSubdivisionPolygon || DataType:PlanarBezierCurve || DataType:PlanarLine) && !(Property:helper object).

Returns

A node predicate suitable for selecting planar figures.

GetManufacturerFamily()

ManufacturerFamily MITKPET_EXPORT mitk::GetManufacturerFamily

(

const mitk::IPropertyProvider *

provider

)

Classify the input's (0008,0070) Manufacturer into a family.

Case-insensitive substring match against trimmed (0008,0070) Manufacturer. Returns ManufacturerFamily::Other if the tag is missing, empty, or matches none of the recognized vendors.

Parameters

[in]

provider

Source of DICOM properties.

Returns

The inferred manufacturer family.

GetMultiLabelSegmentationPredicate()

mitk::NodePredicateBase::Pointer MITKMULTILABEL_EXPORT mitk::GetMultiLabelSegmentationPredicate

(

const mitk::BaseGeometry *

referenceGeometry = nullptr

)

Creates a predicate that matches valid multi-label segmentation data nodes.

The predicate checks for:

• Data type is MultiLabelSegmentation
• The node is NOT a binary image
• The node is NOT a helper object
• Optionally: the node geometry is a sub-geometry of the given reference geometry

Parameters

[in]

referenceGeometry

Optional reference geometry for sub-geometry filtering. If nullptr, no geometry check is performed.

Returns

A NodePredicateBase smart pointer for filtering data nodes.

See also

GetSegmentationReferenceImagePredicate

GetPatientsHeight()

double MITKPET_EXPORT mitk::GetPatientsHeight

(

const mitk::IPropertyProvider *

provider

)

Get the patient's height (size) from DICOM properties.

Extracts the patient height from DICOM tag (0010,1020) Patient Size, stored in the properties of the passed provider.

Parameters

[in]

provider

Source of DICOM properties.

Returns

The patient's height in [m].

Precondition

provider must point to a valid instance.

provider must contain a DICOM patient-size property.

Exceptions

MissingDICOMPropertyException

if provider is nullptr or contains no patient-size property.

GetPatientsSex()

Sex MITKPET_EXPORT mitk::GetPatientsSex

(

const mitk::IPropertyProvider *

provider

)

Get the patient's sex from DICOM properties as a typed enum.

Reads DICOM tag (0010,0040) Patient Sex (CS VR). The string value is matched case-insensitively after trimming surrounding whitespace. The values M, F, and O (Other) are accepted; the policy applied to Sex::Other is defined by the consuming normalization strategy and follows the IBSI-SUV benchmark recommendation (mean of male- and female-specific factors). DICOM's "U" (Unknown) and any other value remain invalid so callers cannot silently fall through with an under-specified input.

Parameters

[in]

provider

Source of DICOM properties.

Returns

The patient's sex as a Sex enum value.

Precondition

provider must point to a valid instance.

provider must contain a DICOM patient-sex property.

Exceptions

MissingDICOMPropertyException	if provider is nullptr or contains no patient-sex property.
InvalidDICOMPropertyValueException	if (0010,0040) holds a value other than M, F, or O.

GetPatientsWeight()

double MITKPET_EXPORT mitk::GetPatientsWeight

(

const mitk::IPropertyProvider *

provider

)

Get the patient's weight from DICOM properties.

Extracts the patient weight from DICOM tag (0010,1030) stored in the properties of the passed provider.

Parameters

[in]

provider

Source of DICOM properties.

Returns

The patient's weight in [kg].

Precondition

provider must point to a valid instance.

provider must contain a DICOM patient weight property.

Exceptions

MissingDICOMPropertyException

if provider is nullptr or contains no patient-weight property.

GetPreferredDataStorageInspector()

MITKQTWIDGETS_EXPORT DataStorageInspectorIDType mitk::GetPreferredDataStorageInspector

(

)

Returns the ID of the preferred data storage inspector.

Returns

The preferred inspector ID, or an empty string if none is set.

GetPropertyByDICOMTagPath()

MITKDICOM_EXPORT std::map<std::string, BaseProperty::ConstPointer> mitk::GetPropertyByDICOMTagPath	(	const IPropertyProvider *	provider,
		const DICOMTagPath &	path
	)

Search a property provider for properties matching a DICOM tag path.

Iterates the provider's property keys, parses each as a DICOM tag path, and returns the entries whose path equals path. Works uniformly for any IPropertyProvider, so callers may pass a BaseData* or a PropertyList* (both inherit IPropertyOwner / IPropertyProvider) without further wrapping.

Parameters

[in]	provider	The property provider to search. nullptr yields an empty map.
[in]	path	The DICOMTagPath to match against property names.

Returns

A map of matching property names to const BaseProperty smart pointers.

See also

DICOMTagPathToPropertyRegEx, GetFirstDICOMValueAsString

GetRadiopharmaceuticalInfos()

std::vector<RadiopharmaceuticalInfo> MITKPET_EXPORT mitk::GetRadiopharmaceuticalInfos	(	const mitk::IPropertyProvider *	provider,
		DICOMReadPolicy	policy = DICOMReadPolicy::Lenient
	)

Read the Radiopharmaceutical Information Sequence as paired-by-item info.

Enumerates the items of the Radiopharmaceutical Information Sequence (0054,0016) by their concrete sequence-item index, and assembles one RadiopharmaceuticalInfo per item. Within each item, the half-life (0018,1075), total dose (0018,1074), and radionuclide code meaning (0054,0300)[*](0008,0104) are read and bundled into the same struct.

Index pairing is enforced: the i-th element of the returned vector corresponds to the i-th item of the source sequence; fields missing from an item come back as NaN / empty without affecting other items.

Radionuclide Total Dose values strictly between 0 and 1e4 are interpreted as the IBSI-SUV benchmark recommends: in DICOMReadPolicy::Lenient the value is reinterpreted as MBq and converted to Bq (factor 1e6) with a MITK_WARN announcing the conversion. In DICOMReadPolicy::Strict the conversion is refused and an ImplausibleRadionuclideDoseException is raised. Other fields (half-life, name) are read verbatim regardless of policy.

Parameters

[in]	provider	Source of DICOM properties; typically the BaseData of a PET image.
[in]	policy	Policy for handling values that the IBSI-SUV benchmark recommends adapting. Defaults to DICOMReadPolicy::Lenient (apply with WARN).

Returns

A vector of RadiopharmaceuticalInfo, ordered by sequence-item index. Empty if no Radiopharmaceutical Information Sequence is present or if provider is nullptr.

Exceptions

ImplausibleRadionuclideDoseException

if policy is DICOMReadPolicy::Strict and an item's (0018,1074) value is strictly between 0 and 1e4.

Remarks

Multi-tracer datasets are surfaced honestly (more than one entry). Callers that only support one tracer should check result.size() and react accordingly.

GetRelevantRegKernelOfNode()

MITKMATCHPOINTREGISTRATION_EXPORT const map::core::RegistrationKernelBase<3,3>* mitk::GetRelevantRegKernelOfNode

(

const mitk::DataNode *

regNode

)

Get the relevant registration kernel for visualization.

The kernel is determined by the direction property of the node.

Parameters

[in]

regNode

The data node containing the registration.

Returns

Pointer to the relevant kernel, or nullptr if the data node is not valid, contains no registration, or has no direction property.

GetRestApiDocumentationUrl()

MITKRESTAPI_EXPORT std::string mitk::GetRestApiDocumentationUrl	(	int	major,
		int	minor,
		int	patch
	)

Build the public docs.mitk.org URL of the REST API specification for a given MITK version.

Released builds publish under /<major>.<minor>/ with the minor zero-padded to two digits (e.g. /2026.06/); development builds publish under /nightly/. A patch level of 99 is MITK's development-build sentinel (the top-level build appends the git revision to the version string in that case), so patch == 99 selects the nightly path. Pass the MITK_VERSION_MAJOR / MINOR / PATCH macros from mitkVersion.h at the call site; taking them as parameters keeps the mapping rule unit-testable for release versions, which a dev build can never exercise.

GetRotation()

template<class TMatrixType >

void mitk::GetRotation	(	const mitk::BaseGeometry *	geometry,
		TMatrixType &	itkmatrix
	)

Extract the rotation matrix from a geometry, removing spacing.

Divides each column of the geometry's IndexToWorld matrix by the corresponding spacing component to obtain a pure rotation matrix.

Template Parameters

TMatrixType

The ITK matrix type for the output.

Parameters

geometry	The source geometry from which to extract the rotation.
itkmatrix	The output matrix that receives the rotation.

See also

GetWorldToItkPhysicalTransform

Definition at line 122 of file mitkMatrixConvert.h.

References mitk::BaseGeometry::GetIndexToWorldTransform(), and mitk::BaseGeometry::GetSpacing().

Referenced by GetWorldToItkPhysicalTransform().

GetSegmentationReferenceImagePredicate()

mitk::NodePredicateBase::Pointer MITKMULTILABEL_EXPORT mitk::GetSegmentationReferenceImagePredicate

(

)

Creates a predicate that matches images suitable as reference for a segmentation.

Returns

A NodePredicateBase smart pointer for filtering reference image nodes.

See also

GetMultiLabelSegmentationPredicate

GetShowFavoritesInspector()

MITKQTWIDGETS_EXPORT bool mitk::GetShowFavoritesInspector

(

)

Returns whether the favorites inspector should be shown.

Returns

True if the favorites inspector is configured to be visible.

GetShowHistoryInspector()

MITKQTWIDGETS_EXPORT bool mitk::GetShowHistoryInspector

(

)

Returns whether the history inspector should be shown.

Returns

True if the history inspector is configured to be visible.

GetVisibleDataStorageInspectors()

MITKQTWIDGETS_EXPORT VisibleDataStorageInspectorMapType mitk::GetVisibleDataStorageInspectors

(

)

Retrieves the currently configured visible inspectors from preferences.

Returns

The map of ordered inspector IDs.

GetWorldToItkPhysicalTransform()

template<class TTransformType >

void mitk::GetWorldToItkPhysicalTransform	(	const mitk::BaseGeometry *	geometry,
		TTransformType *	itkTransform
	)

Compute the world-to-ITK-physical-space transform from a geometry.

Extracts the rotation from the geometry (with spacing removed), computes its inverse (transpose), and combines it with the geometry's offset to produce a transform from MITK world coordinates to ITK physical coordinates.

Template Parameters

TTransformType

The ITK transform type (e.g. AffineTransform3D).

Parameters

geometry	The source geometry.
itkTransform	The output transform. If nullptr, the function returns immediately.

See also

GetRotation

TransferVtkMatrixToItkTransform

Definition at line 150 of file mitkMatrixConvert.h.

References mitk::BaseGeometry::GetIndexToWorldTransform(), and GetRotation().

GridIsOutdated()

bool MITKMATCHPOINTREGISTRATION_EXPORT mitk::GridIsOutdated	(	const mitk::DataNode *	regNode,
		const itk::TimeStamp &	reference
	)

Check if grid-relevant node properties are outdated.

Parameters

[in]	regNode	The data node to check.
[in]	reference	The time stamp to compare against.

Returns

True if any grid-relevant property was modified after the reference time stamp.

InterpolateSignalToNewTimeGrid()

MITKMODELFIT_EXPORT ModelBase::ModelResultType mitk::InterpolateSignalToNewTimeGrid	(	const ModelBase::ModelResultType &	inputSignal,
		const ModelBase::TimeGridType &	inputGrid,
		const ModelBase::TimeGridType &	outputGrid
	)

Interpolates a signal to a new time grid.

Precondition

The time grids must be monotonically increasing. Use TimeGridIsMonotonIncreasing() to verify.

IsAnyCESTImage()

MITKCEST_EXPORT bool mitk::IsAnyCESTImage

(

const Image *

cestImage

)

Check whether an image is any type of CEST image (CEST/WASABI or T1).

An image is considered a CEST image if it is either a CEST/WASABI image (has the "CEST.Offsets" property) or a CEST T1 image (has the "CEST.TREC" property).

Parameters

[in]

cestImage

Pointer to the image to check. May be nullptr.

Returns

True if the image is any type of CEST image, false otherwise (including nullptr).

See also

IsCESTorWasabiImage, IsCESTT1Image, CESTImageNormalizationFilter

IsBackendEnabled()

bool MITKLOG_EXPORT mitk::IsBackendEnabled

(

LogBackendBase::OutputType

type

)

Check whether backends of the given output type are enabled.

Parameters

[in]

type

The output type to query.

Returns

true if backends of this type are enabled (i.e. will receive messages), false if they have been disabled via DisableBackends().

See also

EnableBackends(), DisableBackends()

IsCESTorWasabiImage()

MITKCEST_EXPORT bool mitk::IsCESTorWasabiImage

(

const Image *

cestImage

)

Check whether an image is a CEST or WASABI image.

Detection is based on the presence of the "CEST.Offsets" property on the image. This property is typically set by the CustomTagParser when loading DICOM data from a CEST or WASABI sequence.

Parameters

[in]

cestImage

Pointer to the image to check. May be nullptr.

Returns

True if the image has CEST offset information, false otherwise (including nullptr).

See also

IsAnyCESTImage, IsCESTT1Image, CustomTagParser

IsCESTT1Image()

MITKCEST_EXPORT bool mitk::IsCESTT1Image

(

const Image *

cestImage

)

Check whether an image is a CEST T1 image.

Detection is based on the presence of the "CEST.TREC" property on the image. This property is typically set by the CustomTagParser when loading DICOM data from a T1 recovery sequence used for CEST analysis.

Parameters

[in]

cestImage

Pointer to the image to check. May be nullptr.

Returns

True if the image has CEST T1 recovery time information, false otherwise (including nullptr).

See also

IsAnyCESTImage, IsCESTorWasabiImage, CustomTagParser

IsNotNormalizedCESTImage()

MITKCEST_EXPORT bool mitk::IsNotNormalizedCESTImage

(

const Image *

cestImage

)

Check whether a CEST image still contains un-normalized M0 timesteps.

The function checks the "CEST.Offsets" property of the image and determines whether any of the offsets indicate an M0 normalization image (absolute value > 299). If such offsets exist, the image is considered not yet normalized.

Parameters

[in]

cestImage

Pointer to the CEST image to check.

Returns

True if the image contains at least one M0 offset (i.e., is not normalized), false if all offsets are within the [-299, 299] range.

Exceptions

mitk::Exception

if the image has no "CEST.Offsets" property or if the number of offsets does not match the number of timesteps.

See also

CESTImageNormalizationFilter, ExtractCESTOffset

IsSubGeometry() [1/2]

MITKCORE_EXPORT bool mitk::IsSubGeometry	(	const mitk::BaseGeometry &	testGeo,
		const mitk::BaseGeometry &	referenceGeo,
		ScalarType	coordinateEps,
		ScalarType	directionEps,
		bool	verbose = false
	)

A function checks if a test geometry is a sub geometry of a given reference geometry.

Sub geometry means that both geometries have the same voxel grid (same spacing, same axes, origin is on voxel grid), but the bounding box of the checked geometry is contained or equal to the bounding box of the reference geometry.
By this definition equal geometries are always sub geometries of each other.

The function checks the spacing, origin, axis vectors, extents, the matrix of the IndexToWorldTransform (elementwise), the bounding (elementwise) and the ImageGeometry flag.

The parameter eps is a tolerance value for all methods which are internally used for comparison.

Parameters

testGeo	Geometry that should be checked if it is a sub geometry of referenceGeo.
referenceGeo	Geometry that should contain testedGeometry as sub geometry.
coordinateEps	Tolerance for comparison of all spatial aspects (spacing, origin and grid alignment). You can use mitk::eps in most cases.
directionEps	Tolerance for comparison of all directional aspects (axis). You can use mitk::eps in most cases.
verbose	Flag indicating if the user wants detailed console output or not.

Returns

True, if all comparisons are true. False otherwise.

IsSubGeometry() [2/2]

MITKCORE_EXPORT bool mitk::IsSubGeometry	(	const mitk::BaseGeometry &	testGeo,
		const mitk::BaseGeometry &	referenceGeo,
		ScalarType	eps = mitk::eps,
		bool	verbose = false
	)

A function checks if a test geometry is a sub geometry of a given reference geometry.

This is a overloaded version that uses a single tolerance for spatial and directional aspects. For more details, see the other overloaded version.

Parameters

testGeo	Geometry that should be checked if it is a sub geometry of referenceGeo.
referenceGeo	Geometry that should contain testedGeometry as sub geometry.
eps	Tolarence for comparison (both spatial and directional). You can use mitk::eps in most cases.
verbose	Flag indicating if the user wants detailed console output or not.

Returns

True, if all comparison are true. False otherwise.

itkEventMacroDeclaration() [1/48]

mitk::itkEventMacroDeclaration	(	AffineInteractionEvent	,
		itk::AnyEvent
	)

Event fired on any affine interaction (translate, rotate, scale).

itkEventMacroDeclaration() [2/48]

mitk::itkEventMacroDeclaration	(	BoundingShapeInteractionEvent	,
		itk::AnyEvent
	)

itkEventMacroDeclaration() [3/48]

mitk::itkEventMacroDeclaration	(	ContextMenuPlanarFigureEvent	,
		PlanarFigureEvent
	)

itkEventMacroDeclaration() [4/48]

mitk::itkEventMacroDeclaration	(	ContourModelAddEvent	,
		ContourModelSizeChangeEvent
	)

itkEventMacroDeclaration() [5/48]

mitk::itkEventMacroDeclaration	(	ContourModelClosedEvent	,
		ContourModelEvent
	)

itkEventMacroDeclaration() [6/48]

mitk::itkEventMacroDeclaration	(	ContourModelEvent	,
		itk::AnyEvent
	)

itkEventMacroDeclaration() [7/48]

mitk::itkEventMacroDeclaration	(	ContourModelExpandTimeBoundsEvent	,
		ContourModelEvent
	)

itkEventMacroDeclaration() [8/48]

mitk::itkEventMacroDeclaration	(	ContourModelRemoveEvent	,
		ContourModelSizeChangeEvent
	)

itkEventMacroDeclaration() [9/48]

mitk::itkEventMacroDeclaration	(	ContourModelShiftEvent	,
		ContourModelEvent
	)

itkEventMacroDeclaration() [10/48]

mitk::itkEventMacroDeclaration	(	ContourModelSizeChangeEvent	,
		ContourModelEvent
	)

itkEventMacroDeclaration() [11/48]

mitk::itkEventMacroDeclaration	(	DataInteractorEvent	,
		itk::AnyEvent
	)

itkEventMacroDeclaration() [12/48]

mitk::itkEventMacroDeclaration	(	EndHoverPlanarFigureEvent	,
		PlanarFigureEvent
	)

itkEventMacroDeclaration() [13/48]

mitk::itkEventMacroDeclaration	(	EndInteractionPlanarFigureEvent	,
		PlanarFigureEvent
	)

itkEventMacroDeclaration() [14/48]

mitk::itkEventMacroDeclaration	(	EndPlacementPlanarFigureEvent	,
		PlanarFigureEvent
	)

itkEventMacroDeclaration() [15/48]

mitk::itkEventMacroDeclaration	(	FocusChangedEvent	,
		itk::AnyEvent
	)

itkEventMacroDeclaration() [16/48]

mitk::itkEventMacroDeclaration	(	InteractionSchemeChangedEvent	,
		itk::AnyEvent
	)

Can be observed by GUI class to update button states when type is changed programmatically.

itkEventMacroDeclaration() [17/48]

mitk::itkEventMacroDeclaration	(	InteractorChangedEvent	,
		itk::AnyEvent
	)

Definition of an itk::Event that is invoked when a DataInteractor is set on this DataNode.

itkEventMacroDeclaration() [18/48]

mitk::itkEventMacroDeclaration	(	PlanarFigureEvent	,
		itk::AnyEvent
	)

itkEventMacroDeclaration() [19/48]

mitk::itkEventMacroDeclaration	(	PointMovedPlanarFigureEvent	,
		PlanarFigureEvent
	)

itkEventMacroDeclaration() [20/48]

mitk::itkEventMacroDeclaration	(	PointSetAddEvent	,
		PointSetSizeChangeEvent
	)

itkEventMacroDeclaration() [21/48]

mitk::itkEventMacroDeclaration	(	PointSetEvent	,
		itk::AnyEvent
	)

itkEventMacroDeclaration() [22/48]

mitk::itkEventMacroDeclaration	(	PointSetExtendTimeRangeEvent	,
		PointSetEvent
	)

itkEventMacroDeclaration() [23/48]

mitk::itkEventMacroDeclaration	(	PointSetMoveEvent	,
		PointSetEvent
	)

itkEventMacroDeclaration() [24/48]

mitk::itkEventMacroDeclaration	(	PointSetRemoveEvent	,
		PointSetSizeChangeEvent
	)

itkEventMacroDeclaration() [25/48]

mitk::itkEventMacroDeclaration	(	PointSetSizeChangeEvent	,
		PointSetEvent
	)

itkEventMacroDeclaration() [26/48]

mitk::itkEventMacroDeclaration	(	RedoEmptyEvent	,
		UndoStackEvent
	)

Redo stack became empty.

itkEventMacroDeclaration() [27/48]

mitk::itkEventMacroDeclaration	(	RedoFullEvent	,
		UndoStackEvent
	)

Redo stack is full.

itkEventMacroDeclaration() [28/48]

mitk::itkEventMacroDeclaration	(	RedoNotEmptyEvent	,
		UndoStackEvent
	)

Redo stack is no longer empty.

itkEventMacroDeclaration() [29/48]

mitk::itkEventMacroDeclaration	(	RegistrationRotationEvent	,
		itk::AnyEvent
	)

Event carrying a rotation delta (axis as Vector3D and angle in degrees).

itkEventMacroDeclaration() [30/48]

mitk::itkEventMacroDeclaration	(	RegistrationSelectPositionEvent	,
		itk::AnyEvent
	)

Event fired when the user clicks without a modifier to select a navigator position.

itkEventMacroDeclaration() [31/48]

mitk::itkEventMacroDeclaration	(	RegistrationTranslationEvent	,
		itk::AnyEvent
	)

Event carrying a translation delta (Vector3D).

itkEventMacroDeclaration() [32/48]

mitk::itkEventMacroDeclaration	(	RendererResetEvent	,
		itk::AnyEvent
	)

itkEventMacroDeclaration() [33/48]

mitk::itkEventMacroDeclaration	(	RenderingManagerEvent	,
		itk::AnyEvent
	)

itkEventMacroDeclaration() [34/48]

mitk::itkEventMacroDeclaration	(	RenderingManagerViewsInitializedEvent	,
		RenderingManagerEvent
	)

itkEventMacroDeclaration() [35/48]

mitk::itkEventMacroDeclaration	(	ResultReady	,
		DataInteractorEvent
	)

Triggered when result is stored in mitk::DataNode

itkEventMacroDeclaration() [36/48]

mitk::itkEventMacroDeclaration	(	RotateEvent	,
		AffineInteractionEvent
	)

Event fired when a rotation operation occurs.

itkEventMacroDeclaration() [37/48]

mitk::itkEventMacroDeclaration	(	ScaleEvent	,
		AffineInteractionEvent
	)

Event fired when a scale operation occurs.

itkEventMacroDeclaration() [38/48]

mitk::itkEventMacroDeclaration	(	SelectPlanarFigureEvent	,
		PlanarFigureEvent
	)

itkEventMacroDeclaration() [39/48]

mitk::itkEventMacroDeclaration	(	StartHoverPlanarFigureEvent	,
		PlanarFigureEvent
	)

itkEventMacroDeclaration() [40/48]

mitk::itkEventMacroDeclaration	(	StartInteraction	,
		DataInteractorEvent
	)

Triggered when interaction is started

itkEventMacroDeclaration() [41/48]

mitk::itkEventMacroDeclaration	(	StartInteractionPlanarFigureEvent	,
		PlanarFigureEvent
	)

itkEventMacroDeclaration() [42/48]

mitk::itkEventMacroDeclaration	(	StartPlacementPlanarFigureEvent	,
		PlanarFigureEvent
	)

itkEventMacroDeclaration() [43/48]

mitk::itkEventMacroDeclaration	(	ToolEvent	,
		itk::ModifiedEvent
	)

Basic tool event without any parameters Can simply be inherited using the itkEventMacro, e.g.

namespace mitk
{
 
class MyTool : public Tool
{
  public:
 
    itkEventMacro(MySpecialEvent, ToolEvent);
 
  [...]
 
  protected:
 
  // Invoke your event like this
  void YourExampleMethod()
  {
    InvokeEvent( MySpecialEvent() );
  }
};
 
}

itkEventMacroDeclaration() [44/48]

mitk::itkEventMacroDeclaration	(	TranslateEvent	,
		AffineInteractionEvent
	)

Event fired when a translation operation occurs.

itkEventMacroDeclaration() [45/48]

mitk::itkEventMacroDeclaration	(	UndoEmptyEvent	,
		UndoStackEvent
	)

Undo stack became empty.

itkEventMacroDeclaration() [46/48]

mitk::itkEventMacroDeclaration	(	UndoFullEvent	,
		UndoStackEvent
	)

Additional events for signaling that a stack has reached its limit.

Undo stack is full.

itkEventMacroDeclaration() [47/48]

mitk::itkEventMacroDeclaration	(	UndoNotEmptyEvent	,
		UndoStackEvent
	)

Undo stack is no longer empty.

itkEventMacroDeclaration() [48/48]

mitk::itkEventMacroDeclaration	(	UndoStackEvent	,
		itk::ModifiedEvent
	)

ITK events to notify listening GUI elements when the undo or redo stack is empty (disable button) or when there are items in the stack (enable button).

lexical_cast()

template<typename Target >

Target mitk::lexical_cast ( const std::string &  arg )

inline

Convert a string to a numeric target type with an std::istringstream fallback.

First attempts conversion via boost::conversion::detail::try_lexical_convert. If that fails (e.g. for very small floating-point values on certain compilers), falls back to parsing via std::istringstream.

Template Parameters

Target

The numeric type to convert to (e.g. float, double).

Parameters

arg	The string to convert.

Returns

The converted value of type Target.

Exceptions

boost::bad_lexical_cast

If neither conversion path succeeds.

Definition at line 46 of file mitkLexicalCast.h.

MakeColor()

Color mitk::MakeColor ( float  r, float  g, float  b  )

inline

Convenience function to create a Color from individual RGB components.

Parameters

[in]	r	Red component (0.0f to 1.0f).
[in]	g	Green component (0.0f to 1.0f).
[in]	b	Blue component (0.0f to 1.0f).

Returns

A Color initialized with the given RGB values.

Definition at line 40 of file mitkColorProperty.h.

MakePixelType() [1/7]

template<typename ComponentT , typename PixelT , std::size_t numOfComponents>

PixelType mitk::MakePixelType

(

)

Create a PixelType with a compile-time number of components.

Template Parameters

ComponentT	The C++ scalar component type.
PixelT	The pixel type.
numOfComponents	Compile-time number of components.

Returns

The constructed PixelType.

Definition at line 274 of file mitkPixelType.h.

MakePixelType() [2/7]

template<typename ItkImageType >

PixelType mitk::MakePixelType

(

)

Create a MITK PixelType from an ITK image type with compile-time component count.

Create a PixelType with a compile-time number of components.

The number of components is deduced from the ITK pixel type at compile time. For images where the component count is determined at runtime (e.g. itk::VectorImage), use MakePixelType<ItkImageType>(std::size_t) instead.

Template Parameters

ItkImageType

The ITK image type.

Returns

The constructed PixelType.

Exceptions

mitk::Exception

If the pixel type has a variable length (e.g. VectorImage).

Definition at line 357 of file mitkPixelType.h.

References mitkThrow.

MakePixelType() [3/7]

PixelType mitk::MakePixelType ( const itk::ImageIOBase *  imageIO )

inline

Create a MITK PixelType from an itk::ImageIOBase object.

Extracts component type, pixel type, sizes, and names from the I/O object.

Parameters

[in]

imageIO

The ITK ImageIOBase instance to query.

Returns

The constructed PixelType.

Definition at line 383 of file mitkPixelType.h.

MakePixelType() [4/7]

PixelType mitk::MakePixelType	(	const pybind11::object &	dtype,
		size_t	components = 1
	)

MakePixelType() [5/7]

template<typename ComponentT , typename PixelT >

PixelType mitk::MakePixelType

(

std::size_t

numOfComponents

)

Create a PixelType from explicit component and pixel type parameters.

Create a MITK PixelType from an ITK pixel type and image dimension.

Template Parameters

ComponentT	The C++ scalar component type (e.g. float, short).
PixelT	The pixel type (e.g. itk::RGBPixel<float>).

Parameters

[in]

numOfComponents

The number of components per pixel.

Returns

The constructed PixelType.

Convenience overload that constructs the ITK image type from the pixel type and dimension, then delegates to MakePixelType<ItkImageType>(std::size_t).

Template Parameters

TPixelType	The ITK pixel type (e.g. itk::RGBPixel<unsigned char>).
VImageDimension	The image dimension (e.g. 2 or 3).

Returns

The constructed PixelType.

Definition at line 255 of file mitkPixelType.h.

MakePixelType() [6/7]

template<typename ItkImageType >

PixelType mitk::MakePixelType

(

std::size_t

numOfComponents

)

Create a MITK PixelType from an ITK image type with a runtime component count.

Create a PixelType from explicit component and pixel type parameters.

Template Parameters

ItkImageType

The ITK image type (e.g. itk::Image<float, 3>).

Parameters

[in]

numOfComponents

The number of components per pixel.

Returns

The constructed PixelType.

Definition at line 307 of file mitkPixelType.h.

MakePixelType() [7/7]

MITKCORE_EXPORT mitk::PixelType mitk::MakePixelType

(

vtkImageData *

vtkimagedata

)

Deduce and create a PixelType from a vtkImageData object.

Maps the VTK scalar type to the corresponding MITK PixelType.

Parameters

[in]

vtkimagedata

The VTK image whose scalar type is used.

Returns

The corresponding mitk::PixelType.

Exceptions

mitk::Exception

If the VTK scalar type is not supported.

See also

MakePixelType, MakeScalarPixelType

Referenced by mitk::ImagePixelAccessor< TPixel, VDimension >::CheckData().

MakeRenderingManagerInterface()

MITK_GUI_COMMON_PLUGIN IRenderingManager* mitk::MakeRenderingManagerInterface

(

RenderingManager::Pointer

manager

)

Create a IRenderManager interface for a given RenderingManager. Ownership of the returned pointer is transferred to the caller of this function.

Parameters

manager

The RenderingManager instance for which to create a interface.

Returns

A pointer to the interface object. The caller is responsible for deleting the pointer.

MakeScalarPixelType()

template<typename T >

PixelType mitk::MakeScalarPixelType

(

)

Create a scalar (single-component) PixelType from a C++ type.

Convenience wrapper equivalent to MakePixelType<T, T, 1>().

Usage example:

mitk::PixelType pt = mitk::MakeScalarPixelType<short>();

Template Parameters

T	The C++ scalar type (e.g. short, float, unsigned char).

Returns

A PixelType representing a single-component pixel of type T.

Definition at line 407 of file mitkPixelType.h.

MakeSUVNormalizationStrategy()

std::unique_ptr<SUVNormalizationStrategy> MITKPET_EXPORT mitk::MakeSUVNormalizationStrategy

(

SUVVariant

variant

)

Construct the SUV normalization strategy for the given variant.

Parameters

[in]

variant

The SUV variant the strategy should implement.

Returns

A unique-owned strategy instance.

mapEventMacro() [1/2]

mitk::mapEventMacro	(	FrameMappingEvent	,
		::map::events::TaskBatchEvent	,
		MITKMATCHPOINTREGISTRATION_EXPORT
	)

mapEventMacro() [2/2]

mitk::mapEventMacro	(	FrameRegistrationEvent	,
		::map::events::TaskBatchEvent	,
		MITKMATCHPOINTREGISTRATION_EXPORT
	)

MatrixEqualElementWise() [1/2]

template<typename TCoordRep , unsigned int NRows, unsigned int NCols>

bool mitk::MatrixEqualElementWise ( const itk::Matrix< TCoordRep, NRows, NCols > &  matrix1, const itk::Matrix< TCoordRep, NRows, NCols > &  matrix2, mitk::ScalarType  epsilon = mitk::eps  )

inline

Check for element-wise matrix equality with a user-defined accuracy.

Overload for itk::Matrix types.

Parameters

[in]	matrix1	First itk matrix.
[in]	matrix2	Second itk matrix.
[in]	epsilon	User-defined accuracy bounds.

Returns

True if all element-wise differences are below epsilon.

Definition at line 191 of file mitkMatrix.h.

References MatrixEqualElementWise().

MatrixEqualElementWise() [2/2]

template<typename TCoordRep , unsigned int NRows, unsigned int NCols>

bool mitk::MatrixEqualElementWise ( const vnl_matrix_fixed< TCoordRep, NRows, NCols > &  matrix1, const vnl_matrix_fixed< TCoordRep, NRows, NCols > &  matrix2, mitk::ScalarType  epsilon = mitk::eps  )

inline

Check for element-wise matrix equality with a user-defined accuracy.

Parameters

[in]	matrix1	First vnl matrix.
[in]	matrix2	Second vnl matrix.
[in]	epsilon	User-defined accuracy bounds.

Returns

True if all element-wise differences are below epsilon.

Definition at line 155 of file mitkMatrix.h.

References DifferenceBiggerOrEqualEps().

Referenced by MatrixEqualElementWise().

MatrixEqualRMS() [1/2]

template<typename TCoordRep , unsigned int NRows, unsigned int NCols>

bool mitk::MatrixEqualRMS ( const itk::Matrix< TCoordRep, NRows, NCols > &  matrix1, const itk::Matrix< TCoordRep, NRows, NCols > &  matrix2, mitk::ScalarType  epsilon = mitk::eps  )

inline

Check for matrix equality using root mean squared error (RMS) of all elements.

Overload for itk::Matrix types.

Parameters

[in]	matrix1	First itk matrix.
[in]	matrix2	Second itk matrix.
[in]	epsilon	User-defined accuracy bounds.

Returns

True if the RMS of element differences is below epsilon.

Definition at line 139 of file mitkMatrix.h.

References MatrixEqualRMS().

MatrixEqualRMS() [2/2]

template<typename TCoordRep , unsigned int NRows, unsigned int NCols>

bool mitk::MatrixEqualRMS ( const vnl_matrix_fixed< TCoordRep, NRows, NCols > &  matrix1, const vnl_matrix_fixed< TCoordRep, NRows, NCols > &  matrix2, mitk::ScalarType  epsilon = mitk::eps  )

inline

Check for matrix equality using root mean squared error (RMS) of all elements.

Parameters

[in]	matrix1	First vnl matrix.
[in]	matrix2	Second vnl matrix.
[in]	epsilon	User-defined accuracy bounds.

Returns

True if the RMS of element differences is below epsilon.

Definition at line 106 of file mitkMatrix.h.

Referenced by MatrixEqualRMS().

mitkDeclareGenericProperty() [1/16]

mitk::mitkDeclareGenericProperty	(	BoolLookupTableProperty	,
		BoolLookupTable	,
		MITKCORE_EXPORT
	)

mitkDeclareGenericProperty() [2/16]

mitk::mitkDeclareGenericProperty	(	BoolProperty	,
		bool	,
		MITKCORE_EXPORT
	)

mitkDeclareGenericProperty() [3/16]

mitk::mitkDeclareGenericProperty	(	DoubleProperty	,
		double	,
		MITKCORE_EXPORT
	)

mitkDeclareGenericProperty() [4/16]

mitk::mitkDeclareGenericProperty	(	FloatLookupTableProperty	,
		FloatLookupTable	,
		MITKCORE_EXPORT
	)

mitkDeclareGenericProperty() [5/16]

mitk::mitkDeclareGenericProperty	(	FloatProperty	,
		float	,
		MITKCORE_EXPORT
	)

mitkDeclareGenericProperty() [6/16]

mitk::mitkDeclareGenericProperty	(	IntLookupTableProperty	,
		IntLookupTable	,
		MITKCORE_EXPORT
	)

mitkDeclareGenericProperty() [7/16]

mitk::mitkDeclareGenericProperty	(	IntProperty	,
		int	,
		MITKCORE_EXPORT
	)

mitkDeclareGenericProperty() [8/16]

mitk::mitkDeclareGenericProperty	(	Point2dProperty	,
		Point2D	,
		MITKCORE_EXPORT
	)

mitkDeclareGenericProperty() [9/16]

mitk::mitkDeclareGenericProperty	(	Point3dProperty	,
		Point3D	,
		MITKCORE_EXPORT
	)

mitkDeclareGenericProperty() [10/16]

mitk::mitkDeclareGenericProperty	(	Point3iProperty	,
		Point3I	,
		MITKCORE_EXPORT
	)

mitkDeclareGenericProperty() [11/16]

mitk::mitkDeclareGenericProperty	(	Point4dProperty	,
		Point4D	,
		MITKCORE_EXPORT
	)

mitkDeclareGenericProperty() [12/16]

mitk::mitkDeclareGenericProperty	(	ScalarListLookupTableProperty	,
		ScalarListLookupTable	,
		MITKMODELFIT_EXPORT
	)

Property type that holds a ScalarListLookupTable value.

Generated via the mitkDeclareGenericProperty macro, which creates a BaseProperty subclass with value semantics for ScalarListLookupTable.

See also

mitk::ScalarListLookupTable

mitkDeclareGenericProperty() [13/16]

mitk::mitkDeclareGenericProperty	(	StringLookupTableProperty	,
		StringLookupTable	,
		MITKCORE_EXPORT
	)

mitkDeclareGenericProperty() [14/16]

mitk::mitkDeclareGenericProperty	(	UIntProperty	,
		unsigned int	,
		MITKCORE_EXPORT
	)

mitkDeclareGenericProperty() [15/16]

mitk::mitkDeclareGenericProperty	(	UShortProperty	,
		unsigned short	,
		MITKCORE_EXPORT
	)

mitkDeclareGenericProperty() [16/16]

mitk::mitkDeclareGenericProperty	(	Vector3DProperty	,
		Vector3D	,
		MITKCORE_EXPORT
	)

mitkSpecializeGenericLookupTable() [1/4]

mitk::mitkSpecializeGenericLookupTable	(	BoolLookupTable	,
		bool
	)

Specializations of GenericLookupTable for common value types.

This file contains specializations of mitk::GenericLookupTable for bool, float, int, and std::string lookup tables.

Warning

You must call the mitkSpecializeGenericLookupTableOperator macro in mitkLookupTables.cpp for each specialization to add an ostream << operator for that lookup table specialization.

See also

GenericLookupTable

mitkSpecializeGenericLookupTable() [2/4]

mitk::mitkSpecializeGenericLookupTable	(	FloatLookupTable	,
		float
	)

mitkSpecializeGenericLookupTable() [3/4]

mitk::mitkSpecializeGenericLookupTable	(	IntLookupTable	,
		int
	)

mitkSpecializeGenericLookupTable() [4/4]

mitk::mitkSpecializeGenericLookupTable	(	StringLookupTable	,
		std::string
	)

MODEL_FIT_PLOT_INTERPOLATED_SIGNAL_NAME()

MITKMODELFIT_EXPORT const std::string mitk::MODEL_FIT_PLOT_INTERPOLATED_SIGNAL_NAME

(

)

Keyword used in curve collections as key for the interpolated (hires) signal (generated by a model) plot.

MODEL_FIT_PLOT_SAMPLE_NAME()

MITKMODELFIT_EXPORT const std::string mitk::MODEL_FIT_PLOT_SAMPLE_NAME

(

)

Keyword used in curve collections as key for the sample (extracted from an image) plot.

MODEL_FIT_PLOT_SIGNAL_NAME()

MITKMODELFIT_EXPORT const std::string mitk::MODEL_FIT_PLOT_SIGNAL_NAME

(

)

Keyword used in curve collections as key for the signal (generated by a model) plot.

operator!=()

MITKCORE_EXPORT bool mitk::operator!=	(	const InteractionEvent &	a,
		const InteractionEvent &	b
	)

Referenced by us::LDAPProp::operator!=().

operator+()

MITKDICOM_EXPORT DICOMTagPath mitk::operator+	(	const std::string &	pathStr,
		const DICOMTagPath &	right
	)

Concatenates a string with a DICOM tag path (reverse order).

Parameters

[in]	pathStr	String representation of a path.
[in]	right	The DICOMTagPath to append.

Returns

A new DICOMTagPath with the concatenated result.

operator<<() [1/7]

MITKCORE_EXPORT std::ostream& mitk::operator<<	(	std::ostream &	o,
		DataNode::Pointer &	dtn
	)

Stream output operator for DataNode smart pointers.

Writes the class name of the node's data object to the stream, or "empty data" if no data is set.

Parameters

[in,out]	o	The output stream.
[in]	dtn	The DataNode to write.

Returns

The output stream.

operator<<() [2/7]

MITKDICOM_EXPORT std::ostream& mitk::operator<<	(	std::ostream &	os,
		const DICOMTagPath &	path
	)

Stream output operator for DICOMTagPath.

operator<<() [3/7]

MITKCORE_EXPORT std::ostream& mitk::operator<<	(	std::ostream &	os,
		const MimeType &	mimeType
	)

Stream output operator for MimeType.

Parameters

[in,out]	os	The output stream.
[in]	mimeType	The MimeType to print.

Returns

Reference to the output stream.

operator<<() [4/7]

MITKCORE_EXPORT std::ostream& mitk::operator<<	(	std::ostream &	os,
		const mitk::Exception &	e
	)

Stream output operator for mitk::Exception.

Writes the exception description to the given output stream.

Parameters

[in,out]	os	The output stream.
[in]	e	The exception to write.

Returns

Reference to the output stream.

operator<<() [5/7]

MITKCORE_EXPORT std::ostream& mitk::operator<<	(	std::ostream &	os,
		const PropertyKeyPath &	path
	)

Stream output operator for PropertyKeyPath.

Writes the property name representation to the stream.

Parameters

[in,out]	os	The output stream.
[in]	path	The PropertyKeyPath to output.

Returns

The output stream.

operator<<() [6/7]

MITKCORE_EXPORT std::ostream& mitk::operator<<	(	std::ostream &	os,
		const PropertyPersistenceInfo &	info
	)

Stream output operator for PropertyPersistenceInfo.

operator<<() [7/7]

MITKMODELFIT_EXPORT std::ostream& mitk::operator<<	(	std::ostream &	stream,
		const ScalarListLookupTable &	l
	)

Adds the string representation of the given ScalarListLookupTable to the given stream.

Parameters

stream	The stream to which the map's string representation should be added.
l	The map whose string representation should be added to the stream.

Returns

The given stream with the added string representation of the map.

operator==()

MITKCORE_EXPORT bool mitk::operator==	(	const InteractionEvent &	a,
		const InteractionEvent &	b
	)

Implementation of equality for event classes. Equality does not mean an exact copy or pointer equality.

A match is determined by agreement in all attributes that are necessary to describe the event for a state machine transition. E.g. for a mouse event press event, it is important which modifiers are used, which mouse button was used to triggered the event, but the mouse position is irrelevant.

Referenced by berry::ObjectList< T >::operator==().

operator>>()

MITKCORE_EXPORT std::istream& mitk::operator>>	(	std::istream &	i,
		DataNode::Pointer &	dtn
	)

Stream input operator for DataNode smart pointers.

Creates a new empty DataNode and assigns it to dtn.

Parameters

[in,out]	i	The input stream.
[out]	dtn	Receives a newly created DataNode.

Returns

The input stream.

operator|() [1/2]

InteractionEvent::ModifierKeys mitk::operator| ( InteractionEvent::ModifierKeys  a, InteractionEvent::ModifierKeys  b  )

inline

Definition at line 170 of file mitkInteractionEvent.h.

operator|() [2/2]

InteractionEvent::MouseButtons mitk::operator| ( InteractionEvent::MouseButtons  a, InteractionEvent::MouseButtons  b  )

inline

Definition at line 158 of file mitkInteractionEvent.h.

operator|=() [1/2]

InteractionEvent::ModifierKeys& mitk::operator|= ( InteractionEvent::ModifierKeys &  a, InteractionEvent::ModifierKeys &  b  )

inline

Definition at line 175 of file mitkInteractionEvent.h.

operator|=() [2/2]

InteractionEvent::MouseButtons& mitk::operator|= ( InteractionEvent::MouseButtons &  a, InteractionEvent::MouseButtons &  b  )

inline

Definition at line 163 of file mitkInteractionEvent.h.

ParseV2ViewDirection()

MITKRESTAPI_EXPORT AnatomicalPlane mitk::ParseV2ViewDirection

(

const std::string &

s

)

Parse the v2 layout schema's view_direction string.

Exceptions

std::invalid_argument

if s is not one of the four accepted lower-case tokens.

PixelComponentTypeToString()

template<typename T >

std::string mitk::PixelComponentTypeToString

(

)

Return the ITK component type name for the given C++ scalar type.

Template Parameters

T	The C++ scalar type (e.g. float, short).

Returns

A string such as "float", "short", etc.

Definition at line 35 of file mitkPixelType.h.

PixelSpacingInterpretationToString()

std::string mitk::PixelSpacingInterpretationToString

(

const PixelSpacingInterpretation &

value

)

Convert a PixelSpacingInterpretation enum value to a human readable string.

Parameters

[in]

value

The enum value to convert.

Returns

A string representation such as "In Patient", "At Detector", or "Unknown".

PixelTypeToString()

template<typename PixelT >

std::string mitk::PixelTypeToString

(

)

Return the ITK pixel type name for the given pixel type.

The default implementation returns an empty string. Specializations may provide meaningful names for compound pixel types.

Template Parameters

PixelT

The pixel type.

Returns

A string describing the pixel type, or empty for primitive types.

Definition at line 50 of file mitkPixelType.h.

previewModelFitGeneratorResults()

MITKMODELFIT_EXPORT void mitk::previewModelFitGeneratorResults	(	const std::string &	outputPathTemplate,
		mitk::ParameterFitImageGeneratorBase *	generator
	)

Helper function that outputs on the std::cout the result images the generator would produces.

PropertyIsOutdated()

bool MITKMATCHPOINTREGISTRATION_EXPORT mitk::PropertyIsOutdated	(	const mitk::DataNode *	regNode,
		const std::string &	propName,
		const itk::TimeStamp &	reference
	)

Check if a specific property of a node is outdated.

If the property does not exist, the return value indicates whether the node itself is outdated.

Parameters

[in]	regNode	The data node to check.
[in]	propName	The name of the property to check.
[in]	reference	The time stamp to compare against.

Returns

True if the property (or node) was modified after the reference time stamp.

PropertyKeyPathToPersistenceKeyRegEx()

MITKCORE_EXPORT std::string mitk::PropertyKeyPathToPersistenceKeyRegEx

(

const PropertyKeyPath &

tagPath

)

Convert a PropertyKeyPath to a regex string for matching persistence keys.

Similar to PropertyKeyPathToPropertyRegEx() but uses underscores instead of dots as separators. Used by the property persistence service.

Parameters

[in]

tagPath

The PropertyKeyPath to convert.

Returns

A regex string for matching persistence keys.

PropertyKeyPathToPersistenceKeyTemplate()

MITKCORE_EXPORT std::string mitk::PropertyKeyPathToPersistenceKeyTemplate

(

const PropertyKeyPath &

tagPath

)

Convert a PropertyKeyPath to a persistence key template string.

Wildcards are replaced by regex back-references ($1, $2, ...) for use as a key template in PropertyPersistenceInfo. Uses underscores as separators.

Parameters

[in]

tagPath

The PropertyKeyPath to convert.

Returns

A key template string.

PropertyKeyPathToPersistenceNameTemplate()

MITKCORE_EXPORT std::string mitk::PropertyKeyPathToPersistenceNameTemplate

(

const PropertyKeyPath &

tagPath

)

Convert a PropertyKeyPath to a persistence name template string.

Wildcards are replaced by regex back-references ($1, $2, ...) for use as a name template in PropertyPersistenceInfo. Uses dots as separators.

Parameters

[in]

tagPath

The PropertyKeyPath to convert.

Returns

A name template string.

PropertyKeyPathToPropertyName()

MITKCORE_EXPORT std::string mitk::PropertyKeyPathToPropertyName

(

const PropertyKeyPath &

tagPath

)

Convert a PropertyKeyPath to its property name string representation.

Creates a dot-separated property name from the path nodes, using "[n]" for element selections and "[*]" for any selections.

Parameters

[in]

tagPath

The PropertyKeyPath to convert.

Returns

The property name string.

PropertyKeyPathToPropertyRegEx()

MITKCORE_EXPORT std::string mitk::PropertyKeyPathToPropertyRegEx

(

const PropertyKeyPath &

tagPath

)

Convert a PropertyKeyPath to a regex string for matching property keys.

Wildcards in the path are converted to regex capture groups. Used by the property persistence service.

Parameters

[in]

tagPath

The PropertyKeyPath to convert.

Returns

A regex string suitable for std::regex matching of property keys.

PropertyNameToDICOMTagPath()

MITKDICOM_EXPORT DICOMTagPath mitk::PropertyNameToDICOMTagPath

(

const std::string &

propertyName

)

Converts the passed property name into a tag path. If the property name cannot be converted into a valid path, the returned path is empty.

PropertyNameToPropertyKeyPath()

MITKCORE_EXPORT PropertyKeyPath mitk::PropertyNameToPropertyKeyPath

(

const std::string &

propertyName

)

Convert a property name string to a PropertyKeyPath.

Parses the dot-separated property name and creates the corresponding path structure. If the name cannot be parsed, an empty path is returned.

Parameters

[in]

propertyName

The property name string to convert.

Returns

The corresponding PropertyKeyPath, or an empty path if parsing fails.

PutPreferredDataStorageInspector()

MITKQTWIDGETS_EXPORT void mitk::PutPreferredDataStorageInspector

(

const DataStorageInspectorIDType &

id

)

Stores the given inspector ID as the preferred (default) inspector.

Parameters

[in]

id

The inspector ID to set as preferred.

PutShowFavoritesInspector()

MITKQTWIDGETS_EXPORT void mitk::PutShowFavoritesInspector

(

bool

show

)

Persists whether the favorites inspector should be shown.

Parameters

[in]

show

True to show the favorites inspector.

PutShowHistoryInspector()

MITKQTWIDGETS_EXPORT void mitk::PutShowHistoryInspector

(

bool

show

)

Persists whether the history inspector should be shown.

Parameters

[in]

show

True to show the history inspector.

PutVisibleDataStorageInspectors()

MITKQTWIDGETS_EXPORT void mitk::PutVisibleDataStorageInspectors

(

const VisibleDataStorageInspectorMapType &

inspectors

)

Persists the given map of visible inspectors to preferences.

Parameters

[in]

inspectors

The map of ordered inspector IDs.

PyQuote()

MITKPYTHON_EXPORT std::string mitk::PyQuote

(

const std::string &

value

)

Formats a string as a Python single-quoted string literal.

Backslashes and single quotes are escaped so the value round-trips safely when spliced into generated Python source (for example a Windows path like C:\foo\bar, or a user-edited preference). Use this for every untrusted value that ends up in code run through the interpreter, so a stray quote or backslash cannot break the generated Python or inject code.

ReaderImplementationLevelToString()

std::string mitk::ReaderImplementationLevelToString

(

const ReaderImplementationLevel &

enumValue

)

Convert a ReaderImplementationLevel enum value to a human readable string.

Parameters

[in]

enumValue

The enum value to convert.

Returns

A string representation such as "Supported", "PartlySupported", "Implemented", "Unsupported", or "Unknown".

ReadVoxel() [1/2]

MITKMODELFIT_EXPORT ModelTraitsInterface::ParameterValueType mitk::ReadVoxel	(	const mitk::Image *	image,
		const ::itk::Index< 3 > &	index,
		unsigned int	timestep = 0,
		bool	noThrow = true
	)

Helper function that gets the voxel value (as double) of an image (given an image index and a time step). Function is used in different contexts of model fit view.

Parameters

image	The image to read the voxel value from.
index	The 3D image index.
timestep	The time step to read from.
noThrow	If set to false, function will throw exceptions. If set to true, exceptions will be blocked, an MITK_ERROR will be notified and the return is 0.0.

ReadVoxel() [2/2]

MITKMODELFIT_EXPORT ModelTraitsInterface::ParameterValueType mitk::ReadVoxel	(	const mitk::Image *	image,
		const mitk::Point3D &	position,
		unsigned int	timestep = 0,
		bool	noThrow = true
	)

Helper function that gets the voxel value (as double) of an image (given an 3D position and a time step). Function is used in different contexts of model fit view.

Parameters

image	The image to read the voxel value from.
position	The 3D world coordinate position.
timestep	The time step to read from.
noThrow	If set to false, function will throw exceptions. If set to true, exceptions will be blocked, an MITK_ERROR will be notified and the return is 0.0.

RegisterBackend()

void MITKLOG_EXPORT mitk::RegisterBackend

(

LogBackendBase *

backend

)

Register a log backend in the MITK log mechanism.

Once registered, the backend receives all log messages through its ProcessMessage() method (provided its OutputType is enabled). Multiple backends can be registered simultaneously.

If no backend is registered when a message is emitted, a default LogBackendCout is created automatically. This default backend is removed when a second backend is added.

Parameters

[in]

backend

Pointer to the backend to register. The caller retains ownership and must ensure the backend remains valid until UnregisterBackend() is called.

Precondition

backend is not null.

See also

UnregisterBackend(), LogBackendBase

RegisterBoundingShapeObjectFactory()

MITKBOUNDINGSHAPE_EXPORT void mitk::RegisterBoundingShapeObjectFactory

(

)

Register the BoundingShapeObjectFactory with the CoreObjectFactory.

Call this function once during application startup to enable bounding shape rendering. Typically invoked from module activators.

Remesh()

MITKREMESHING_EXPORT Surface::Pointer mitk::Remesh	(	const Surface *	surface,
		TimeStepType	t,
		int	numVertices,
		double	gradation,
		int	subsampling = 10,
		double	edgeSplitting = 0.0,
		int	optimizationLevel = 1,
		bool	forceManifold = false,
		bool	boundaryFixing = false
	)

Remesh a surface and store the result in a new surface.

The ACVD library is used for remeshing which is based on the paper "Approximated Centroidal Voronoi Diagrams for Uniform Polygonal Mesh Coarsening" by S. Valette, and J. M. Chassery. There are a few rules of thumbs regarding the ranges of parameters to gain high quality remeshed surfaces:

• numVertices is exact, however, if boundaryFixing is enabled, additional vertices are generated at boundaries
• Set gradation to zero in case you want polygons of roughly the same size all over the remeshed surface; start with 1 otherwise
• subsampling has direct influence on the quality of the remeshed surface (higher values take more time)
• edgeSplitting is useful for surfaces that contain long and thin triangles but takes a long time
• Leave optimizationLevel set to 1 as greater values result in degenerated polygons
• Irregular shrinking of boundaries during remeshing can be avoided by boundaryFixing, however this results in additional, lower quality polygons at boundaries

Parameters

[in]	surface	Input surface.
[in]	t	Time step of a four-dimensional input surface, zero otherwise.
[in]	numVertices	Desired number of vertices in the remeshed surface, set to zero to keep original vertex count.
[in]	gradation	Influence of surface curvature on polygon size.
[in]	subsampling	Subsample input surface until number of vertices exceeds initial count times this parameter.
[in]	edgeSplitting	Recursively split edges that are longer than the average edge length times this parameter.
[in]	optimizationLevel	Minimize distance between input surface and remeshed surface.
[in]	forceManifold
[in]	boundaryFixing	Keep original surface boundaries by adding additional polygons.

Returns

Returns the remeshed surface or nullptr if input surface is invalid.

SelectImageByTimePoint() [1/2]

MITKCORE_EXPORT Image::ConstPointer mitk::SelectImageByTimePoint	(	const Image *	image,
		TimePointType	timePoint
	)

Convenience helper to extract a single time step from a 4D image by time point.

If a nullptr is passed as image, a nullptr will be returned. If an image without time steps is passed, the image will be returned unaltered. The behavior for invalid time point values is similar to the ImageTimeSelector filter.

Parameters

image	The input image (may be nullptr).
timePoint	The time point to extract.

Returns

The extracted 3D image for the given time point (const version), or nullptr if the time point is invalid.

See also

ImageTimeSelector

SelectImageByTimePoint() [2/2]

MITKCORE_EXPORT Image::Pointer mitk::SelectImageByTimePoint	(	Image *	image,
		TimePointType	timePoint
	)

Non-const version of SelectImageByTimePoint.

Parameters

image	The input image (may be nullptr).
timePoint	The time point to extract.

Returns

The extracted 3D image for the given time point, or nullptr if the time point is invalid.

See also

ImageTimeSelector

SelectImageByTimeStep() [1/2]

MITKCORE_EXPORT Image::ConstPointer mitk::SelectImageByTimeStep	(	const Image *	image,
		unsigned int	timestep
	)

Convenience helper to extract a single time step from a 4D image.

If a nullptr is passed as image, a nullptr will be returned. If an image without time steps is passed, the image will be returned unaltered. The behavior for invalid time step values is similar to the ImageTimeSelector filter.

Parameters

image	The input image (may be nullptr).
timestep	The time step index to extract.

Returns

The extracted 3D image for the given time step (const version).

See also

ImageTimeSelector

SelectImageByTimeStep() [2/2]

MITKCORE_EXPORT Image::Pointer mitk::SelectImageByTimeStep	(	Image *	image,
		unsigned int	timestep
	)

Non-const version of SelectImageByTimeStep.

Parameters

image	The input image (may be nullptr).
timestep	The time step index to extract.

Returns

The extracted 3D image for the given time step.

See also

ImageTimeSelector

SetCESTFrequencyMHz()

void MITKCEST_EXPORT mitk::SetCESTFrequencyMHz	(	IPropertyOwner *	owner,
		double	freqInMHz
	)

Set the CEST frequency on a property owner in MHz.

Converts the value from MHz to Hz (by multiplying with 1e6) and stores it in the "CEST.FREQ" property.

Parameters

[in,out]	owner	Pointer to the property owner on which to set the property. If nullptr, this function does nothing.
[in]	freqInMHz	The CEST frequency value in MHz.

See also

CEST_PROPERTY_NAME_FREQ, GetCESTFrequency

SplitVectorImage()

MITKMULTILABEL_EXPORT std::vector<mitk::Image::Pointer> mitk::SplitVectorImage

(

const Image *

vecImage

)

StitchImages() [1/3]

MITKMATCHPOINTREGISTRATION_EXPORT Image::Pointer mitk::StitchImages	(	std::vector< Image::ConstPointer >	inputs,
		const BaseGeometry *	resultGeometry,
		const double &	paddingValue = 0,
		itk::StitchStrategy	stitchStrategy = itk::StitchStrategy::Mean,
		mitk::ImageMappingInterpolator::Type	interpolatorType = mitk::ImageMappingInterpolator::Linear
	)

Stitches multiple input images using identity transforms. This is an overloaded member function, provided for convenience. It differs from the above function only in what argument(s) it accepts.Convenience version that uses identity registrations for all inputs.

Parameters

[in]	inputs	Vector of input images to stitch.
[in]	resultGeometry	Geometry defining the grid of the output image.
[in]	paddingValue	Value used for uncovered voxels.
[in]	stitchStrategy	Strategy for combining overlapping inputs.
[in]	interpolatorType	Interpolation strategy for resampling.

Returns

Smart pointer to the stitched result image.

StitchImages() [2/3]

MITKMATCHPOINTREGISTRATION_EXPORT Image::Pointer mitk::StitchImages	(	std::vector< Image::ConstPointer >	inputs,
		std::vector< MAPRegistrationWrapper::ConstPointer >	registrations,
		const BaseGeometry *	resultGeometry,
		const double &	paddingValue = 0,
		itk::StitchStrategy	stitchStrategy = itk::StitchStrategy::Mean,
		mitk::ImageMappingInterpolator::Type	interpolatorType = mitk::ImageMappingInterpolator::Linear
	)

Stitches multiple input images using MITK registration wrappers. This is an overloaded member function, provided for convenience. It differs from the above function only in what argument(s) it accepts.

Parameters

[in]	inputs	Vector of input images to stitch.
[in]	registrations	Vector of MITK registration wrappers, one per input image.
[in]	resultGeometry	Geometry defining the grid of the output image.
[in]	paddingValue	Value used for uncovered voxels.
[in]	stitchStrategy	Strategy for combining overlapping inputs.
[in]	interpolatorType	Interpolation strategy for resampling.

Returns

Smart pointer to the stitched result image.

StitchImages() [3/3]

MITKMATCHPOINTREGISTRATION_EXPORT Image::Pointer mitk::StitchImages	(	std::vector< Image::ConstPointer >	inputs,
		std::vector<::map::core::RegistrationBase::ConstPointer >	registrations,
		const BaseGeometry *	resultGeometry,
		const double &	paddingValue = 0,
		itk::StitchStrategy	stitchStrategy = itk::StitchStrategy::Mean,
		mitk::ImageMappingInterpolator::Type	interpolatorType = mitk::ImageMappingInterpolator::Linear
	)

Stitches multiple input images into a single result image using MatchPoint registrations.

Each input image is mapped into the result geometry using its corresponding registration. When multiple inputs contribute to the same output voxel, the stitch strategy determines how values are combined.

Parameters

[in]	inputs	Vector of input images to stitch.
[in]	registrations	Vector of MatchPoint registrations, one per input image (same order).
[in]	resultGeometry	Geometry defining the grid of the output image.
[in]	paddingValue	Value used for voxels not covered by any input image.
[in]	stitchStrategy	Strategy for combining overlapping inputs (Mean or BorderDistance).
[in]	interpolatorType	Interpolation strategy for resampling.

Returns

Smart pointer to the stitched result image.

Precondition

inputs must not be empty and must contain valid instances.

registrations must have the same size as inputs and contain valid instances.

Dimensionality of the registrations must match the inputs.

resultGeometry must be valid.

Note

Currently only 3D images are supported.

storeModelFitGeneratorResults()

MITKMODELFIT_EXPORT void mitk::storeModelFitGeneratorResults	(	const std::string &	outputPathTemplate,
		mitk::ParameterFitImageGeneratorBase *	generator,
		const mitk::modelFit::ModelFitInfo *	fitSession
	)

Helper function that stores all results of the passed generator according to the passed outputPathTemplate. For further information regarding the output file path, please see storeModelFitResultImage().

storeModelFitResultImage()

MITKMODELFIT_EXPORT void mitk::storeModelFitResultImage	(	const std::string &	outputPathTemplate,
		const std::string &	parameterName,
		mitk::Image *	image,
		mitk::modelFit::Parameter::Type	nodeType,
		const mitk::modelFit::ModelFitInfo *	modelFitInfo
	)

Helper function that takes the given image, sets its properties according to the fit session and stores it. The output path will be determined given the outputPathTemplate (which determines the directory, the basic file name and the file formate). The output file name is: <basic file name>_<parameterName>.<extension indicated by outputPathTemplate>

storeParameterResultImage()

MITKMODELFIT_EXPORT void mitk::storeParameterResultImage	(	const std::string &	outputPathTemplate,
		const std::string &	parameterName,
		mitk::Image *	image,
		mitk::modelFit::Parameter::Type	parameterType = mitk::modelFit::Parameter::ParameterType
	)

Helper function that takes the given image and stores it based on a template path. The real output path will be determined given the outputPathTemplate (which determines the directory, the basic file name and the file formate). The output file name is: <basic file name>_<parameterName>.<extension indicated by outputPathTemplate>

StringsToNumbers()

template<typename NUMBER_TYPE , typename STRING_ARRAY , typename DOUBLE_ARRAY >

void mitk::StringsToNumbers	(	unsigned int	count,
		const STRING_ARRAY &	strings,
		DOUBLE_ARRAY &	numbers
	)

Converts an array of string representations to an array of numeric values.

Uses boost::lexical_cast to convert count elements from the strings container into the numbers container. Both containers must support operator[] access. This is commonly used to parse serialized numeric values (e.g., from XML attributes) back into Point3D, Vector3D, or similar fixed-size numeric containers.

Template Parameters

NUMBER_TYPE	The target numeric type (e.g., double, float, int).
STRING_ARRAY	A container type supporting operator[] that holds string values.
DOUBLE_ARRAY	A container type supporting operator[] that holds numeric values.

Parameters

[in]	count	The number of elements to convert from strings to numbers.
[in]	strings	A container holding at least count string values starting at index 0.
[out]	numbers	A container with space for at least count numeric values starting at index 0.

Warning

This method has absolutely no means of verifying that your containers are big enough. It is the caller's responsibility to make sure that both the input and the output container can be addressed via [0] through [count-1].

Exceptions

boost::bad_lexical_cast

Propagated when an unparsable string is encountered.

std::vector<std::string> serialized_double_values = ... read from some file ...
mitk::Point3D point;
try
{
  mitk::StringsToNumbers<double>(3, serialized_double_values, point);
}
catch (boost::bad_lexical_cast& e)
{
  MITK_ERROR << "Bad cast from string to double: " << e.what();
}

See also

mitk::BasePropertySerializer

Definition at line 58 of file mitkStringsToNumbers.h.

swap() [1/4]

void mitk::swap	(	CustomMimeType &	l,
		CustomMimeType &	r
	)

Swap two CustomMimeType objects.

Parameters

[in,out]	l	First CustomMimeType.
[in,out]	r	Second CustomMimeType.

Referenced by itk::Functor::NeighborhoodCooccurenceMatrix< TNeighborhoodType, TPixelOutputType >::operator()(), mitk::MessageBase< AbstractDelegate >::operator=(), and us::Any::Swap().

swap() [2/4]

void mitk::swap	(	FileReaderSelector &	fws1,
		FileReaderSelector &	fws2
	)

Swap two FileReaderSelector objects.

Parameters

[in,out]	fws1	First selector.
[in,out]	fws2	Second selector.

swap() [3/4]

void mitk::swap	(	FileWriterSelector &	fws1,
		FileWriterSelector &	fws2
	)

Swap two FileWriterSelector objects.

Parameters

[in,out]	fws1	First selector.
[in,out]	fws2	Second selector.

swap() [4/4]

MITKCORE_EXPORT void mitk::swap	(	MimeType &	m1,
		MimeType &	m2
	)

Swap two MimeType objects.

Parameters

[in,out]	m1	First MimeType.
[in,out]	m2	Second MimeType.

TimeGridIsMonotonIncreasing()

MITKMODELFIT_EXPORT bool mitk::TimeGridIsMonotonIncreasing

(

const ModelBase::TimeGridType

timeGrid

)

Checks if the time grid is monotonically increasing (timeGrid[n] <= timeGrid[n+1]).

This is a precondition for the InterpolateSignalToNewTimeGrid helper function.

to_json() [1/12]

template<typename BasicJsonType >

void mitk::to_json ( BasicJsonType &  j, const IOVolumeSplitReason::ReasonType &  e  )

inline

Definition at line 162 of file mitkIOVolumeSplitReason.h.

References mitk::IOVolumeSplitReason::TypeToString().

to_json() [2/12]

template<typename T >

void mitk::to_json	(	nlohmann::json &	j,
		const GenericLookupTable< T > &	t
	)

Serialize a GenericLookupTable to JSON.

Definition at line 131 of file mitkGenericLookupTable.h.

References mitk::GenericLookupTable< T >::GetLookupTable().

to_json() [3/12]

MITKCORE_EXPORT void mitk::to_json	(	nlohmann::json &	j,
		const LevelWindow &	lw
	)

to_json() [4/12]

template<class TCoordRep , unsigned int NPointDimension>

void mitk::to_json	(	nlohmann::json &	j,
		const Point< TCoordRep, NPointDimension > &	p
	)

Serialize a mitk::Point to a JSON array.

Definition at line 118 of file mitkPoint.h.

to_json() [5/12]

MITKROI_EXPORT void mitk::to_json	(	nlohmann::json &	j,
		const ROI::Element &	roi
	)

Serialize a ROI::Element to JSON (nlohmann::json ADL customization point).

Parameters

[out]	j	The JSON object to populate.
[in]	roi	The ROI element to serialize.

See also

from_json

to_json() [6/12]

MITKMODELFIT_EXPORT void mitk::to_json	(	nlohmann::json &	j,
		const ScalarListLookupTable &	lut
	)

to_json() [7/12]

template<class TCoordRep , unsigned int NVectorDimension>

void mitk::to_json	(	nlohmann::json &	j,
		const Vector< TCoordRep, NVectorDimension > &	v
	)

Serialize a mitk::Vector to a JSON array.

Definition at line 153 of file mitkVector.h.

to_json() [8/12]

MITKCORE_EXPORT void mitk::to_json	(	nlohmann::json &	j,
		IOVolumeSplitReason::ConstPointer	reason
	)

Serialize an IOVolumeSplitReason (const) to a JSON object.

Parameters

[out]	j	The JSON object to write to.
[in]	reason	The split reason to serialize.

to_json() [9/12]

MITKCORE_EXPORT void mitk::to_json	(	nlohmann::json &	j,
		IOVolumeSplitReason::Pointer	reason
	)

Serialize an IOVolumeSplitReason to a JSON object.

Parameters

[out]	j	The JSON object to write to.
[in]	reason	The split reason to serialize.

to_json() [10/12]

MITKPYTHONINSTALLER_EXPORT void mitk::to_json	(	nlohmann::ordered_json &	j,
		const PipInstallGroup &	g
	)

to_json() [11/12]

MITKPYTHONINSTALLER_EXPORT void mitk::to_json	(	nlohmann::ordered_json &	j,
		const PipInstallSpec &	s
	)

to_json() [12/12]

MITKPYTHONINSTALLER_EXPORT void mitk::to_json	(	nlohmann::ordered_json &	j,
		const PostInstallStep &	s
	)

ToArray() [1/2]

template<typename ArrayType , typename TCoordRep , unsigned int NVectorDimension>

void mitk::ToArray	(	ArrayType &	array,
		const itk::FixedArray< TCoordRep, NVectorDimension > &	vectorOrPoint
	)

Copy elements from an itk::FixedArray into an array.

Parameters

[out]	array	The array which will hold the elements. Must be of a type which overrides the [] operator.
[in]	vectorOrPoint	The itk::FixedArray which shall be copied. Can e.g. be mitk::Vector or mitk::Point.

Attention

array must be of dimension NVectorDimension!

This method implicitly converts between data types.

Definition at line 74 of file mitkArray.h.

Referenced by ToArray().

ToArray() [2/2]

template<typename ArrayType , typename TCoordRep , unsigned int NVectorDimension>

ArrayType mitk::ToArray

(

const itk::FixedArray< TCoordRep, NVectorDimension > &

vectorOrPoint

)

Copy elements from an itk::FixedArray into a new array and return it.

Parameters

[in]

vectorOrPoint

The itk::FixedArray which shall be copied. Can e.g. be mitk::Vector or mitk::Point.

Returns

A new array holding the elements of vectorOrPoint.

Attention

The array must be of dimension NVectorDimension!

This method implicitly converts between data types.

Definition at line 91 of file mitkArray.h.

References ToArray().

ToJSON()

MITKCORE_EXPORT void mitk::ToJSON	(	nlohmann::json &	j,
		AffineTransform3D::ConstPointer	transform
	)

Serialize an AffineTransform3D to a JSON array with 16 elements (row-major 4x4 matrix).

Parameters

[out]	j	The JSON value to write to.
[in]	transform	The transform to serialize.

TransferItkTransformToVtkMatrix()

template<class TTransformType >

void mitk::TransferItkTransformToVtkMatrix	(	const TTransformType *	itkTransform,
		vtkMatrix4x4 *	vtkmatrix
	)

Transfer an ITK transform into a VTK 4x4 matrix.

Copies the 3x3 rotation submatrix and the translation offset from the given ITK transform into a vtkMatrix4x4. The bottom row is set to [0, 0, 0, 1].

Template Parameters

TTransformType

The ITK transform type (e.g. AffineTransform3D).

Parameters

itkTransform	The source ITK transform.
vtkmatrix	The destination VTK 4x4 matrix.

See also

TransferVtkMatrixToItkTransform

Definition at line 75 of file mitkMatrixConvert.h.

TransferLabelContent() [1/2]

MITKMULTILABEL_EXPORT void mitk::TransferLabelContent	(	const Image *	sourceImage,
		Image *	destinationImage,
		const mitk::ConstLabelVector &	destinationLabelVector,
		mitk::Label::PixelType	sourceBackground = MultiLabelSegmentation::UNLABELED_VALUE,
		mitk::Label::PixelType	destinationBackground = MultiLabelSegmentation::UNLABELED_VALUE,
		bool	destinationBackgroundLocked = false,
		LabelValueMappingVector	labelMapping = { {1, 1} },
		MultiLabelSegmentation::MergeStyle	mergeStyle = MultiLabelSegmentation::MergeStyle::Replace,
		MultiLabelSegmentation::OverwriteStyle	overwriteStlye = MultiLabelSegmentation::OverwriteStyle::RegardLocks
	)

Helper function that transfers pixels of the specified source label from source image to the destination image by using a specified destination label. Function processes the whole image volume for all time steps. For more details please see TransferLabelContentAtTimeStep.

See also

TransferLabelContentAtTimeStep

TransferLabelContent() [2/2]

MITKMULTILABEL_EXPORT void mitk::TransferLabelContent	(	const MultiLabelSegmentation *	sourceImage,
		MultiLabelSegmentation *	destinationImage,
		LabelValueMappingVector	labelMapping = { {1, 1} },
		MultiLabelSegmentation::MergeStyle	mergeStyle = MultiLabelSegmentation::MergeStyle::Replace,
		MultiLabelSegmentation::OverwriteStyle	overwriteStlye = MultiLabelSegmentation::OverwriteStyle::RegardLocks
	)

Helper function that transfers pixels of the specified source label from source image to the destination image by using a specified destination label. Function processes the whole image volume for all time steps. For more details please see TransferLabelContentAtTimeStep for MultiLabelSegmentations.

See also

TransferLabelContentAtTimeStep

TransferLabelContentAtTimeStep() [1/2]

MITKMULTILABEL_EXPORT void mitk::TransferLabelContentAtTimeStep	(	const Image *	sourceImage,
		Image *	destinationImage,
		const mitk::ConstLabelVector &	destinationLabelVector,
		const TimeStepType	timeStep,
		mitk::Label::PixelType	sourceBackground = MultiLabelSegmentation::UNLABELED_VALUE,
		mitk::Label::PixelType	destinationBackground = MultiLabelSegmentation::UNLABELED_VALUE,
		bool	destinationBackgroundLocked = false,
		LabelValueMappingVector	labelMapping = { {1, 1} },
		MultiLabelSegmentation::MergeStyle	mergeStyle = MultiLabelSegmentation::MergeStyle::Replace,
		MultiLabelSegmentation::OverwriteStyle	overwriteStlye = MultiLabelSegmentation::OverwriteStyle::RegardLocks
	)

Helper function that transfers pixels of the specified source label from source image to the destination image by using a specified destination label for a specific time step. Function processes the whole image volume of the specified time step.

Remarks

the function assumes that it is only called with source and destination image of same geometry.

CAUTION: The function is not save, if sourceImage and destinationImage are the same instance and you transfer more then one label, because the changes are made in-place for performance reasons but not in one pass. If a mapped value A equals a "old value" that is later in the mapping, one ends up with a wrong transfer, as a pixel would be first mapped to A and then latter again, because it is also an "old" value in the mapping table.

Parameters

sourceImage	Pointer to the image that should be used as source for the transfer.
destinationImage	Pointer to the image that should be used as destination for the transfer.
destinationLabelVector	Reference to the vector of labels (incl. lock states) in the destination image. Unknown pixel values in the destinationImage will be assumed to be unlocked.
sourceBackground	Value indicating the background in the source image.
destinationBackground	Value indicating the background in the destination image.
destinationBackgroundLocked	Value indicating the lock state of the background in the destination image.
labelMapping	Map that encodes the mappings of all label pixel transfers that should be done. First element is the label in the source image. The second element is the label that transferred pixels should become in the destination image. The order in which the labels will be transferred is the same order of elements in the labelMapping. If you use a heterogeneous label mapping (e.g. (1,2); so changing the label while transferring), keep in mind that for the MergeStyle and OverwriteStyle only the destination label (second element) is relevant (e.g. what should be altered with MergeStyle Replace).
mergeStyle	indicates how the transfer should be done (merge or replace). For more details see documentation of MultiLabelSegmentation::MergeStyle.
overwriteStlye	indicates if label locks in the destination image should be regarded or not. For more details see documentation of MultiLabelSegmentation::OverwriteStyle.
timeStep	indicate the time step that should be transferred.

Precondition

sourceImage, destinationImage and destinationLabelVector must be valid

sourceImage and destinationImage must contain the indicated timeStep

destinationLabelVector must contain all indicated destinationLabels for mapping.

TransferLabelContentAtTimeStep() [2/2]

MITKMULTILABEL_EXPORT void mitk::TransferLabelContentAtTimeStep	(	const MultiLabelSegmentation *	sourceImage,
		MultiLabelSegmentation *	destinationImage,
		const TimeStepType	timeStep,
		LabelValueMappingVector	labelMapping = { {1, 1} },
		MultiLabelSegmentation::MergeStyle	mergeStyle = MultiLabelSegmentation::MergeStyle::Replace,
		MultiLabelSegmentation::OverwriteStyle	overwriteStlye = MultiLabelSegmentation::OverwriteStyle::RegardLocks
	)

Helper function that transfers pixels of the specified source label from source image to the destination image by using a specified destination label for a specific time step. Function processes the whole image volume of the specified time step.

Remarks

the function assumes that it is only called with source and destination image of same geometry.

CAUTION: The function is not save if sourceImage and destinationImage are the same instance and more than one label is transferred, because the changes are made in-place for performance reasons in multiple passes. If a mapped value A equals an "old value" that occurs later in the mapping, one ends up with a wrong transfer, as a pixel would be first mapped to A and then later again, because it is also an "old" value in the mapping table.

Parameters

sourceImage	Pointer to the MultiLabelSegmentation that should be used as source for the transfer.
destinationImage	Pointer to the MultiLabelSegmentation that should be used as destination for the transfer.
labelMapping	Map that encodes the mappings of all label pixel transfers that should be done. First element is the label in the source image. The second element is the label that transferred pixels should become in the destination image. The order in which the labels will be transferred is the same order of elements in the labelMapping. If you use a heterogeneous label mapping (e.g. (1,2); so changing the label while transferring), keep in mind that for the MergeStyle and OverwriteStyle only the destination label (second element) is relevant (e.g. what should be altered with MergeStyle Replace).
mergeStyle	indicates how the transfer should be done (merge or replace). For more details see documentation of MultiLabelSegmentation::MergeStyle.
overwriteStlye	indicates if label locks in the destination image should be regarded or not. For more details see documentation of MultiLabelSegmentation::OverwriteStyle.
timeStep	indicate the time step that should be transferred.

Precondition

sourceImage and destinationImage must be valid

sourceImage and destinationImage must contain the indicated timeStep

sourceImage must contain all indicated sourceLabels.

destinationImage must contain all indicated destinationLabels.

TransferVtkMatrixToItkTransform()

template<class TTransformType >

void mitk::TransferVtkMatrixToItkTransform	(	const vtkMatrix4x4 *	vtkmatrix,
		TTransformType *	itkTransform
	)

Transfer a VTK 4x4 matrix into an ITK transform.

Copies the 3x3 rotation submatrix and the translation offset from a vtkMatrix4x4 into the given ITK transform. The transform's internal matrix modification time is updated so that the inverse will be recomputed on the next request.

Template Parameters

TTransformType

The ITK transform type (e.g. AffineTransform3D).

Parameters

vtkmatrix	The source VTK 4x4 matrix.
itkTransform	The destination ITK transform. If nullptr, the function returns immediately.

See also

TransferItkTransformToVtkMatrix

ItkMatrixHack

Definition at line 38 of file mitkMatrixConvert.h.

UnregisterBackend()

void MITKLOG_EXPORT mitk::UnregisterBackend

(

LogBackendBase *

backend

)

Unregister a previously registered log backend.

After unregistration, the backend will no longer receive log messages. If the backend was not previously registered, this is a no-op.

Parameters

[in]

backend

Pointer to the backend to unregister.

See also

RegisterBackend()

VariantRequiresPatientHeight()

bool MITKPET_EXPORT mitk::VariantRequiresPatientHeight

(

SUVVariant

variant

)

Whether the given SUV variant's scale numerator depends on the patient's height.

Used by the SUVImageFilter to decide whether to require / validate a patient-height value during ConfigureFromProperties, and by the GUI to decide whether to expose a patient-height override control. Single source of truth for both consumers.

Parameters

[in]

variant

The SUV variant in question.

Returns

true for every variant except SUVVariant::BW.

VariantRequiresPatientSex()

bool MITKPET_EXPORT mitk::VariantRequiresPatientSex

(

SUVVariant

variant

)

Whether the given SUV variant's scale numerator depends on the patient's sex.

true for the three sex-specific variants (LBM_Janmahasatian, LBM_James128, IBW); false for BW and BSA. Same role as VariantRequiresPatientHeight: single source of truth for filter validation and GUI gating.

Parameters

[in]

variant

The SUV variant in question.

Returns

true iff the variant is sex-specific.

WindowKindToString()

MITKRESTAPI_EXPORT const char* mitk::WindowKindToString

(

WindowKind

kind

)

Returns

Wire/JSON form of a WindowKind ("2d" or "3d").

Variable Documentation

DEFAULT_UNDO_REDO_LIMIT

constexpr unsigned int mitk::DEFAULT_UNDO_REDO_LIMIT

inlineconstexpr

Default maximum number of operations kept on the undo/redo stack.

Used by UndoController when no UndoLimit preference is stored, and by the Undo/Redo UI as the value to fall back to when (re-)enabling a limited stack. A value of 0 means "unlimited"; this default is a finite cap.

Definition at line 29 of file mitkUndoController.h.

eps

MITKCORE_EXPORT const ScalarType mitk::eps

extern

Epsilon value for floating point comparison (vnl_math::eps * 100).

Referenced by mitk::Line< TCoordRep, NPointDimension >::BoxLineIntersection(), ConditionalOutputOfDifference(), Equal(), EqualArray(), mitk::Image::InitializeByItk(), mitk::Line< TCoordRep, NPointDimension >::IsParallel(), mitk::Line< TCoordRep, NPointDimension >::IsPartOfLine(), mitk::Line< TCoordRep, NPointDimension >::IsPartOfStraightLine(), mitk::Line< TCoordRep, NPointDimension >::operator==(), mitk::Line< TCoordRep, NPointDimension >::RectangleLineIntersection(), and mitk::CompareImageDataFilter::SetTolerance().

FADED_LABEL_OPACITY

constexpr double mitk::FADED_LABEL_OPACITY

inlineconstexpr

Opacity floor applied to the other labels while one is hovered/highlighted.

A faded label is never rendered more opaque than its normal appearance, so the mappers clamp this against the label's base opacity.

Definition at line 34 of file mitkLabelHighlightGuard.h.

HIGHLIGHTED_LABEL_OPACITY

constexpr double mitk::HIGHLIGHTED_LABEL_OPACITY

inlineconstexpr

Opacity applied to a hovered/highlighted label by the multi-label mappers.

Absolute, i.e. decoupled from the base segmentation opacity (node "opacity" times the "opacity factor" preference), so highlighting stays legible no matter how transparent the base is. Consumed by LabelSetImageVtkMapper2D and MultiLabelSegmentationVtkMapper3D.

Definition at line 28 of file mitkLabelHighlightGuard.h.

large

MITKCORE_EXPORT const double mitk::large

extern

A large value (std::numeric_limits<ScalarType>::max()).

MASK_SUITABILITY_TOLERANCE_COORDINATE

constexpr double mitk::MASK_SUITABILITY_TOLERANCE_COORDINATE

constexpr

Tolerance used to check if the mask and input image are compatible for coordinate aspects (origin, size, grid alignment).

Definition at line 101 of file mitkMaskUtilities.h.

MASK_SUITABILITY_TOLERANCE_DIRECTION

constexpr double mitk::MASK_SUITABILITY_TOLERANCE_DIRECTION

constexpr

Tolerance used to check if the mask and input image are compatible for direction aspects (orientation of mask and image).

Definition at line 104 of file mitkMaskUtilities.h.

NODE_PREDICATE_GEOMETRY_DEFAULT_CHECK_COORDINATE_PRECISION

constexpr double mitk::NODE_PREDICATE_GEOMETRY_DEFAULT_CHECK_COORDINATE_PRECISION

constexpr

The default tolerance for the comparison of spatial/world coordinate equality.

This tolerance is less strict than mitk::eps. The reason is that, for the typical use of the node predicate, mitk::eps would be too pedantic. We often encounter floating point differences and practically it makes no difference e.g. if two images differ something like 0.0001 mm in size or spacing or origin.

Definition at line 121 of file mitkNodePredicateGeometry.h.

NODE_PREDICATE_GEOMETRY_DEFAULT_CHECK_DIRECTION_PRECISION

constexpr double mitk::NODE_PREDICATE_GEOMETRY_DEFAULT_CHECK_DIRECTION_PRECISION

constexpr

The default tolerance for the comparison of direction matrix equality.

This tolerance is less strict than mitk::eps. The reason is that, for the typical use of the node predicate, mitk::eps would be too pedantic. We often encounter floating point differences and practically it makes no difference e.g. if the elements of the direction/orientation matrix differ something like 0.000001.

Definition at line 130 of file mitkNodePredicateGeometry.h.

nodeProp_RegEvalBlendFactor

const char* const mitk::nodeProp_RegEvalBlendFactor

Property key for the blend factor used in Blend evaluation style.

Definition at line 82 of file mitkRegVisPropertyTags.h.

nodeProp_RegEvalCheckerCount

const char* const mitk::nodeProp_RegEvalCheckerCount

Property key for the number of checkers used in Checkerboard evaluation style.

Definition at line 84 of file mitkRegVisPropertyTags.h.

nodeProp_RegEvalCurrentPosition

const char* const mitk::nodeProp_RegEvalCurrentPosition

Property key for the current crosshair position used in evaluation rendering.

Definition at line 90 of file mitkRegVisPropertyTags.h.

nodeProp_RegEvalStyle

const char* const mitk::nodeProp_RegEvalStyle

Property key for the registration evaluation visualization style (Blend, Checkerboard, Wipe, etc.).

Definition at line 80 of file mitkRegVisPropertyTags.h.

nodeProp_RegEvalTargetContour

const char* const mitk::nodeProp_RegEvalTargetContour

Property key controlling whether target contour overlay is shown in evaluation.

Definition at line 88 of file mitkRegVisPropertyTags.h.

nodeProp_RegEvalWipeStyle

const char* const mitk::nodeProp_RegEvalWipeStyle

Property key for the wipe style used in Wipe evaluation mode (Cross, Horizontal, Vertical).

Definition at line 86 of file mitkRegVisPropertyTags.h.

nodeProp_RegVisColor1Magnitude

const char* const mitk::nodeProp_RegVisColor1Magnitude

Property key for the first magnitude threshold in the color transfer function.

Definition at line 64 of file mitkRegVisPropertyTags.h.

nodeProp_RegVisColor1Value

const char* const mitk::nodeProp_RegVisColor1Value

Property key for the first color value in the color transfer function.

Definition at line 62 of file mitkRegVisPropertyTags.h.

nodeProp_RegVisColor2Magnitude

const char* const mitk::nodeProp_RegVisColor2Magnitude

Property key for the second magnitude threshold in the color transfer function.

Definition at line 68 of file mitkRegVisPropertyTags.h.

nodeProp_RegVisColor2Value

const char* const mitk::nodeProp_RegVisColor2Value

Property key for the second color value in the color transfer function.

Definition at line 66 of file mitkRegVisPropertyTags.h.

nodeProp_RegVisColor3Magnitude

const char* const mitk::nodeProp_RegVisColor3Magnitude

Property key for the third magnitude threshold in the color transfer function.

Definition at line 72 of file mitkRegVisPropertyTags.h.

nodeProp_RegVisColor3Value

const char* const mitk::nodeProp_RegVisColor3Value

Property key for the third color value in the color transfer function.

Definition at line 70 of file mitkRegVisPropertyTags.h.

nodeProp_RegVisColor4Magnitude

const char* const mitk::nodeProp_RegVisColor4Magnitude

Property key for the fourth magnitude threshold in the color transfer function.

Definition at line 76 of file mitkRegVisPropertyTags.h.

nodeProp_RegVisColor4Value

const char* const mitk::nodeProp_RegVisColor4Value

Property key for the fourth color value in the color transfer function.

Definition at line 74 of file mitkRegVisPropertyTags.h.

nodeProp_RegVisColorInterpolate

const char* const mitk::nodeProp_RegVisColorInterpolate

Property key controlling whether colors are interpolated between transfer function control points.

Definition at line 78 of file mitkRegVisPropertyTags.h.

nodeProp_RegVisColorStyle

const char* const mitk::nodeProp_RegVisColorStyle

Property key for the color style used in registration visualization (uniform or vector-magnitude-based).

Definition at line 56 of file mitkRegVisPropertyTags.h.

nodeProp_RegVisColorUni

const char* const mitk::nodeProp_RegVisColorUni

Property key for the uniform color used in registration visualization.

Definition at line 60 of file mitkRegVisPropertyTags.h.

nodeProp_RegVisDirection

const char* const mitk::nodeProp_RegVisDirection

Property key specifying the mapping direction for registration visualization (direct or inverse).

Definition at line 38 of file mitkRegVisPropertyTags.h.

nodeProp_RegVisFOVOrientation1

const char* const mitk::nodeProp_RegVisFOVOrientation1

Property key for the first row of the field-of-view orientation matrix.

Definition at line 46 of file mitkRegVisPropertyTags.h.

nodeProp_RegVisFOVOrientation2

const char* const mitk::nodeProp_RegVisFOVOrientation2

Property key for the second row of the field-of-view orientation matrix.

Definition at line 48 of file mitkRegVisPropertyTags.h.

nodeProp_RegVisFOVOrientation3

const char* const mitk::nodeProp_RegVisFOVOrientation3

Property key for the third row of the field-of-view orientation matrix.

Definition at line 50 of file mitkRegVisPropertyTags.h.

nodeProp_RegVisFOVOrigin

const char* const mitk::nodeProp_RegVisFOVOrigin

Property key for the field-of-view origin of the registration visualization.

Definition at line 42 of file mitkRegVisPropertyTags.h.

nodeProp_RegVisFOVSize

const char* const mitk::nodeProp_RegVisFOVSize

Property key for the field-of-view size of the registration visualization.

Definition at line 40 of file mitkRegVisPropertyTags.h.

nodeProp_RegVisFOVSpacing

const char* const mitk::nodeProp_RegVisFOVSpacing

Property key for the field-of-view spacing of the registration visualization.

Definition at line 44 of file mitkRegVisPropertyTags.h.

nodeProp_RegVisGlyph

const char* const mitk::nodeProp_RegVisGlyph

Property key controlling whether a glyph-based registration visualization is shown.

Definition at line 34 of file mitkRegVisPropertyTags.h.

nodeProp_RegVisGrid

const char* const mitk::nodeProp_RegVisGrid

Property key controlling whether a registration grid visualization is shown.

Definition at line 32 of file mitkRegVisPropertyTags.h.

nodeProp_RegVisGridFrequence

const char* const mitk::nodeProp_RegVisGridFrequence

Property key for the grid frequency (number of grid lines) in registration visualization.

Definition at line 52 of file mitkRegVisPropertyTags.h.

nodeProp_RegVisGridShowStart

const char* const mitk::nodeProp_RegVisGridShowStart

Property key controlling whether the undeformed start grid is shown alongside the deformed grid.

Definition at line 54 of file mitkRegVisPropertyTags.h.

nodeProp_RegVisGridStartColor

const char* const mitk::nodeProp_RegVisGridStartColor

Property key for the color of the undeformed start grid.

Definition at line 58 of file mitkRegVisPropertyTags.h.

nodeProp_RegVisPoints

const char* const mitk::nodeProp_RegVisPoints

Property key controlling whether a point-based registration visualization is shown.

Definition at line 36 of file mitkRegVisPropertyTags.h.

nodeProp_UID

const char* const mitk::nodeProp_UID

Property key for the MatchPoint UID used to uniquely identify a data node.

Definition at line 52 of file mitkMatchPointPropertyTags.h.

PATH_ENV_SEPARATOR

constexpr char mitk::PATH_ENV_SEPARATOR

inlineconstexpr

Definition at line 27 of file mitkEnvironment.h.

PixelComponentUserType

const int mitk::PixelComponentUserType

static

Starting integer value for user-defined pixel component types (beyond the built-in ITK component types).

Definition at line 69 of file mitkPixelTypeTraits.h.

PixelUserType

const int mitk::PixelUserType

static

Starting integer value for user-defined pixel types (beyond the built-in ITK pixel types).

Definition at line 66 of file mitkPixelTypeTraits.h.

Prop_MappingInput

const char* const mitk::Prop_MappingInput

Property key for the input section that specifies what was mapped.

Definition at line 39 of file mitkMatchPointPropertyTags.h.

Prop_MappingInputData

const char* const mitk::Prop_MappingInputData

Property key storing the UID of the data object that was mapped (the source) by the specified registration to generate the current instance.

Definition at line 42 of file mitkMatchPointPropertyTags.h.

Prop_MappingInterpolator

const char* const mitk::Prop_MappingInterpolator

Property key storing the type of the interpolation strategy that was used to map the object.

If not set, no interpolation was needed for the mapping operation.

Definition at line 46 of file mitkMatchPointPropertyTags.h.

Prop_MappingRefinedGeometry

const char* const mitk::Prop_MappingRefinedGeometry

Property key indicating that the data was not mapped (resampled) but only had its geometry refined.

Definition at line 48 of file mitkMatchPointPropertyTags.h.

Prop_RegAlgMovingData

const char* const mitk::Prop_RegAlgMovingData

Property key storing the UID(s) of the data object(s) used as moving objects for determining the registration.

Definition at line 35 of file mitkMatchPointPropertyTags.h.

Prop_RegAlgTargetData

const char* const mitk::Prop_RegAlgTargetData

Property key storing the UID(s) of the data object(s) used as target for determining the registration.

Definition at line 33 of file mitkMatchPointPropertyTags.h.

Prop_RegAlgUsed

const char* const mitk::Prop_RegAlgUsed

Property key storing the UID of the algorithm that was used to determine a registration.

Definition at line 31 of file mitkMatchPointPropertyTags.h.

Prop_RegUID

const char* const mitk::Prop_RegUID

Property key storing the UID of the registration instance.

Definition at line 37 of file mitkMatchPointPropertyTags.h.

Prop_UID

const char* const mitk::Prop_UID

Property key for the MatchPoint UID used to uniquely identify a data object.

Definition at line 50 of file mitkMatchPointPropertyTags.h.

PROPERTY_KEY_TIMEGEOMETRY_TIMEPOINTS

constexpr const char* const mitk::PROPERTY_KEY_TIMEGEOMETRY_TIMEPOINTS

constexpr

Definition at line 41 of file mitkMultiLabelIOHelper.h.

PROPERTY_KEY_TIMEGEOMETRY_TYPE

constexpr const char* const mitk::PROPERTY_KEY_TIMEGEOMETRY_TYPE

constexpr

Definition at line 40 of file mitkMultiLabelIOHelper.h.

PROPERTY_KEY_UID

constexpr const char* const mitk::PROPERTY_KEY_UID

constexpr

Definition at line 42 of file mitkMultiLabelIOHelper.h.

PROPERTY_NAME_TIMEGEOMETRY_TIMEPOINTS

constexpr const char* const mitk::PROPERTY_NAME_TIMEGEOMETRY_TIMEPOINTS

constexpr

Definition at line 39 of file mitkMultiLabelIOHelper.h.

PROPERTY_NAME_TIMEGEOMETRY_TYPE

constexpr const char* const mitk::PROPERTY_NAME_TIMEGEOMETRY_TYPE

constexpr

Definition at line 38 of file mitkMultiLabelIOHelper.h.

replace

const char* mitk::replace[]

static

Dictionary for abbreviating class, module, and namespace names in log output.

This array of string pairs maps long names (file extensions, namespace prefixes, common words) to shorter abbreviations for more compact console output. Entries are organized as consecutive pairs of {pattern, replacement}.

Definition at line 26 of file mitkLogDictionary.h.

sqrteps

MITKCORE_EXPORT const ScalarType mitk::sqrteps

extern

Square root of epsilon (vnl_math::sqrteps).

STATS_GENERATION_STATUS_PROPERTY_NAME

const std::string mitk::STATS_GENERATION_STATUS_PROPERTY_NAME

static

Property name for the generation status of the statistics.

Definition at line 32 of file mitkImageStatisticsContainerManager.h.

STATS_GENERATION_STATUS_VALUE_BASE_DATA_FAILED

const std::string mitk::STATS_GENERATION_STATUS_VALUE_BASE_DATA_FAILED

static

Status value indicating statistics computation failed.

Definition at line 38 of file mitkImageStatisticsContainerManager.h.

STATS_GENERATION_STATUS_VALUE_PENDING

const std::string mitk::STATS_GENERATION_STATUS_VALUE_PENDING

static

Status value indicating statistics computation is pending.

Definition at line 36 of file mitkImageStatisticsContainerManager.h.

STATS_GENERATION_STATUS_VALUE_WORK_IN_PROGRESS

const std::string mitk::STATS_GENERATION_STATUS_VALUE_WORK_IN_PROGRESS

static

Status value indicating statistics computation is in progress.

Definition at line 34 of file mitkImageStatisticsContainerManager.h.

STATS_HISTOGRAM_BIN_PROPERTY_NAME

const std::string mitk::STATS_HISTOGRAM_BIN_PROPERTY_NAME

static

Property name for the histogram bin count stored on statistics nodes.

Definition at line 28 of file mitkImageStatisticsContainerManager.h.

STATS_IGNORE_ZERO_VOXEL_PROPERTY_NAME

const std::string mitk::STATS_IGNORE_ZERO_VOXEL_PROPERTY_NAME

static

Property name indicating whether zero voxels were ignored.

Definition at line 30 of file mitkImageStatisticsContainerManager.h.

TIMESTEP_INVALID

const TimeStepType mitk::TIMESTEP_INVALID

static

Sentinel value representing an invalid time step.

Since TimeStepType is unsigned, assigning -1 yields the maximum representable value, which is used as the "invalid" marker.

Definition at line 38 of file mitkTimeGeometry.h.