Parameterizer for the TwoTissueCompartmentModel. More...

#include <mitkTwoTissueCompartmentModelParameterizer.h>

Inheritance diagram for mitk::TwoTissueCompartmentModelParameterizer:

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Collaboration diagram for mitk::TwoTissueCompartmentModelParameterizer:

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Public Types
typedef TwoTissueCompartmentModelParameterizer	Self

typedef mitk::AIFBasedModelParameterizerBase< mitk::TwoTissueCompartmentModel >	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef Superclass::ModelBaseType	ModelBaseType

typedef Superclass::ModelBasePointer	ModelBasePointer

typedef Superclass::ModelType	ModelType

typedef ModelType::Pointer	ModelPointer

typedef Superclass::StaticParameterValueType	StaticParameterValueType

typedef Superclass::StaticParameterValuesType	StaticParameterValuesType

typedef Superclass::StaticParameterMapType	StaticParameterMapType

typedef Superclass::IndexType	IndexType

Public Types inherited from mitk::AIFBasedModelParameterizerBase< mitk::TwoTissueCompartmentModel >
typedef AIFBasedModelParameterizerBase< mitk::TwoTissueCompartmentModel >	Self

typedef ConcreteModelParameterizerBase< mitk::TwoTissueCompartmentModel >	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef Superclass::ModelBaseType	ModelBaseType

typedef Superclass::ModelBasePointer	ModelBasePointer

typedef Superclass::ModelType	ModelType

typedef Superclass::ModelPointer	ModelPointer

typedef Superclass::StaticParameterValueType	StaticParameterValueType

typedef Superclass::StaticParameterValuesType	StaticParameterValuesType

typedef Superclass::StaticParameterMapType	StaticParameterMapType

typedef Superclass::IndexType	IndexType

Public Types inherited from mitk::ConcreteModelParameterizerBase< TModel >
typedef ConcreteModelParameterizerBase< TModel >	Self

typedef ModelParameterizerBase	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef Superclass::ModelBaseType	ModelBaseType

typedef Superclass::ModelBasePointer	ModelBasePointer

typedef TModel	ModelType

typedef ModelType::Pointer	ModelPointer

typedef Superclass::StaticParameterValueType	StaticParameterValueType

typedef Superclass::StaticParameterValuesType	StaticParameterValuesType

typedef Superclass::StaticParameterMapType	StaticParameterMapType

typedef Superclass::IndexType	IndexType

Public Types inherited from mitk::ModelParameterizerBase
typedef ModelParameterizerBase	Self

typedef itk::Object	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef ModelBase	ModelBaseType

typedef ModelBaseType::Pointer	ModelBasePointer

typedef ModelBaseType::ParametersType	ParametersType

typedef ModelBaseType::StaticParameterValueType	StaticParameterValueType

typedef ModelBaseType::StaticParameterValuesType	StaticParameterValuesType

typedef ModelBaseType::StaticParameterMapType	StaticParameterMapType

typedef ModelBaseType::TimeGridType	TimeGridType

typedef ::itk::Index< 3 >	IndexType

Public Types inherited from mitk::ModelTraitsInterface
typedef itk::Array< double >	ModelResultType
	Type representing the model output signal as an array of doubles. More...

using	ParameterValueType = double
	Type of a single parameter value. More...

typedef itk::Array< ParameterValueType >	ParametersType
	Type representing a vector of parameter values. More...

typedef std::string	ParameterNameType
	Type used for parameter names. More...

typedef std::vector< ParameterNameType >	ParameterNamesType
	Type for a list of parameter names. More...

typedef ParametersType::SizeValueType	ParametersSizeType
	Type for the count of parameters. More...

typedef ParameterNamesType	DerivedParameterNamesType
	Type for a list of derived parameter names. More...

typedef ParametersSizeType	DerivedParametersSizeType
	Type for the count of derived parameters. More...

typedef std::map< ParameterNameType, double >	ParamterScaleMapType
	Map type associating parameter names to their scaling factors. More...

typedef std::map< ParameterNameType, std::string >	ParamterUnitMapType
	Map type associating parameter names to their unit strings. More...

typedef std::map< ParameterNameType, double >	DerivedParamterScaleMapType
	Map type associating derived parameter names to their scaling factors. More...

typedef std::map< ParameterNameType, std::string >	DerivedParamterUnitMapType
	Map type associating derived parameter names to their unit strings. More...

typedef std::string	FunctionStringType
	Type for the function string representation of the model. More...

typedef std::string	ModellClassIDType
	Type for the unique class identifier of the model. More...

Public Member Functions
virtual const char *	GetClassName () const

ParametersType	GetDefaultInitialParameterization () const override

Public Member Functions inherited from mitk::AIFBasedModelParameterizerBase< mitk::TwoTissueCompartmentModel >
virtual void	SetAIF (mitk::AIFBasedModelBase::AterialInputFunctionType _arg)
	Sets the Arterial Input Function concentration values. More...

virtual const mitk::AIFBasedModelBase::AterialInputFunctionType &	GetAIF ()
	Returns the currently set AIF concentration values. More...

virtual void	SetAIFTimeGrid (mitk::ModelBase::TimeGridType _arg)
	Sets the time grid corresponding to the AIF values. More...

virtual const mitk::ModelBase::TimeGridType &	GetAIFTimeGrid ()
	Returns the currently set AIF time grid. More...

StaticParameterMapType	GetGlobalStaticParameters () const override
	Returns the global static parameters for the model. More...

Public Member Functions inherited from mitk::ConcreteModelParameterizerBase< TModel >
StaticParameterMapType	GetLocalStaticParameters (const IndexType &) const override
	Returns the local static parameters specific to the given image position. More...

ModelBasePointer	GenerateParameterizedModel (const IndexType &currentPosition) const override
	Generates a fully parameterized model instance for the given position. More...

ModelBasePointer	GenerateParameterizedModel () const override
	Generates a model instance with only global static parameterization. More...

ParameterNamesType	GetParameterNames () const override
	Returns the names of parameters that must be defined when using the model to compute the signal (GetSignal()). More...

ParametersSizeType	GetNumberOfParameters () const override
	Returns the number of parameters that must be defined when using the model to compute the signal (GetSignal()). More...

ParamterScaleMapType	GetParameterScales () const override
	Returns the scaling factors for all model parameters. More...

ParamterUnitMapType	GetParameterUnits () const override
	Returns the unit strings for all model parameters. More...

ParameterNamesType	GetDerivedParameterNames () const override
	Returns the names of derived parameters that can be computed by the model. More...

ParametersSizeType	GetNumberOfDerivedParameters () const override
	Returns the number of derived parameters that can be computed by the model. More...

DerivedParamterScaleMapType	GetDerivedParameterScales () const override
	Returns the scaling factors for all derived parameters. More...

DerivedParamterUnitMapType	GetDerivedParameterUnits () const override
	Returns the unit strings for all derived parameters. More...

std::string	GetModelDisplayName () const override
	Returns the human-readable display name of the model. More...

std::string	GetModelType () const override
	Returns the type/category string of the model (e.g. "Linear", "Pharmacokinetic"). More...

FunctionStringType	GetFunctionString () const override
	Returns a parsable function string representing the model equation. More...

ModellClassIDType	GetClassID () const override
	Returns the unique class identifier for this model type. More...

std::string	GetXName () const override
	Returns the name of the independent variable used by the model (e.g. "x"). More...

std::string	GetXAxisName () const override
	Returns the display name of the x-axis (e.g. "Time"). More...

std::string	GetXAxisUnit () const override
	Returns the unit of the x-axis (e.g. "s", "ms"). More...

std::string	GetYAxisName () const override
	Returns the display name of the y-axis (e.g. "Signal Intensity"). More...

std::string	GetYAxisUnit () const override
	Returns the unit of the y-axis. More...

Public Member Functions inherited from mitk::ModelParameterizerBase
ParametersType	GetInitialParameterization () const
	Returns the initial parameterization for fitting. More...

ParametersType	GetInitialParameterization (const IndexType &currentPosition) const
	Returns the initial parameterization for a specific image position. More...

void	SetInitialParameterizationDelegate (const InitialParameterizationDelegateBase *delegate)
	Sets a custom strategy for defining the initial parameterization. More...

virtual void	SetDefaultTimeGrid (TimeGridType _arg)

virtual const TimeGridType &	GetDefaultTimeGrid ()

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from mitk::ConcreteModelParameterizerBase< TModel >
static Pointer	New ()

Protected Member Functions
	TwoTissueCompartmentModelParameterizer ()

	~TwoTissueCompartmentModelParameterizer () override

Protected Member Functions inherited from mitk::AIFBasedModelParameterizerBase< mitk::TwoTissueCompartmentModel >
	AIFBasedModelParameterizerBase ()

	~AIFBasedModelParameterizerBase () override

Protected Member Functions inherited from mitk::ConcreteModelParameterizerBase< TModel >
	ConcreteModelParameterizerBase ()

	~ConcreteModelParameterizerBase () override

Protected Member Functions inherited from mitk::ModelParameterizerBase
	ModelParameterizerBase ()

	~ModelParameterizerBase () override

Protected Member Functions inherited from mitk::ModelTraitsInterface
	ModelTraitsInterface ()

virtual	~ModelTraitsInterface ()

Additional Inherited Members
Protected Attributes inherited from mitk::AIFBasedModelParameterizerBase< mitk::TwoTissueCompartmentModel >
mitk::AIFBasedModelBase::AterialInputFunctionType	m_AIF

mitk::ModelBase::TimeGridType	m_AIFTimeGrid

Protected Attributes inherited from mitk::ModelParameterizerBase
InitialParameterizationDelegateBase::ConstPointer	m_InitialDelegate

TimeGridType	m_DefaultTimeGrid