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| | mitkClassMacro (ThinPlateSplineCurvedGeometry, LandmarkProjectorBasedCurvedGeometry) |
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| Pointer | Clone () const |
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| void | ComputeGeometry () override |
| | Compute the geometry by initializing the thin-plate-spline transform from projected and target landmarks. More...
|
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| vtkThinPlateSplineTransform * | GetThinPlateSplineTransform () const |
| | Return the underlying vtkThinPlateSplineTransform. More...
|
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| virtual void | SetSigma (double sigma) |
| | Set the stiffness parameter (sigma) of the thin-plate-spline transform. More...
|
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| virtual double | GetSigma () const |
| | Get the stiffness parameter (sigma) of the thin-plate-spline transform. More...
|
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| bool | IsValid () const override |
| | Check whether the geometry is valid. More...
|
| |
 Public Member Functions inherited from mitk::LandmarkProjectorBasedCurvedGeometry |
| | mitkClassMacro (LandmarkProjectorBasedCurvedGeometry, AbstractTransformGeometry) |
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| Pointer | Clone () const |
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| void | SetLandmarkProjector (mitk::LandmarkProjector *aLandmarkProjector) |
| | Set the landmark projector used to project target landmarks. More...
|
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| virtual const mitk::LandmarkProjector * | GetLandmarkProjector () |
| | Get the landmark projector. More...
|
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| void | SetFrameGeometry (const mitk::BaseGeometry *frameGeometry) override |
| | Set the frame geometry and forward it to the landmark projector. More...
|
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| virtual vtkAbstractTransform * | GetInterpolatingAbstractTransform () const |
| | Get the interpolating abstract transform. More...
|
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| virtual void | SetTargetLandmarks (const mitk::PointSet::DataType::PointsContainer *_arg) |
| | Set the landmarks through which the geometry shall pass. More...
|
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| virtual const mitk::PointSet::DataType::PointsContainer * | GetTargetLandmarks () |
| | Get the landmarks through which the geometry shall pass. More...
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| | mitkClassMacro (AbstractTransformGeometry, PlaneGeometry) |
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| Pointer | Clone () const |
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| virtual vtkAbstractTransform * | GetVtkAbstractTransform () const |
| | Get the underlying vtkAbstractTransform. More...
|
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| itk::ModifiedTimeType | GetMTime () const override |
| | Get the modification time, accounting for the transform. More...
|
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| virtual const PlaneGeometry * | GetPlane () |
| | Get the planar rectangle used as the 2D parameter space. More...
|
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| bool | Project (const mitk::Point3D &pt3d_mm, mitk::Point3D &projectedPt3d_mm) const override |
| | Project a 3D point onto the curved surface. More...
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| bool | Project (const mitk::Vector3D &vec3d_mm, mitk::Vector3D &projectedVec3d_mm) const override |
| | Project a 3D vector onto the curved surface. More...
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| bool | Map (const mitk::Point3D &pt3d_mm, mitk::Point2D &pt2d_mm) const override |
| | Map a 3D world point onto the 2D parameter space. More...
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| void | Map (const mitk::Point2D &pt2d_mm, mitk::Point3D &pt3d_mm) const override |
| | Map a 2D parameter-space point to 3D world coordinates. More...
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| bool | Map (const mitk::Point3D &atPt3d_mm, const mitk::Vector3D &vec3d_mm, mitk::Vector2D &vec2d_mm) const override |
| | Map a 3D vector at a given 3D point to a 2D parameter-space vector. More...
|
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| void | Map (const mitk::Point2D &atPt2d_mm, const mitk::Vector2D &vec2d_mm, mitk::Vector3D &vec3d_mm) const override |
| | Map a 2D parameter-space vector to a 3D world vector. More...
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| void | IndexToWorld (const mitk::Point2D &pt_units, mitk::Point2D &pt_mm) const override |
| | Convert 2D index coordinates to 2D world coordinates via the internal plane. More...
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| void | WorldToIndex (const mitk::Point2D &pt_mm, mitk::Point2D &pt_units) const override |
| | Convert 2D world coordinates to 2D index coordinates via the internal plane. More...
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| void | IndexToWorld (const mitk::Vector2D &vec_units, mitk::Vector2D &vec_mm) const override |
| | Convert 2D index coordinates of a vector to world coordinates (mm). More...
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| void | WorldToIndex (const mitk::Vector2D &vec_mm, mitk::Vector2D &vec_units) const override |
| | Convert world coordinates (mm) of a 2D vector to continuous index coordinates. More...
|
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| bool | IsAbove (const Point3D &pt3d_mm, bool considerBoundingBox=false) const override |
| | Determine whether a point is above the curved plane. More...
|
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| virtual mitk::ScalarType | GetParametricExtentInMM (int direction) const |
| | Get the parametric extent in mm for a given direction. More...
|
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| virtual const itk::Transform< mitk::ScalarType, 3, 3 > * | GetParametricTransform () const |
| | Get the parametric transform (the ITK wrapper around the vtkAbstractTransform). More...
|
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| virtual void | SetOversampling (mitk::ScalarType oversampling) |
| | Multiply the parametric bounds by an oversampling factor. More...
|
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| virtual void | CalculateFrameGeometry () |
| | Compute the frame geometry (IndexToWorldTransform + bounds) around the curved surface. More...
|
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| virtual const BoundingBox * | GetParametricBoundingBox () |
| | Get the parametric bounding box. More...
|
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| const BoundingBox::BoundsArrayType & | GetParametricBounds () const |
| | Get the parametric bounds array. More...
|
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| mitk::ScalarType | GetParametricExtent (int direction) const |
| | Get the parametric extent in a given direction (in index/unit coordinates). More...
|
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| | mitkClassMacro (PlaneGeometry, BaseGeometry) |
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| Pointer | Clone () const |
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| virtual void | InitializeStandardPlane (const BaseGeometry *geometry3D, AnatomicalPlane planeorientation=AnatomicalPlane::Axial, ScalarType zPosition=0, bool frontside=true, bool rotated=false, bool top=true) |
| | Initialize a plane with orientation AnatomicalPlane (default: axial) with respect to BaseGeometry (default: identity). Spacing also taken from BaseGeometry. More...
|
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| virtual void | InitializeStandardPlane (const BaseGeometry *geometry3D, bool top, AnatomicalPlane planeorientation=AnatomicalPlane::Axial, bool frontside=true, bool rotated=false) |
| | Initialize a plane with orientation AnatomicalPlane (default: axial) with respect to BaseGeometry (default: identity). Spacing also taken from BaseGeometry. More...
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| virtual void | InitializeStandardPlane (ScalarType width, ScalarType height, const AffineTransform3D *transform=nullptr, AnatomicalPlane planeorientation=AnatomicalPlane::Axial, ScalarType zPosition=0, bool frontside=true, bool rotated=false, bool top=true) |
| | Initialize a plane with orientation AnatomicalPlane (default: axial) with respect to transform (default: identity) given width and height in units. More...
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| virtual void | InitializeStandardPlane (ScalarType width, ScalarType height, const Vector3D &spacing, AnatomicalPlane planeorientation=AnatomicalPlane::Axial, ScalarType zPosition=0, bool frontside=true, bool rotated=false, bool top=true) |
| | Initialize plane with orientation AnatomicalPlane (default: axial) given width, height and spacing. More...
|
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| virtual void | InitializeStandardPlane (ScalarType width, ScalarType height, const Vector3D &rightVector, const Vector3D &downVector, const Vector3D *spacing=nullptr) |
| | Initialize plane by width and height in pixels, right-/down-vector (itk) to describe orientation in world-space (vectors will be normalized) and spacing (default: 1.0 mm in all directions). More...
|
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| virtual void | InitializeStandardPlane (ScalarType width, ScalarType height, const VnlVector &rightVector, const VnlVector &downVector, const Vector3D *spacing=nullptr) |
| | Initialize plane by width and height in pixels, right-/down-vector (vnl) to describe orientation in world-space (vectors will be normalized) and spacing (default: 1.0 mm in all directions). More...
|
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| virtual void | InitializeStandardPlane (const Vector3D &rightVector, const Vector3D &downVector, const Vector3D *spacing=nullptr) |
| | Initialize plane by right-/down-vector (itk) and spacing (default: 1.0 mm in all directions). More...
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| virtual void | InitializeStandardPlane (const VnlVector &rightVector, const VnlVector &downVector, const Vector3D *spacing=nullptr) |
| | Initialize plane by right-/down-vector (vnl) and spacing (default: 1.0 mm in all directions). More...
|
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| virtual void | InitializePlane (const Point3D &origin, const Vector3D &normal) |
| | Initialize plane by origin and normal (size is 1.0 mm in all directions, direction of right-/down-vector valid but undefined). More...
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| void | SetMatrixByVectors (const VnlVector &rightVector, const VnlVector &downVector, ScalarType thickness=1.0) |
| | Initialize plane by right-/down-vector. More...
|
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| Vector3D | GetNormal () const |
| | Get the normal vector of the plane. More...
|
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| VnlVector | GetNormalVnl () const |
| | Get the normal vector of the plane as a VnlVector. More...
|
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| virtual ScalarType | SignedDistance (const Point3D &pt3d_mm) const |
| | Compute the signed distance of a point from the plane. More...
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| ScalarType | DistanceFromPlane (const Point3D &pt3d_mm) const |
| | Unsigned distance of a point from the infinite plane. More...
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| ScalarType | SignedDistanceFromPlane (const Point3D &pt3d_mm) const |
| | Signed distance of the point from the plane (bounding-box not considered) More...
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| ScalarType | DistanceFromPlane (const PlaneGeometry *plane) const |
| | Distance of the plane from another plane (bounding-box not considered) More...
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| ScalarType | SignedDistanceFromPlane (const PlaneGeometry *plane) const |
| | Signed distance of the plane from another plane (bounding-box not considered) More...
|
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| bool | IntersectionLine (const PlaneGeometry *plane, Line3D &crossline) const |
| | Calculate the intersecting line of two planes. More...
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| unsigned int | IntersectWithPlane2D (const PlaneGeometry *plane, Point2D &lineFrom, Point2D &lineTo) const |
| | Calculate two points where another plane intersects the border of this plane. More...
|
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| double | Angle (const PlaneGeometry *plane) const |
| | Calculate the angle between two planes. More...
|
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| double | Angle (const Line3D &line) const |
| | Calculate the angle between the plane and a line. More...
|
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| bool | IntersectionPoint (const Line3D &line, Point3D &intersectionPoint) const |
| | Calculate intersection point between the plane and a line. More...
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| bool | IntersectionPointParam (const Line3D &line, double &t) const |
| | Calculate line parameter of intersection point between the plane and a line. More...
|
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| bool | IsParallel (const PlaneGeometry *plane) const |
| | Returns whether the plane is parallel to another plane. More...
|
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| bool | IsOnPlane (const Point3D &point) const |
| | Returns whether the point is on the plane (bounding-box not considered) More...
|
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| bool | IsOnPlane (const Line3D &line) const |
| | Returns whether the line is on the plane (bounding-box not considered) More...
|
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| bool | IsOnPlane (const PlaneGeometry *plane) const |
| | Returns whether the plane is on the plane (bounding-box not considered) More...
|
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| Point3D | ProjectPointOntoPlane (const Point3D &pt) const |
| | Returns the lot from the point to the plane. More...
|
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| void | ExecuteOperation (Operation *operation) override |
| | Execute an operation to re-orient or reposition the plane. More...
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| virtual void | SetSizeInUnits (mitk::ScalarType width, mitk::ScalarType height) |
| | Set the width and height of this 2D-geometry in units by calling SetBounds. This does not change the extent in mm! More...
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| ScalarType | Distance (const Point3D &pt3d_mm) const |
| | Unsigned distance of a point from the geometry. More...
|
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| void | SetReferenceGeometry (const mitk::BaseGeometry *geometry) |
| | Set the geometrical frame of reference in which this PlaneGeometry is placed. More...
|
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| const BaseGeometry * | GetReferenceGeometry () const |
| | Get the geometrical frame of reference for this PlaneGeometry. More...
|
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| bool | HasReferenceGeometry () const |
| | Check whether a reference geometry has been set. More...
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| | mitkClassMacroItkParent (BaseGeometry, itk::Object) |
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| Pointer | Clone () const |
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| Point3D | GetOrigin () const |
| | Get the origin of the geometry in world coordinates (mm). More...
|
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| void | SetOrigin (const Point3D &origin) |
| | Set the origin of the geometry in world coordinates (mm). More...
|
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| mitk::Vector3D | GetSpacing () const |
| | Get the spacing (voxel size) in mm per unit for each axis. More...
|
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| void | SetSpacing (const mitk::Vector3D &aSpacing, bool enforceSetSpacing=false) |
| | Set the spacing (voxel size) for each axis. More...
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| VnlVector | GetOriginVnl () const |
| | Get the origin as a VNL vector. More...
|
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| virtual unsigned int | GetFrameOfReferenceID () const |
| | Get the DICOM FrameOfReferenceID referring to the world coordinate system. More...
|
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| virtual void | SetFrameOfReferenceID (unsigned int _arg) |
| | Set the DICOM FrameOfReferenceID referring to the world coordinate system. More...
|
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| virtual unsigned long | GetIndexToWorldTransformLastModified () const |
| | Get the last-modified timestamp of the IndexToWorldTransform. More...
|
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| void | Modified () const override |
| | Overloaded Modified() to support the ModifiedLock mechanism. More...
|
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| void | Initialize () |
| | Initialize the geometry to default values. More...
|
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| void | InitializeGeometry (Self *newGeometry) const |
| | Copy the essential geometry properties into another instance. More...
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| mitk::AffineTransform3D * | GetIndexToWorldTransform () |
| | Get the affine transform that maps index coordinates to world coordinates. More...
|
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| const mitk::AffineTransform3D * | GetIndexToWorldTransform () const |
| | Get the affine transform that maps index coordinates to world coordinates (const). More...
|
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| void | SetIndexToWorldTransform (mitk::AffineTransform3D *transform) |
| | Set the affine transform for index-to-world coordinate mapping. More...
|
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| void | SetIndexToWorldTransformByVtkMatrix (vtkMatrix4x4 *vtkmatrix) |
| | Set the IndexToWorldTransform via a vtkMatrix4x4. More...
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| void | SetIndexToWorldTransformWithoutChangingSpacing (mitk::AffineTransform3D *transform) |
| | Set the IndexToWorldTransform while preserving the current spacing. More...
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| void | SetIndexToWorldTransformByVtkMatrixWithoutChangingSpacing (vtkMatrix4x4 *vtkmatrix) |
| | Set the IndexToWorldTransform via a vtkMatrix4x4 while preserving spacing. More...
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| vtkMatrix4x4 * | GetVtkMatrix () |
| | Get the IndexToWorldTransform as a 4x4 VTK matrix. More...
|
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| const vtkMatrix4x4 * | GetVtkMatrix () const |
| | Get the IndexToWorldTransform as a 4x4 VTK matrix (const). More...
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| vtkLinearTransform * | GetVtkTransform () const |
| | Get the IndexToWorldTransform as a vtkLinearTransform. More...
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| void | SetIdentity () |
| | Reset the geometry to identity. More...
|
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| void | Compose (const TransformType *other, bool pre=false) |
| | Compose the IndexToWorldTransform with another transform. More...
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| void | Compose (const vtkMatrix4x4 *vtkmatrix, bool pre=false) |
| | Compose the IndexToWorldTransform with a vtkMatrix4x4. More...
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| void | Translate (const Vector3D &vector) |
| | Translate the origin by a given vector. More...
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| void | WorldToIndex (const mitk::Point3D &pt_mm, mitk::Point3D &pt_units) const |
| | Convert world coordinates (mm) of a point to continuous index coordinates. More...
|
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| void | WorldToIndex (const mitk::Vector3D &vec_mm, mitk::Vector3D &vec_units) const |
| | Convert world coordinates (mm) of a vector to continuous index coordinates. More...
|
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| template<unsigned int VIndexDimension> |
| void | WorldToIndex (const mitk::Point3D &pt_mm, itk::Index< VIndexDimension > &index) const |
| | Convert world coordinates (mm) of a point to discrete (integer) index coordinates. More...
|
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| void | IndexToWorld (const mitk::Vector3D &vec_units, mitk::Vector3D &vec_mm) const |
| | Convert index coordinates of a vector to world coordinates (mm). More...
|
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| void | IndexToWorld (const mitk::Point3D &pt_units, mitk::Point3D &pt_mm) const |
| | Convert continuous or discrete index coordinates of a point to world coordinates (mm). More...
|
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| template<unsigned int VIndexDimension> |
| void | IndexToWorld (const itk::Index< VIndexDimension > &index, mitk::Point3D &pt_mm) const |
| | Convert discrete (itk::Index) index coordinates of a point to world coordinates (mm). More...
|
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| template<class TCoordRep > |
| void | ItkPhysicalPointToWorld (const itk::Point< TCoordRep, 3 > &itkPhysicalPoint, mitk::Point3D &pt_mm) const |
| | Convert an ITK physical point to MITK world coordinates. More...
|
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| template<class TCoordRep > |
| void | WorldToItkPhysicalPoint (const mitk::Point3D &pt_mm, itk::Point< TCoordRep, 3 > &itkPhysicalPoint) const |
| | Convert MITK world coordinates to ITK physical coordinates. More...
|
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| virtual const BoundingBoxType * | GetBoundingBox () |
| | Get the bounding box in index/unit coordinates. More...
|
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| const BoundsArrayType | GetBounds () const |
| | Get the bounding box bounds as a BoundsArrayType in index/unit coordinates. More...
|
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| void | SetBounds (const BoundsArrayType &bounds) |
| | Set the bounding box in index/unit coordinates. More...
|
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| void | SetFloatBounds (const float bounds[6]) |
| | Set the bounding box via a float array. More...
|
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| void | SetFloatBounds (const double bounds[6]) |
| | Set the bounding box via a double array. More...
|
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| VnlVector | GetMatrixColumn (unsigned int direction) const |
| | Get a column of the IndexToWorldTransform matrix as a VnlVector. More...
|
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| mitk::BoundingBox::Pointer | CalculateBoundingBoxRelativeToTransform (const mitk::AffineTransform3D *transform) const |
| | Calculate a bounding box relative to a given transform. More...
|
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| ScalarType | GetExtent (unsigned int direction) const |
| | Set the time bounds (in ms) More...
|
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| ScalarType | GetExtentInMM (int direction) const |
| | Get the extent of the bounding box in mm along the specified direction. More...
|
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| Vector3D | GetAxisVector (unsigned int direction) const |
| | Get a vector along the bounding box in the specified direction in mm. More...
|
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| virtual bool | Is2DConvertable () |
| | Check if this geometry can be converted to 2D without information loss. More...
|
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| Point3D | GetCenter () const |
| | Get the center of the bounding box in world coordinates (mm). More...
|
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| double | GetDiagonalLength2 () const |
| | Get the squared length of the bounding-box diagonal in mm. More...
|
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| double | GetDiagonalLength () const |
| | Get the length of the bounding-box diagonal in mm. More...
|
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| Point3D | GetCornerPoint (int id) const |
| | Get the position of corner number id in world coordinates. More...
|
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| Point3D | GetCornerPoint (bool xFront=true, bool yFront=true, bool zFront=true) const |
| | Get the position of a corner in world coordinates. More...
|
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| void | SetExtentInMM (int direction, ScalarType extentInMM) |
| | Set the extent of the bounding box in mm along the specified direction. More...
|
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| bool | IsInside (const mitk::Point3D &p) const |
| | Test whether a point (world coordinates, mm) lies inside the bounding box. More...
|
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| bool | IsIndexInside (const mitk::Point3D &index) const |
| | Test whether a point in continuous index coordinates lies inside the bounding box. More...
|
| |
| template<unsigned int VIndexDimension> |
| bool | IsIndexInside (const itk::Index< VIndexDimension > &index) const |
| | Test whether a discrete ITK index lies inside the bounding box. More...
|
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| Point3D | ClampPoint (const Point3D &point) const |
| | Clamp a point to lie within the geometry's world-coordinate bounds. More...
|
| |
| virtual void | ChangeImageGeometryConsideringOriginOffset (const bool isAnImageGeometry) |
| | Switch between image geometry and normal geometry with origin correction. More...
|
| |
| virtual bool | GetImageGeometry () const |
| | Query whether this geometry refers to an image. More...
|
| |
| virtual void | SetImageGeometry (bool _arg) |
| | Define that this BaseGeometry refers to an image. More...
|
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| virtual void | ImageGeometryOn () |
| | Toggle macro for ImageGeometry (ImageGeometryOn/ImageGeometryOff). More...
|
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| virtual void | ImageGeometryOff () |
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| const GeometryTransformHolder * | GetGeometryTransformHolder () const |
| | Get the internal GeometryTransformHolder. More...
|
| |
| void | MapAxesToOrientations (int axes[]) const |
| | Map geometry axes to anatomical orientations (sagittal, coronal, axial). More...
|
| |
| | itkTypeMacroNoParent (OperationActor) virtual ~OperationActor() |
| |
