Filter that generates surface meshes from a MultiLabelSegmentation image. More...

#include <mitkLabelSetImageToSurfaceFilter.h>

Inheritance diagram for mitk::LabelSetImageToSurfaceFilter:

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Collaboration diagram for mitk::LabelSetImageToSurfaceFilter:

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Public Types
typedef MultiLabelSegmentation::LabelValueType	LabelType
	Type for label pixel values. More...

typedef std::map< LabelType, unsigned long >	LabelMapType
	Map from label value to count/size. More...

typedef std::map< unsigned int, LabelType >	IndexToLabelMapType
	Map from output index to label value. More...

Public Types inherited from mitk::SurfaceSource
typedef Surface	OutputType

Public Types inherited from mitk::BaseDataSource
typedef BaseData	OutputType
	Output data type. More...

typedef itk::DataObject::DataObjectIdentifierType	DataObjectIdentifierType
	Identifier type for named data objects. More...

Public Member Functions
	mitkClassMacro (LabelSetImageToSurfaceFilter, SurfaceSource)

const mitk::Image *	GetInput (void)
	Returns a const pointer to the input image. More...

virtual void	SetInput (const mitk::Image *image)

virtual void	SetGenerateAllLabels (bool _arg)

virtual bool	GetGenerateAllLabels ()

virtual void	GenerateAllLabelsOn ()

virtual void	GenerateAllLabelsOff ()

virtual void	SetRequestedLabel (int _arg)

virtual int	GetRequestedLabel ()

virtual void	SetBackgroundLabel (int _arg)

virtual int	GetBackgroundLabel ()

virtual void	SetUseSmoothing (int _arg)

virtual void	SetSigma (float _arg)

Public Member Functions inherited from mitk::SurfaceSource
	mitkClassMacro (SurfaceSource, BaseDataSource)

Pointer	Clone () const

mitkBaseDataSourceGetOutputDeclarations itk::DataObject::Pointer	MakeOutput (DataObjectPointerArraySizeType idx) override
	Allocate a new output object and return it. More...

itk::DataObject::Pointer	MakeOutput (const DataObjectIdentifierType &name) override
	Allocate a new output object by name. More...

Public Member Functions inherited from mitk::BaseDataSource
	mitkClassMacroItkParent (BaseDataSource, itk::ProcessObject)

OutputType *	GetOutput ()

const OutputType *	GetOutput () const

OutputType *	GetOutput (DataObjectPointerArraySizeType idx)

const OutputType *	GetOutput (DataObjectPointerArraySizeType idx) const

virtual void	GraftOutput (OutputType *output)
	Graft the specified BaseData onto this BaseDataSource's output. More...

virtual void	GraftOutput (const DataObjectIdentifierType &key, OutputType *output)
	Graft the specified base data object onto a named output. More...

virtual void	GraftNthOutput (unsigned int idx, OutputType *output)
	Graft the specified base data object onto this BaseDataSource's idx'th output. More...

bool	Updating () const
	Check whether the pipeline is currently executing. More...

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from mitk::SurfaceSource
static Pointer	New ()

Protected Member Functions
	LabelSetImageToSurfaceFilter ()

	~LabelSetImageToSurfaceFilter () override

template<class T1 , class T2 , class T3 >
void	mitkVtkLinearTransformPoint (T1 matrix[4][4], T2 in[3], T3 out[3])

template<typename TPixel , unsigned int VImageDimension>
void	InternalProcessing (const itk::Image< TPixel, VImageDimension > input, mitk::Surface surface)

void	GenerateData () override

void	GenerateOutputInformation () override

Protected Member Functions inherited from mitk::SurfaceSource
	SurfaceSource ()

	~SurfaceSource () override

Protected Member Functions inherited from mitk::BaseDataSource
	BaseDataSource ()
	Constructor. More...

	~BaseDataSource () override
	Destructor. More...

Protected Attributes
mitk::Image::Pointer	m_ResultImage

bool	m_GenerateAllLabels

int	m_RequestedLabel

int	m_BackgroundLabel

int	m_UseSmoothing

float	m_Sigma

LabelMapType	m_AvailableLabels

IndexToLabelMapType	m_IndexToLabels

mitk::Vector3D	m_InputImageSpacing

Additional Inherited Members
Static Protected Member Functions inherited from mitk::BaseDataSource
static Pointer	New ()

Detailed Description

Filter that generates surface meshes from a MultiLabelSegmentation image.

This filter extracts label regions from a multi-label segmentation image and converts them into VTK surface meshes using marching cubes. It supports extracting a single label or all labels at once.

To extract surfaces for all available labels, call GenerateAllLabelsOn().

See also: MultiLabelSegmentation, SurfaceSource, LabelSetImageToSurfaceThreadedFilter

Definition at line 40 of file mitkLabelSetImageToSurfaceFilter.h.

Member Typedef Documentation

◆ IndexToLabelMapType

typedef std::map<unsigned int, LabelType> mitk::LabelSetImageToSurfaceFilter::IndexToLabelMapType

Map from output index to label value.

Definition at line 54 of file mitkLabelSetImageToSurfaceFilter.h.

◆ LabelMapType

typedef std::map<LabelType, unsigned long> mitk::LabelSetImageToSurfaceFilter::LabelMapType

Map from label value to count/size.

Definition at line 51 of file mitkLabelSetImageToSurfaceFilter.h.

◆ LabelType

typedef MultiLabelSegmentation::LabelValueType mitk::LabelSetImageToSurfaceFilter::LabelType

Type for label pixel values.

Definition at line 48 of file mitkLabelSetImageToSurfaceFilter.h.

Constructor & Destructor Documentation

◆ LabelSetImageToSurfaceFilter()

mitk::LabelSetImageToSurfaceFilter::LabelSetImageToSurfaceFilter ( )

protected

◆ ~LabelSetImageToSurfaceFilter()

mitk::LabelSetImageToSurfaceFilter::~LabelSetImageToSurfaceFilter ( )

overrideprotected

Member Function Documentation

◆ GenerateAllLabelsOff()

virtual void mitk::LabelSetImageToSurfaceFilter::GenerateAllLabelsOff ( )

virtual

◆ GenerateAllLabelsOn()

virtual void mitk::LabelSetImageToSurfaceFilter::GenerateAllLabelsOn ( )

virtual

◆ GenerateData()

void mitk::LabelSetImageToSurfaceFilter::GenerateData ( )

overrideprotected

◆ GenerateOutputInformation()

void mitk::LabelSetImageToSurfaceFilter::GenerateOutputInformation ( )

overrideprotected

◆ GetBackgroundLabel()

virtual int mitk::LabelSetImageToSurfaceFilter::GetBackgroundLabel ( )

virtual

Gets the label value of the background. No surface will be generated for this label.

Returns: the label of the background, by default 0

◆ GetGenerateAllLabels()

virtual bool mitk::LabelSetImageToSurfaceFilter::GetGenerateAllLabels ( )

virtual

Returns: if all labels or only a specific label should be extracted.

◆ GetInput()

const mitk::Image* mitk::LabelSetImageToSurfaceFilter::GetInput ( void )

Returns a const pointer to the input image.

Returns: Const pointer to the input Image, or nullptr if not set.

◆ GetRequestedLabel()

virtual int mitk::LabelSetImageToSurfaceFilter::GetRequestedLabel ( )

virtual

Returns the label you want to extract. This method only has an effect, if GenerateAllLabels() is set to false

Returns: the label to extract, by default 1

◆ InternalProcessing()

template<typename TPixel , unsigned int VImageDimension>

void mitk::LabelSetImageToSurfaceFilter::InternalProcessing	(	const itk::Image< TPixel, VImageDimension > *	input,
		mitk::Surface *	surface
	)

protected

◆ mitkClassMacro()

mitk::LabelSetImageToSurfaceFilter::mitkClassMacro	(	LabelSetImageToSurfaceFilter	,
		SurfaceSource
	)

◆ mitkVtkLinearTransformPoint()

template<class T1 , class T2 , class T3 >

void mitk::LabelSetImageToSurfaceFilter::mitkVtkLinearTransformPoint	(	T1	matrix[4][4],
		T2	in[3],
		T3	out[3]
	)

inlineprotected

Transforms a point by a 4x4 matrix

Definition at line 128 of file mitkLabelSetImageToSurfaceFilter.h.

◆ New()

static Pointer mitk::LabelSetImageToSurfaceFilter::New ( )

static

◆ SetBackgroundLabel()

virtual void mitk::LabelSetImageToSurfaceFilter::SetBackgroundLabel ( int _arg )

virtual

Sets the label value of the background. No surface will be generated for this label.

Parameters

_arg	the label of the background, by default 0

◆ SetGenerateAllLabels()

virtual void mitk::LabelSetImageToSurfaceFilter::SetGenerateAllLabels ( bool _arg )

virtual

Set whether you want to extract all labesl (true) or a single one.

◆ SetInput()

virtual void mitk::LabelSetImageToSurfaceFilter::SetInput ( const mitk::Image * image )

virtual

◆ SetRequestedLabel()

virtual void mitk::LabelSetImageToSurfaceFilter::SetRequestedLabel ( int _arg )

virtual

Set the label you want to extract. This method only has an effect, if GenerateAllLabels() is set to false

Parameters

_arg	the label to extract, by default 1

◆ SetSigma()

virtual void mitk::LabelSetImageToSurfaceFilter::SetSigma ( float _arg )

virtual

Sets the Sigma used in the gaussian smoothing

◆ SetUseSmoothing()

virtual void mitk::LabelSetImageToSurfaceFilter::SetUseSmoothing ( int _arg )

virtual

Sets whether to provide a smoothed surface

Member Data Documentation

◆ m_AvailableLabels

LabelMapType mitk::LabelSetImageToSurfaceFilter::m_AvailableLabels

protected

Definition at line 153 of file mitkLabelSetImageToSurfaceFilter.h.

◆ m_BackgroundLabel

int mitk::LabelSetImageToSurfaceFilter::m_BackgroundLabel

protected

Definition at line 147 of file mitkLabelSetImageToSurfaceFilter.h.

◆ m_GenerateAllLabels

bool mitk::LabelSetImageToSurfaceFilter::m_GenerateAllLabels

protected

Definition at line 143 of file mitkLabelSetImageToSurfaceFilter.h.

◆ m_IndexToLabels

IndexToLabelMapType mitk::LabelSetImageToSurfaceFilter::m_IndexToLabels

protected

Definition at line 155 of file mitkLabelSetImageToSurfaceFilter.h.

◆ m_InputImageSpacing

mitk::Vector3D mitk::LabelSetImageToSurfaceFilter::m_InputImageSpacing

protected

Definition at line 157 of file mitkLabelSetImageToSurfaceFilter.h.

◆ m_RequestedLabel

int mitk::LabelSetImageToSurfaceFilter::m_RequestedLabel

protected

Definition at line 145 of file mitkLabelSetImageToSurfaceFilter.h.

◆ m_ResultImage

mitk::Image::Pointer mitk::LabelSetImageToSurfaceFilter::m_ResultImage

protected

Definition at line 138 of file mitkLabelSetImageToSurfaceFilter.h.

◆ m_Sigma

float mitk::LabelSetImageToSurfaceFilter::m_Sigma

protected

Definition at line 151 of file mitkLabelSetImageToSurfaceFilter.h.

◆ m_UseSmoothing

int mitk::LabelSetImageToSurfaceFilter::m_UseSmoothing

protected

Definition at line 149 of file mitkLabelSetImageToSurfaceFilter.h.

The documentation for this class was generated from the following file:

mitkLabelSetImageToSurfaceFilter.h

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ IndexToLabelMapType

◆ LabelMapType

◆ LabelType

Constructor & Destructor Documentation

◆ LabelSetImageToSurfaceFilter()

◆ ~LabelSetImageToSurfaceFilter()

Member Function Documentation

◆ GenerateAllLabelsOff()

◆ GenerateAllLabelsOn()

◆ GenerateData()

◆ GenerateOutputInformation()

◆ GetBackgroundLabel()

◆ GetGenerateAllLabels()

◆ GetInput()

◆ GetRequestedLabel()

◆ InternalProcessing()

◆ mitkClassMacro()

◆ mitkVtkLinearTransformPoint()

◆ New()

◆ SetBackgroundLabel()

◆ SetGenerateAllLabels()

◆ SetInput()

◆ SetRequestedLabel()

◆ SetSigma()

◆ SetUseSmoothing()

Member Data Documentation

◆ m_AvailableLabels

◆ m_BackgroundLabel

◆ m_GenerateAllLabels

◆ m_IndexToLabels

◆ m_InputImageSpacing

◆ m_RequestedLabel

◆ m_ResultImage

◆ m_Sigma

◆ m_UseSmoothing