mitkLabelSetImageToSurfaceFilter.h

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/*============================================================================
 
The Medical Imaging Interaction Toolkit (MITK)
 
Copyright (c) German Cancer Research Center (DKFZ)
All rights reserved.
 
Use of this source code is governed by a 3-clause BSD license that can be
found in the LICENSE file.
 
============================================================================*/
 
#ifndef mitkLabelSetImageToSurfaceFilter_h
#define mitkLabelSetImageToSurfaceFilter_h
 
#include <MitkMultilabelExports.h>
#include <mitkLabelSetImage.h>
#include <mitkSurface.h>
#include <mitkSurfaceSource.h>
 
#include <vtkMatrix4x4.h>
 
#include <itkImage.h>
 
#include <map>
 
namespace mitk
{
  class MITKMULTILABEL_EXPORT LabelSetImageToSurfaceFilter : public SurfaceSource
  {
  public:
    mitkClassMacro(LabelSetImageToSurfaceFilter, SurfaceSource);
 
    itkNewMacro(Self);
 
    typedef MultiLabelSegmentation::LabelValueType LabelType;
 
    typedef std::map<LabelType, unsigned long> LabelMapType;
 
    typedef std::map<unsigned int, LabelType> IndexToLabelMapType;
 
    const mitk::Image *GetInput(void);
 
    using ProcessObject::SetInput;
    virtual void SetInput(const mitk::Image *image);
 
    //   virtual void SetObserver(mitk::ProcessObserver::Pointer observer);
 
    itkSetMacro(GenerateAllLabels, bool);
 
    itkGetMacro(GenerateAllLabels, bool);
    itkBooleanMacro(GenerateAllLabels);
 
    itkSetMacro(RequestedLabel, int);
 
    itkGetMacro(RequestedLabel, int);
 
    itkSetMacro(BackgroundLabel, int);
 
    itkGetMacro(BackgroundLabel, int);
 
    itkSetMacro(UseSmoothing, int);
 
    itkSetMacro(Sigma, float);
 
  protected:
    LabelSetImageToSurfaceFilter();
 
    ~LabelSetImageToSurfaceFilter() override;
 
    template <class T1, class T2, class T3>
    inline void mitkVtkLinearTransformPoint(T1 matrix[4][4], T2 in[3], T3 out[3])
    {
      T3 x = matrix[0][0] * in[0] + matrix[0][1] * in[1] + matrix[0][2] * in[2] + matrix[0][3];
      T3 y = matrix[1][0] * in[0] + matrix[1][1] * in[1] + matrix[1][2] * in[2] + matrix[1][3];
      T3 z = matrix[2][0] * in[0] + matrix[2][1] * in[1] + matrix[2][2] * in[2] + matrix[2][3];
      out[0] = x;
      out[1] = y;
      out[2] = z;
    }
 
    mitk::Image::Pointer m_ResultImage;
 
    template <typename TPixel, unsigned int VImageDimension>
    void InternalProcessing(const itk::Image<TPixel, VImageDimension> *input, mitk::Surface *surface);
 
    bool m_GenerateAllLabels;
 
    int m_RequestedLabel;
 
    int m_BackgroundLabel;
 
    int m_UseSmoothing;
 
    float m_Sigma;
 
    LabelMapType m_AvailableLabels;
 
    IndexToLabelMapType m_IndexToLabels;
 
    mitk::Vector3D m_InputImageSpacing;
 
    void GenerateData() override;
 
    void GenerateOutputInformation() override;
 
    //  mitk::ProcessObserver::Pointer m_Observer;
  };
 
} // end of namespace mitk
 
#endif