Filter that creates a distance image from contour surface points using Radial Basis Function interpolation. More...

#include <mitkCreateDistanceImageFromSurfaceFilter.h>

Inheritance diagram for mitk::CreateDistanceImageFromSurfaceFilter:

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Collaboration diagram for mitk::CreateDistanceImageFromSurfaceFilter:

[legend]

Public Types
typedef vnl_vector_fixed< double, 3 >	PointType

typedef itk::Image< double, 3 >	DistanceImageType

typedef DistanceImageType::IndexType	IndexType

typedef std::vector< PointType >	NormalList

typedef std::vector< PointType >	CenterList

typedef std::vector< Surface::Pointer >	SurfaceList

Public Types inherited from mitk::ImageSource
typedef mitk::Image	OutputImageType
	Some convenient typedefs. More...

typedef OutputImageType	OutputType

typedef OutputImageType::Pointer	OutputImagePointer

typedef SlicedData::RegionType	OutputImageRegionType

Public Types inherited from mitk::BaseDataSource
typedef BaseData	OutputType
	Output data type. More...

typedef itk::DataObject::DataObjectIdentifierType	DataObjectIdentifierType
	Identifier type for named data objects. More...

Public Member Functions
	mitkClassMacro (CreateDistanceImageFromSurfaceFilter, ImageSource)

Pointer	Clone () const

virtual double	GetDistanceImageSpacing ()

virtual void	SetInput (const mitk::Surface *surface)

virtual void	SetInput (unsigned int idx, const mitk::Surface *surface)

virtual const mitk::Surface *	GetInput ()

virtual const mitk::Surface *	GetInput (unsigned int idx)

virtual void	RemoveInputs (mitk::Surface *input)

virtual void	SetDistanceImageVolume (unsigned int _arg)
	Set the size of the output distance image. The size is specified by the image's volume (i.e. in this case how many pixels are enclosed by the image) If non is set, the volume will be 500000 pixels. More...

void	PrintEquationSystem ()

void	Reset ()

void	SetUseProgressBar (bool)
	Set whether the mitkProgressBar should be used. More...

void	SetProgressStepSize (unsigned int stepSize)
	Set the stepsize which the progress bar should proceed. More...

void	SetReferenceImage (itk::ImageBase< 3 >::Pointer referenceImage)

Public Member Functions inherited from mitk::ImageSource
	mitkClassMacro (ImageSource, BaseDataSource)

Pointer	Clone () const

mitkBaseDataSourceGetOutputDeclarations itk::DataObject::Pointer	MakeOutput (DataObjectPointerArraySizeType idx) override
	Get the output data of this image source object. More...

itk::DataObject::Pointer	MakeOutput (const DataObjectIdentifierType &name) override

virtual vtkImageData *	GetVtkImageData ()
	Get the output as VTK image data (non-const version). More...

virtual const vtkImageData *	GetVtkImageData () const
	Get the output as VTK image data (const version). More...

Public Member Functions inherited from mitk::BaseDataSource
	mitkClassMacroItkParent (BaseDataSource, itk::ProcessObject)

OutputType *	GetOutput ()

const OutputType *	GetOutput () const

OutputType *	GetOutput (DataObjectPointerArraySizeType idx)

const OutputType *	GetOutput (DataObjectPointerArraySizeType idx) const

virtual void	GraftOutput (OutputType *output)
	Graft the specified BaseData onto this BaseDataSource's output. More...

virtual void	GraftOutput (const DataObjectIdentifierType &key, OutputType *output)
	Graft the specified base data object onto a named output. More...

virtual void	GraftNthOutput (unsigned int idx, OutputType *output)
	Graft the specified base data object onto this BaseDataSource's idx'th output. More...

bool	Updating () const
	Check whether the pipeline is currently executing. More...

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from mitk::ImageSource
static Pointer	New ()
	Method for creation through the object factory. More...

Protected Member Functions
	CreateDistanceImageFromSurfaceFilter ()

	~CreateDistanceImageFromSurfaceFilter () override

void	GenerateData () override

void	GenerateOutputInformation () override

Protected Member Functions inherited from mitk::ImageSource
	ImageSource ()

	~ImageSource () override

void	GenerateData () override
	A version of GenerateData() specific for image processing filters. More...

virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, itk::ThreadIdType threadId)
	If an imaging filter can be implemented as a multithreaded algorithm, the filter will provide an implementation of ThreadedGenerateData(). More...

void	PrepareOutputs () override
	This method is intentionally left blank. More...

virtual void	AllocateOutputs ()
	The GenerateData method normally allocates the buffers for all of the outputs of a filter. More...

virtual void	BeforeThreadedGenerateData ()
	If an imaging filter needs to perform processing after the buffer has been allocated but before threads are spawned, the filter can provide an implementation for BeforeThreadedGenerateData(). More...

virtual void	AfterThreadedGenerateData ()
	If an imaging filter needs to perform processing after all processing threads have completed, the filter can provide an implementation for AfterThreadedGenerateData(). More...

virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int num, OutputImageRegionType &splitRegion)
	Split the output's RequestedRegion into "num" pieces, returning region "i" as "splitRegion". More...

Protected Member Functions inherited from mitk::BaseDataSource
	BaseDataSource ()
	Constructor. More...

	~BaseDataSource () override
	Destructor. More...

Additional Inherited Members
Static Protected Member Functions inherited from mitk::ImageSource
static itk::ITK_THREAD_RETURN_TYPE	ThreaderCallback (void *arg)
	Static function used as a "callback" by the MultiThreader. More...

Static Protected Member Functions inherited from mitk::BaseDataSource
static Pointer	New ()

Detailed Description

Filter that creates a distance image from contour surface points using Radial Basis Function interpolation.

Given a set of contour edge points with associated normals (as mitk::Surface inputs), this filter computes an implicit distance function via Radial Basis Function (RBF) interpolation and samples it into a 3D distance image.

The distance function has the following properties:

Points inside the surface yield negative values.
Points outside the surface yield positive values.
Points on the surface yield zero.

The zero level set of the resulting distance image represents the interpolated surface, which can be extracted using e.g. marching cubes.

The distance image always has isotropic spacing. Its total number of pixels can be adjusted via SetDistanceImageVolume() (default: 500000).

Precondition: Each input surface must contain contour edge points with normals stored in the cell data.

See also: ComputeContourSetNormalsFilter, ReduceContourSetFilter, SurfaceInterpolationController

Definition at line 52 of file mitkCreateDistanceImageFromSurfaceFilter.h.

Member Typedef Documentation

◆ CenterList

typedef std::vector<PointType> mitk::CreateDistanceImageFromSurfaceFilter::CenterList

Definition at line 61 of file mitkCreateDistanceImageFromSurfaceFilter.h.

◆ DistanceImageType

typedef itk::Image<double, 3> mitk::CreateDistanceImageFromSurfaceFilter::DistanceImageType

Definition at line 57 of file mitkCreateDistanceImageFromSurfaceFilter.h.

◆ IndexType

typedef DistanceImageType::IndexType mitk::CreateDistanceImageFromSurfaceFilter::IndexType

Definition at line 58 of file mitkCreateDistanceImageFromSurfaceFilter.h.

◆ NormalList

typedef std::vector<PointType> mitk::CreateDistanceImageFromSurfaceFilter::NormalList

Definition at line 60 of file mitkCreateDistanceImageFromSurfaceFilter.h.

◆ PointType

typedef vnl_vector_fixed<double, 3> mitk::CreateDistanceImageFromSurfaceFilter::PointType

Definition at line 55 of file mitkCreateDistanceImageFromSurfaceFilter.h.

◆ SurfaceList

typedef std::vector<Surface::Pointer> mitk::CreateDistanceImageFromSurfaceFilter::SurfaceList

Definition at line 63 of file mitkCreateDistanceImageFromSurfaceFilter.h.

Constructor & Destructor Documentation

◆ CreateDistanceImageFromSurfaceFilter()

mitk::CreateDistanceImageFromSurfaceFilter::CreateDistanceImageFromSurfaceFilter ( )

protected

◆ ~CreateDistanceImageFromSurfaceFilter()

mitk::CreateDistanceImageFromSurfaceFilter::~CreateDistanceImageFromSurfaceFilter ( )

overrideprotected

Member Function Documentation

◆ Clone()

Pointer mitk::CreateDistanceImageFromSurfaceFilter::Clone ( ) const

◆ GenerateData()

void mitk::CreateDistanceImageFromSurfaceFilter::GenerateData ( )

overrideprotected

◆ GenerateOutputInformation()

void mitk::CreateDistanceImageFromSurfaceFilter::GenerateOutputInformation ( )

overrideprotected

◆ GetDistanceImageSpacing()

virtual double mitk::CreateDistanceImageFromSurfaceFilter::GetDistanceImageSpacing ( )

virtual

◆ GetInput() [1/2]

virtual const mitk::Surface* mitk::CreateDistanceImageFromSurfaceFilter::GetInput ( )

virtual

◆ GetInput() [2/2]

virtual const mitk::Surface* mitk::CreateDistanceImageFromSurfaceFilter::GetInput ( unsigned int idx )

virtual

◆ mitkClassMacro()

mitk::CreateDistanceImageFromSurfaceFilter::mitkClassMacro	(	CreateDistanceImageFromSurfaceFilter	,
		ImageSource
	)

◆ New()

static Pointer mitk::CreateDistanceImageFromSurfaceFilter::New ( )

static

◆ PrintEquationSystem()

void mitk::CreateDistanceImageFromSurfaceFilter::PrintEquationSystem ( )

◆ RemoveInputs()

virtual void mitk::CreateDistanceImageFromSurfaceFilter::RemoveInputs ( mitk::Surface * input )

virtual

◆ Reset()

void mitk::CreateDistanceImageFromSurfaceFilter::Reset ( )

◆ SetDistanceImageVolume()

virtual void mitk::CreateDistanceImageFromSurfaceFilter::SetDistanceImageVolume ( unsigned int _arg )

virtual

Set the size of the output distance image. The size is specified by the image's volume (i.e. in this case how many pixels are enclosed by the image) If non is set, the volume will be 500000 pixels.

◆ SetInput() [1/2]

virtual void mitk::CreateDistanceImageFromSurfaceFilter::SetInput ( const mitk::Surface * surface )

virtual

◆ SetInput() [2/2]

virtual void mitk::CreateDistanceImageFromSurfaceFilter::SetInput	(	unsigned int	idx,
		const mitk::Surface *	surface
	)

virtual

◆ SetProgressStepSize()

void mitk::CreateDistanceImageFromSurfaceFilter::SetProgressStepSize ( unsigned int stepSize )

Set the stepsize which the progress bar should proceed.

Parameter The stepsize for progressing

◆ SetReferenceImage()

void mitk::CreateDistanceImageFromSurfaceFilter::SetReferenceImage ( itk::ImageBase< 3 >::Pointer referenceImage )

◆ SetUseProgressBar()

void mitk::CreateDistanceImageFromSurfaceFilter::SetUseProgressBar ( bool )

Set whether the mitkProgressBar should be used.

Parameter true for using the progress bar, false otherwise

The documentation for this class was generated from the following file:

mitkCreateDistanceImageFromSurfaceFilter.h

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ CenterList

◆ DistanceImageType

◆ IndexType

◆ NormalList

◆ PointType

◆ SurfaceList

Constructor & Destructor Documentation

◆ CreateDistanceImageFromSurfaceFilter()

◆ ~CreateDistanceImageFromSurfaceFilter()

Member Function Documentation

◆ Clone()

◆ GenerateData()

◆ GenerateOutputInformation()

◆ GetDistanceImageSpacing()

◆ GetInput() [1/2]

◆ GetInput() [2/2]

◆ mitkClassMacro()

◆ New()

◆ PrintEquationSystem()

◆ RemoveInputs()

◆ Reset()

◆ SetDistanceImageVolume()

◆ SetInput() [1/2]

◆ SetInput() [2/2]

◆ SetProgressStepSize()

◆ SetReferenceImage()

◆ SetUseProgressBar()