Standard three-dimensional geometry. More...

#include <mitkGeometry3D.h>

Inheritance diagram for mitk::Geometry3D:

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Collaboration diagram for mitk::Geometry3D:

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Public Types
typedef itk::QuaternionRigidTransform< ScalarType >	QuaternionTransformType
	Quaternion rigid transform type (for rotation representations). More...

typedef QuaternionTransformType::VnlQuaternionType	VnlQuaternionType
	VNL quaternion type derived from QuaternionTransformType. More...

Public Types inherited from mitk::BaseGeometry
typedef GeometryTransformHolder::TransformType	TransformType
	Affine transform type used for index-to-world mapping. More...

typedef itk::BoundingBox< unsigned long, 3, ScalarType >	BoundingBoxType
	3D bounding box type parameterized with ScalarType. More...

typedef BoundingBoxType::BoundsArrayType	BoundsArrayType
	Fixed-size array of six ScalarType values representing axis-aligned bounds [xmin,xmax,ymin,ymax,zmin,zmax]. More...

typedef BoundingBoxType::Pointer	BoundingBoxPointer
	Smart-pointer type for BoundingBoxType. More...

Public Member Functions
	mitkClassMacro (Geometry3D, mitk::BaseGeometry)

	mitkNewMacro1Param (Self, const Self &)

Pointer	Clone () const

Public Member Functions inherited from mitk::BaseGeometry
	mitkClassMacroItkParent (BaseGeometry, itk::Object)

Pointer	Clone () const

Point3D	GetOrigin () const
	Get the origin of the geometry in world coordinates (mm). More...

void	SetOrigin (const Point3D &origin)
	Set the origin of the geometry in world coordinates (mm). More...

mitk::Vector3D	GetSpacing () const
	Get the spacing (voxel size) in mm per unit for each axis. More...

void	SetSpacing (const mitk::Vector3D &aSpacing, bool enforceSetSpacing=false)
	Set the spacing (voxel size) for each axis. More...

VnlVector	GetOriginVnl () const
	Get the origin as a VNL vector. More...

virtual unsigned int	GetFrameOfReferenceID () const
	Get the DICOM FrameOfReferenceID referring to the world coordinate system. More...

virtual void	SetFrameOfReferenceID (unsigned int _arg)
	Set the DICOM FrameOfReferenceID referring to the world coordinate system. More...

virtual unsigned long	GetIndexToWorldTransformLastModified () const
	Get the last-modified timestamp of the IndexToWorldTransform. More...

void	Modified () const override
	Overloaded Modified() to support the ModifiedLock mechanism. More...

virtual bool	IsValid () const
	Check whether this geometry is in a valid state. More...

void	Initialize ()
	Initialize the geometry to default values. More...

void	InitializeGeometry (Self *newGeometry) const
	Copy the essential geometry properties into another instance. More...

mitk::AffineTransform3D *	GetIndexToWorldTransform ()
	Get the affine transform that maps index coordinates to world coordinates. More...

const mitk::AffineTransform3D *	GetIndexToWorldTransform () const
	Get the affine transform that maps index coordinates to world coordinates (const). More...

void	SetIndexToWorldTransform (mitk::AffineTransform3D *transform)
	Set the affine transform for index-to-world coordinate mapping. More...

void	SetIndexToWorldTransformByVtkMatrix (vtkMatrix4x4 *vtkmatrix)
	Set the IndexToWorldTransform via a vtkMatrix4x4. More...

void	SetIndexToWorldTransformWithoutChangingSpacing (mitk::AffineTransform3D *transform)
	Set the IndexToWorldTransform while preserving the current spacing. More...

void	SetIndexToWorldTransformByVtkMatrixWithoutChangingSpacing (vtkMatrix4x4 *vtkmatrix)
	Set the IndexToWorldTransform via a vtkMatrix4x4 while preserving spacing. More...

vtkMatrix4x4 *	GetVtkMatrix ()
	Get the IndexToWorldTransform as a 4x4 VTK matrix. More...

const vtkMatrix4x4 *	GetVtkMatrix () const
	Get the IndexToWorldTransform as a 4x4 VTK matrix (const). More...

vtkLinearTransform *	GetVtkTransform () const
	Get the IndexToWorldTransform as a vtkLinearTransform. More...

void	SetIdentity ()
	Reset the geometry to identity. More...

void	Compose (const TransformType *other, bool pre=false)
	Compose the IndexToWorldTransform with another transform. More...

void	Compose (const vtkMatrix4x4 *vtkmatrix, bool pre=false)
	Compose the IndexToWorldTransform with a vtkMatrix4x4. More...

void	Translate (const Vector3D &vector)
	Translate the origin by a given vector. More...

void	ExecuteOperation (Operation *operation) override
	Execute an affine operation (translate, rotate, scale) on this geometry. More...

void	WorldToIndex (const mitk::Point3D &pt_mm, mitk::Point3D &pt_units) const
	Convert world coordinates (mm) of a point to continuous index coordinates. More...

void	WorldToIndex (const mitk::Vector3D &vec_mm, mitk::Vector3D &vec_units) const
	Convert world coordinates (mm) of a vector to continuous index coordinates. More...

template<unsigned int VIndexDimension>
void	WorldToIndex (const mitk::Point3D &pt_mm, itk::Index< VIndexDimension > &index) const
	Convert world coordinates (mm) of a point to discrete (integer) index coordinates. More...

void	IndexToWorld (const mitk::Vector3D &vec_units, mitk::Vector3D &vec_mm) const
	Convert index coordinates of a vector to world coordinates (mm). More...

void	IndexToWorld (const mitk::Point3D &pt_units, mitk::Point3D &pt_mm) const
	Convert continuous or discrete index coordinates of a point to world coordinates (mm). More...

template<unsigned int VIndexDimension>
void	IndexToWorld (const itk::Index< VIndexDimension > &index, mitk::Point3D &pt_mm) const
	Convert discrete (itk::Index) index coordinates of a point to world coordinates (mm). More...

template<class TCoordRep >
void	ItkPhysicalPointToWorld (const itk::Point< TCoordRep, 3 > &itkPhysicalPoint, mitk::Point3D &pt_mm) const
	Convert an ITK physical point to MITK world coordinates. More...

template<class TCoordRep >
void	WorldToItkPhysicalPoint (const mitk::Point3D &pt_mm, itk::Point< TCoordRep, 3 > &itkPhysicalPoint) const
	Convert MITK world coordinates to ITK physical coordinates. More...

virtual const BoundingBoxType *	GetBoundingBox ()
	Get the bounding box in index/unit coordinates. More...

const BoundsArrayType	GetBounds () const
	Get the bounding box bounds as a BoundsArrayType in index/unit coordinates. More...

void	SetBounds (const BoundsArrayType &bounds)
	Set the bounding box in index/unit coordinates. More...

void	SetFloatBounds (const float bounds[6])
	Set the bounding box via a float array. More...

void	SetFloatBounds (const double bounds[6])
	Set the bounding box via a double array. More...

VnlVector	GetMatrixColumn (unsigned int direction) const
	Get a column of the IndexToWorldTransform matrix as a VnlVector. More...

mitk::BoundingBox::Pointer	CalculateBoundingBoxRelativeToTransform (const mitk::AffineTransform3D *transform) const
	Calculate a bounding box relative to a given transform. More...

ScalarType	GetExtent (unsigned int direction) const
	Set the time bounds (in ms) More...

ScalarType	GetExtentInMM (int direction) const
	Get the extent of the bounding box in mm along the specified direction. More...

Vector3D	GetAxisVector (unsigned int direction) const
	Get a vector along the bounding box in the specified direction in mm. More...

virtual bool	Is2DConvertable ()
	Check if this geometry can be converted to 2D without information loss. More...

Point3D	GetCenter () const
	Get the center of the bounding box in world coordinates (mm). More...

double	GetDiagonalLength2 () const
	Get the squared length of the bounding-box diagonal in mm. More...

double	GetDiagonalLength () const
	Get the length of the bounding-box diagonal in mm. More...

Point3D	GetCornerPoint (int id) const
	Get the position of corner number id in world coordinates. More...

Point3D	GetCornerPoint (bool xFront=true, bool yFront=true, bool zFront=true) const
	Get the position of a corner in world coordinates. More...

void	SetExtentInMM (int direction, ScalarType extentInMM)
	Set the extent of the bounding box in mm along the specified direction. More...

bool	IsInside (const mitk::Point3D &p) const
	Test whether a point (world coordinates, mm) lies inside the bounding box. More...

bool	IsIndexInside (const mitk::Point3D &index) const
	Test whether a point in continuous index coordinates lies inside the bounding box. More...

template<unsigned int VIndexDimension>
bool	IsIndexInside (const itk::Index< VIndexDimension > &index) const
	Test whether a discrete ITK index lies inside the bounding box. More...

Point3D	ClampPoint (const Point3D &point) const
	Clamp a point to lie within the geometry's world-coordinate bounds. More...

virtual void	ChangeImageGeometryConsideringOriginOffset (const bool isAnImageGeometry)
	Switch between image geometry and normal geometry with origin correction. More...

virtual bool	GetImageGeometry () const
	Query whether this geometry refers to an image. More...

virtual void	SetImageGeometry (bool _arg)
	Define that this BaseGeometry refers to an image. More...

virtual void	ImageGeometryOn ()
	Toggle macro for ImageGeometry (ImageGeometryOn/ImageGeometryOff). More...

virtual void	ImageGeometryOff ()

const GeometryTransformHolder *	GetGeometryTransformHolder () const
	Get the internal GeometryTransformHolder. More...

void	MapAxesToOrientations (int axes[]) const
	Map geometry axes to anatomical orientations (sagittal, coronal, axial). More...

Public Member Functions inherited from mitk::OperationActor
	itkTypeMacroNoParent (OperationActor) virtual ~OperationActor()

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
	Geometry3D ()

	Geometry3D (const Geometry3D &)

	~Geometry3D () override

	mitkCloneMacro (Self)

void	PreSetSpacing (const mitk::Vector3D &aSpacing) override
	PreSetSpacing. More...

Protected Member Functions inherited from mitk::BaseGeometry
	BaseGeometry ()

	BaseGeometry (const BaseGeometry &other)

	~BaseGeometry () override

void	PrintSelf (std::ostream &os, itk::Indent indent) const override

virtual unsigned int	GetNDimensions () const

bool	IsBoundingBoxNull () const

bool	IsIndexToWorldTransformNull () const

void	SetVtkMatrixDeepCopy (vtkTransform *vtktransform)

void	_SetSpacing (const mitk::Vector3D &aSpacing, bool enforceSetSpacing=false)

virtual void	CheckBounds (const BoundsArrayType &)
	CheckBounds. More...

virtual void	CheckIndexToWorldTransform (mitk::AffineTransform3D *)
	CheckIndexToWorldTransform. More...

Additional Inherited Members
Static Protected Member Functions inherited from mitk::BaseGeometry
static const std::string	GetTransformAsString (TransformType *transformType)

Detailed Description

Standard three-dimensional geometry.

Geometry3D is the default concrete implementation of BaseGeometry. It provides a standard 3D spatial reference (origin, spacing, and affine IndexToWorldTransform) without any additional constraints beyond those defined by BaseGeometry.

Most MITK data objects (Image, Surface, PointSet) use Geometry3D as their spatial geometry unless a more specialized geometry (PlaneGeometry, SlicedGeometry3D, etc.) is required.

See also: BaseGeometry, PlaneGeometry, SlicedGeometry3D

Definition at line 44 of file mitkGeometry3D.h.

Member Typedef Documentation

◆ QuaternionTransformType

typedef itk::QuaternionRigidTransform<ScalarType> mitk::Geometry3D::QuaternionTransformType

Quaternion rigid transform type (for rotation representations).

Definition at line 50 of file mitkGeometry3D.h.

◆ VnlQuaternionType

typedef QuaternionTransformType::VnlQuaternionType mitk::Geometry3D::VnlQuaternionType

VNL quaternion type derived from QuaternionTransformType.

Definition at line 52 of file mitkGeometry3D.h.

Constructor & Destructor Documentation

◆ Geometry3D() [1/2]

mitk::Geometry3D::Geometry3D ( )

protected

◆ Geometry3D() [2/2]

mitk::Geometry3D::Geometry3D ( const Geometry3D & )

protected

◆ ~Geometry3D()

mitk::Geometry3D::~Geometry3D ( )

overrideprotected

Member Function Documentation

◆ Clone()

Pointer mitk::Geometry3D::Clone ( ) const

◆ mitkClassMacro()

mitk::Geometry3D::mitkClassMacro	(	Geometry3D	,
		mitk::BaseGeometry
	)

◆ mitkCloneMacro()

mitk::Geometry3D::mitkCloneMacro ( Self )

protected

◆ mitkNewMacro1Param()

mitk::Geometry3D::mitkNewMacro1Param	(	Self	,
		const Self &
	)

◆ New()

static Pointer mitk::Geometry3D::New ( )

static

Method for creation through the object factory.

◆ PreSetSpacing()

void mitk::Geometry3D::PreSetSpacing ( const mitk::Vector3D & aSpacing )

inlineoverrideprotectedvirtual

PreSetSpacing.

These virtual function allows a different beahiour in subclasses. Do implement them in every subclass of BaseGeometry. If not needed, use Superclass::PreSetSpacing().

Reimplemented from mitk::BaseGeometry.

Definition at line 74 of file mitkGeometry3D.h.

The documentation for this class was generated from the following file:

mitkGeometry3D.h

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ QuaternionTransformType

◆ VnlQuaternionType

Constructor & Destructor Documentation

◆ Geometry3D() [1/2]

◆ Geometry3D() [2/2]

◆ ~Geometry3D()

Member Function Documentation

◆ Clone()

◆ mitkClassMacro()

◆ mitkCloneMacro()

◆ mitkNewMacro1Param()

◆ New()

◆ PreSetSpacing()