A filter that can extract contours out of a 2D binary image. More...

#include <mitkImageToContourFilter.h>

Inheritance diagram for mitk::ImageToContourFilter:

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Collaboration diagram for mitk::ImageToContourFilter:

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Public Types
typedef itk::PolyLineParametricPath< 2 >	PolyLineParametricPath2D

typedef PolyLineParametricPath2D::VertexListType	ContourPath

Public Types inherited from mitk::ImageToSurfaceFilter
enum	DecimationType { NoDecimation , DecimatePro , QuadricDecimation }
	Enumeration of available polygon decimation strategies. More...

Public Types inherited from mitk::SurfaceSource
typedef Surface	OutputType

Public Types inherited from mitk::BaseDataSource
typedef BaseData	OutputType
	Output data type. More...

typedef itk::DataObject::DataObjectIdentifierType	DataObjectIdentifierType
	Identifier type for named data objects. More...

Public Member Functions
	mitkClassMacro (ImageToContourFilter, ImageToSurfaceFilter)

Pointer	Clone () const

virtual void	SetSliceGeometry (BaseGeometry *_arg)
	Set macro for the geometry of the slice. If it is not set explicitly the geometry will be taken from the slice. More...

void	SetUseProgressBar (bool)
	Set whether the mitkProgressBar should be used. More...

void	SetProgressStepSize (unsigned int stepSize)
	Set the stepsize which the progress bar should proceed. More...

virtual void	SetContourValue (ScalarType _arg)
	Sets the contour value to be extracted if there are multiple contours. More...

Public Member Functions inherited from mitk::ImageToSurfaceFilter
	mitkClassMacro (ImageToSurfaceFilter, SurfaceSource)

Pointer	Clone () const

void	GenerateData () override

void	GenerateOutputInformation () override

const mitk::Image *	GetInput (void)

virtual void	SetInput (const mitk::Image *image)

void	SetSmoothIteration (int smoothIteration)
	Set the number of iterations used to smooth the surface. More...

void	SetSmoothRelaxation (float smoothRelaxation)
	Set the relaxation factor for Laplacian smoothing. More...

virtual void	SetThreshold (ScalarType _arg)
	Set the threshold used for surface extraction via vtkMarchingCubes. More...

virtual ScalarType	GetThreshold () const
	Get the threshold used for vtkMarchingCubes surface extraction. More...

virtual void	SetSmooth (bool _arg)
	Enable vtkSmoothPolyDataFilter for Laplacian smoothing. More...

virtual void	SmoothOn ()
	Toggle surface smoothing on/off. More...

virtual void	SmoothOff ()

virtual bool	GetSmooth () const
	Get whether surface smoothing is enabled. More...

virtual DecimationType	GetDecimate () const
	Get the current decimation mode. More...

virtual void	SetDecimate (DecimationType _arg)
	Set the decimation mode to reduce the number of triangles in the mesh. More...

virtual void	SetTargetReduction (float _arg)
	Set the desired target reduction of triangles in the range [0.0, 1.0]. More...

virtual float	GetTargetReduction () const
	Get the target reduction factor for the decimation filter. More...

template<class T1 , class T2 , class T3 >
void	mitkVtkLinearTransformPoint (T1 matrix[4][4], T2 in[3], T3 out[3])
	Transform a 3D point by a 4x4 matrix (affine transformation). More...

Public Member Functions inherited from mitk::SurfaceSource
	mitkClassMacro (SurfaceSource, BaseDataSource)

Pointer	Clone () const

mitkBaseDataSourceGetOutputDeclarations itk::DataObject::Pointer	MakeOutput (DataObjectPointerArraySizeType idx) override
	Allocate a new output object and return it. More...

itk::DataObject::Pointer	MakeOutput (const DataObjectIdentifierType &name) override
	Allocate a new output object by name. More...

Public Member Functions inherited from mitk::BaseDataSource
	mitkClassMacroItkParent (BaseDataSource, itk::ProcessObject)

OutputType *	GetOutput ()

const OutputType *	GetOutput () const

OutputType *	GetOutput (DataObjectPointerArraySizeType idx)

const OutputType *	GetOutput (DataObjectPointerArraySizeType idx) const

virtual void	GraftOutput (OutputType *output)
	Graft the specified BaseData onto this BaseDataSource's output. More...

virtual void	GraftOutput (const DataObjectIdentifierType &key, OutputType *output)
	Graft the specified base data object onto a named output. More...

virtual void	GraftNthOutput (unsigned int idx, OutputType *output)
	Graft the specified base data object onto this BaseDataSource's idx'th output. More...

bool	Updating () const
	Check whether the pipeline is currently executing. More...

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from mitk::ImageToSurfaceFilter
static Pointer	New ()

Static Public Member Functions inherited from mitk::SurfaceSource
static Pointer	New ()

Protected Member Functions
	ImageToContourFilter ()

	~ImageToContourFilter () override

void	GenerateData () override

void	GenerateOutputInformation () override

Protected Member Functions inherited from mitk::ImageToSurfaceFilter
	ImageToSurfaceFilter ()

	~ImageToSurfaceFilter () override
	Destructor. More...

void	CreateSurface (int time, vtkImageData vtkimage, mitk::Surface surface, const ScalarType threshold)
	Create the surface for a single time step using vtkMarchingCubes. More...

Protected Member Functions inherited from mitk::SurfaceSource
	SurfaceSource ()

	~SurfaceSource () override

Protected Member Functions inherited from mitk::BaseDataSource
	BaseDataSource ()
	Constructor. More...

	~BaseDataSource () override
	Destructor. More...

Additional Inherited Members
Static Protected Member Functions inherited from mitk::BaseDataSource
static Pointer	New ()

Protected Attributes inherited from mitk::ImageToSurfaceFilter
bool	m_Smooth
	Flag whether the created surface shall be smoothed (default is false). More...

DecimationType	m_Decimate
	Decimation mode. Default is NoDecimation. More...

ScalarType	m_Threshold
	Threshold for surface extraction. Default value is 1. More...

float	m_TargetReduction
	The reduction factor for the decimation filter. Range [0.0, 1.0]. More...

int	m_SmoothIteration
	The number of iterations for the smoothing filter. Default is 50. More...

float	m_SmoothRelaxation
	The relaxation factor for the smoothing filter. Default is 0.1. More...

Detailed Description

A filter that can extract contours out of a 2D binary image.

This class takes an 2D mitk::Image as input and extracts all contours which are drawn it. The contour extraction is done by using the itk::ContourExtractor2DImageFilter.

The output is a mitk::Surface.

Author: fetzer

Definition at line 41 of file mitkImageToContourFilter.h.

Member Typedef Documentation

◆ ContourPath

typedef PolyLineParametricPath2D::VertexListType mitk::ImageToContourFilter::ContourPath

Definition at line 58 of file mitkImageToContourFilter.h.

◆ PolyLineParametricPath2D

typedef itk::PolyLineParametricPath<2> mitk::ImageToContourFilter::PolyLineParametricPath2D

Definition at line 57 of file mitkImageToContourFilter.h.

Constructor & Destructor Documentation

◆ ImageToContourFilter()

mitk::ImageToContourFilter::ImageToContourFilter ( )

protected

◆ ~ImageToContourFilter()

mitk::ImageToContourFilter::~ImageToContourFilter ( )

overrideprotected

Member Function Documentation

◆ Clone()

Pointer mitk::ImageToContourFilter::Clone ( ) const

◆ GenerateData()

void mitk::ImageToContourFilter::GenerateData ( )

overrideprotected

◆ GenerateOutputInformation()

void mitk::ImageToContourFilter::GenerateOutputInformation ( )

overrideprotected

◆ mitkClassMacro()

mitk::ImageToContourFilter::mitkClassMacro	(	ImageToContourFilter	,
		ImageToSurfaceFilter
	)

◆ New()

static Pointer mitk::ImageToContourFilter::New ( )

static

◆ SetContourValue()

virtual void mitk::ImageToContourFilter::SetContourValue ( ScalarType _arg )

virtual

Sets the contour value to be extracted if there are multiple contours.

◆ SetProgressStepSize()

void mitk::ImageToContourFilter::SetProgressStepSize ( unsigned int stepSize )

Set the stepsize which the progress bar should proceed.

Parameter The stepsize for progressing

◆ SetSliceGeometry()

virtual void mitk::ImageToContourFilter::SetSliceGeometry ( BaseGeometry * _arg )

virtual

Set macro for the geometry of the slice. If it is not set explicitly the geometry will be taken from the slice.

Parameter The slice's geometry

◆ SetUseProgressBar()

void mitk::ImageToContourFilter::SetUseProgressBar ( bool )

Set whether the mitkProgressBar should be used.

Parameter true for using the progress bar, false otherwise

The documentation for this class was generated from the following file:

mitkImageToContourFilter.h

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ ContourPath

◆ PolyLineParametricPath2D

Constructor & Destructor Documentation

◆ ImageToContourFilter()

◆ ~ImageToContourFilter()

Member Function Documentation

◆ Clone()

◆ GenerateData()

◆ GenerateOutputInformation()

◆ mitkClassMacro()

◆ New()

◆ SetContourValue()

◆ SetProgressStepSize()

◆ SetSliceGeometry()

◆ SetUseProgressBar()