Contour-based correction algorithm for 2D binary segmentation images. More...

#include <mitkCorrectorAlgorithm.h>

Inheritance diagram for mitk::CorrectorAlgorithm:

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Collaboration diagram for mitk::CorrectorAlgorithm:

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Classes
struct	TSegData

Public Types
typedef mitk::Label::PixelType	DefaultSegmentationDataType

Public Types inherited from mitk::ImageToImageFilter
typedef Superclass::OutputImageRegionType	OutputImageRegionType
	Superclass typedefs. More...

typedef mitk::Image	InputImageType
	Some convenient typedefs. More...

typedef InputImageType::Pointer	InputImagePointer

typedef InputImageType::ConstPointer	InputImageConstPointer

typedef SlicedData::RegionType	InputImageRegionType

Public Types inherited from mitk::ImageSource
typedef mitk::Image	OutputImageType
	Some convenient typedefs. More...

typedef OutputImageType	OutputType

typedef OutputImageType::Pointer	OutputImagePointer

typedef SlicedData::RegionType	OutputImageRegionType

Public Types inherited from mitk::BaseDataSource
typedef BaseData	OutputType
	Output data type. More...

typedef itk::DataObject::DataObjectIdentifierType	DataObjectIdentifierType
	Identifier type for named data objects. More...

Public Member Functions
	mitkClassMacro (CorrectorAlgorithm, ImageToImageFilter)

Pointer	Clone () const

void	SetContour (ContourModel *contour)
	Set the user-drawn contour that defines the correction region. More...

virtual void	SetFillColor (int _arg)

virtual int	GetFillColor () const

virtual void	SetEraseColor (int _arg)

virtual int	GetEraseColor () const

Public Member Functions inherited from mitk::ImageToImageFilter
	mitkClassMacro (ImageToImageFilter, ImageSource)

Pointer	Clone () const

virtual void	SetInput (const InputImageType *image)
	Set the image input of this process object. More...

virtual void	SetInput (unsigned int idx, const InputImageType *image)
	Set the image input at the specified index. More...

InputImageType *	GetInput (void)
	Get the input image (non-const). More...

InputImageType *	GetInput (unsigned int idx)
	Get the input image at the specified index (non-const). More...

const InputImageType *	GetInput (void) const
	Get the input image (const). More...

const InputImageType *	GetInput (unsigned int idx) const
	Get the input image at the specified index (const). More...

Public Member Functions inherited from mitk::ImageSource
	mitkClassMacro (ImageSource, BaseDataSource)

Pointer	Clone () const

mitkBaseDataSourceGetOutputDeclarations itk::DataObject::Pointer	MakeOutput (DataObjectPointerArraySizeType idx) override
	Get the output data of this image source object. More...

itk::DataObject::Pointer	MakeOutput (const DataObjectIdentifierType &name) override

virtual vtkImageData *	GetVtkImageData ()
	Get the output as VTK image data (non-const version). More...

virtual const vtkImageData *	GetVtkImageData () const
	Get the output as VTK image data (const version). More...

Public Member Functions inherited from mitk::BaseDataSource
	mitkClassMacroItkParent (BaseDataSource, itk::ProcessObject)

OutputType *	GetOutput ()

const OutputType *	GetOutput () const

OutputType *	GetOutput (DataObjectPointerArraySizeType idx)

const OutputType *	GetOutput (DataObjectPointerArraySizeType idx) const

virtual void	GraftOutput (OutputType *output)
	Graft the specified BaseData onto this BaseDataSource's output. More...

virtual void	GraftOutput (const DataObjectIdentifierType &key, OutputType *output)
	Graft the specified base data object onto a named output. More...

virtual void	GraftNthOutput (unsigned int idx, OutputType *output)
	Graft the specified base data object onto this BaseDataSource's idx'th output. More...

bool	Updating () const
	Check whether the pipeline is currently executing. More...

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from mitk::ImageToImageFilter
static Pointer	New ()
	Method for creation through the object factory. More...

Static Public Member Functions inherited from mitk::ImageSource
static Pointer	New ()
	Method for creation through the object factory. More...

Protected Member Functions
	CorrectorAlgorithm ()

	~CorrectorAlgorithm () override

void	GenerateData () override
	Perform the actual contour correction processing. More...

bool	ImprovedHeimannCorrectionAlgorithm (itk::Image< DefaultSegmentationDataType, 2 >::Pointer pic)
	Apply the improved Heilmann correction algorithm on the given 2D image. More...

bool	ModifySegment (const TSegData &segment, itk::Image< DefaultSegmentationDataType, 2 >::Pointer pic)
	Modify a single segment in the image according to the correction contour. More...

Protected Member Functions inherited from mitk::ImageToImageFilter
	ImageToImageFilter ()

	~ImageToImageFilter () override

void	PrintSelf (std::ostream &os, itk::Indent indent) const override
	Print self information to the given stream. More...

void	GenerateInputRequestedRegion () override
	Determine the input requested region to produce the output requested region. More...

Protected Member Functions inherited from mitk::ImageSource
	ImageSource ()

	~ImageSource () override

void	GenerateData () override
	A version of GenerateData() specific for image processing filters. More...

virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, itk::ThreadIdType threadId)
	If an imaging filter can be implemented as a multithreaded algorithm, the filter will provide an implementation of ThreadedGenerateData(). More...

void	PrepareOutputs () override
	This method is intentionally left blank. More...

virtual void	AllocateOutputs ()
	The GenerateData method normally allocates the buffers for all of the outputs of a filter. More...

virtual void	BeforeThreadedGenerateData ()
	If an imaging filter needs to perform processing after the buffer has been allocated but before threads are spawned, the filter can provide an implementation for BeforeThreadedGenerateData(). More...

virtual void	AfterThreadedGenerateData ()
	If an imaging filter needs to perform processing after all processing threads have completed, the filter can provide an implementation for AfterThreadedGenerateData(). More...

virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int num, OutputImageRegionType &splitRegion)
	Split the output's RequestedRegion into "num" pieces, returning region "i" as "splitRegion". More...

Protected Member Functions inherited from mitk::BaseDataSource
	BaseDataSource ()
	Constructor. More...

	~BaseDataSource () override
	Destructor. More...

Protected Attributes
Image::Pointer	m_WorkingImage

ContourModel::Pointer	m_Contour

Image::Pointer	m_DifferenceImage

int	m_FillColor

int	m_EraseColor

Additional Inherited Members
Static Protected Member Functions inherited from mitk::ImageSource
static itk::ITK_THREAD_RETURN_TYPE	ThreaderCallback (void *arg)
	Static function used as a "callback" by the MultiThreader. More...

Static Protected Member Functions inherited from mitk::BaseDataSource
static Pointer	New ()

Detailed Description

Contour-based correction algorithm for 2D binary segmentation images.

This class takes a 2D binary image and a user-drawn contour. The algorithm tests whether the line begins and ends inside or outside the segmentation and determines whether areas should be added to or subtracted from the segmentation shape.

The output is the modified input image, combining the original input with the generated difference.

See also: CorrectorTool2D

Definition at line 38 of file mitkCorrectorAlgorithm.h.

Member Typedef Documentation

◆ DefaultSegmentationDataType

typedef mitk::Label::PixelType mitk::CorrectorAlgorithm::DefaultSegmentationDataType

Definition at line 45 of file mitkCorrectorAlgorithm.h.

Constructor & Destructor Documentation

◆ CorrectorAlgorithm()

mitk::CorrectorAlgorithm::CorrectorAlgorithm ( )

protected

◆ ~CorrectorAlgorithm()

mitk::CorrectorAlgorithm::~CorrectorAlgorithm ( )

overrideprotected

Member Function Documentation

◆ Clone()

Pointer mitk::CorrectorAlgorithm::Clone ( ) const

◆ GenerateData()

void mitk::CorrectorAlgorithm::GenerateData ( )

overrideprotected

Perform the actual contour correction processing.

◆ GetEraseColor()

virtual int mitk::CorrectorAlgorithm::GetEraseColor ( ) const

virtual

◆ GetFillColor()

virtual int mitk::CorrectorAlgorithm::GetFillColor ( ) const

virtual

◆ ImprovedHeimannCorrectionAlgorithm()

bool mitk::CorrectorAlgorithm::ImprovedHeimannCorrectionAlgorithm ( itk::Image< DefaultSegmentationDataType, 2 >::Pointer pic )

protected

Apply the improved Heilmann correction algorithm on the given 2D image.

Returns: True if the correction was applied successfully.

◆ mitkClassMacro()

mitk::CorrectorAlgorithm::mitkClassMacro	(	CorrectorAlgorithm	,
		ImageToImageFilter
	)

◆ ModifySegment()

bool mitk::CorrectorAlgorithm::ModifySegment	(	const TSegData &	segment,
		itk::Image< DefaultSegmentationDataType, 2 >::Pointer	pic
	)

protected

Modify a single segment in the image according to the correction contour.

Returns: True if the segment was modified successfully.

◆ New()

static Pointer mitk::CorrectorAlgorithm::New ( )

static

◆ SetContour()

void mitk::CorrectorAlgorithm::SetContour ( ContourModel * contour )

inline

Set the user-drawn contour that defines the correction region.

Definition at line 50 of file mitkCorrectorAlgorithm.h.

◆ SetEraseColor()

virtual void mitk::CorrectorAlgorithm::SetEraseColor ( int _arg )

virtual

◆ SetFillColor()

virtual void mitk::CorrectorAlgorithm::SetFillColor ( int _arg )

virtual

Member Data Documentation

◆ m_Contour

ContourModel::Pointer mitk::CorrectorAlgorithm::m_Contour

protected

Definition at line 85 of file mitkCorrectorAlgorithm.h.

◆ m_DifferenceImage

Image::Pointer mitk::CorrectorAlgorithm::m_DifferenceImage

protected

Definition at line 86 of file mitkCorrectorAlgorithm.h.

◆ m_EraseColor

int mitk::CorrectorAlgorithm::m_EraseColor

protected

Definition at line 89 of file mitkCorrectorAlgorithm.h.

◆ m_FillColor

int mitk::CorrectorAlgorithm::m_FillColor

protected

Definition at line 88 of file mitkCorrectorAlgorithm.h.

◆ m_WorkingImage

Image::Pointer mitk::CorrectorAlgorithm::m_WorkingImage

protected

Definition at line 84 of file mitkCorrectorAlgorithm.h.

The documentation for this class was generated from the following file:

mitkCorrectorAlgorithm.h

Classes

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ DefaultSegmentationDataType

Constructor & Destructor Documentation

◆ CorrectorAlgorithm()

◆ ~CorrectorAlgorithm()

Member Function Documentation

◆ Clone()

◆ GenerateData()

◆ GetEraseColor()

◆ GetFillColor()

◆ ImprovedHeimannCorrectionAlgorithm()

◆ mitkClassMacro()

◆ ModifySegment()

◆ New()

◆ SetContour()

◆ SetEraseColor()

◆ SetFillColor()

Member Data Documentation

◆ m_Contour

◆ m_DifferenceImage

◆ m_EraseColor

◆ m_FillColor

◆ m_WorkingImage