mitkAIFBasedModelParameterizerBase.h

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/*============================================================================
 
The Medical Imaging Interaction Toolkit (MITK)
 
Copyright (c) German Cancer Research Center (DKFZ)
All rights reserved.
 
Use of this source code is governed by a 3-clause BSD license that can be
found in the LICENSE file.
 
============================================================================*/
#ifndef mitkAIFBasedModelParameterizerBase_h
#define mitkAIFBasedModelParameterizerBase_h
 
#include <mitkConcreteModelParameterizerBase.h>
#include <mitkAIFParametrizerHelper.h>
#include <mitkAIFBasedModelBase.h>
 
namespace mitk
{
  template <class TAIFBasedModel>
  class MITKPHARMACOKINETICS_EXPORT AIFBasedModelParameterizerBase : public ConcreteModelParameterizerBase
    <TAIFBasedModel>
  {
  public:
    typedef AIFBasedModelParameterizerBase<TAIFBasedModel> Self;
    typedef ConcreteModelParameterizerBase<TAIFBasedModel> Superclass;
    typedef itk::SmartPointer< Self >                            Pointer;
    typedef itk::SmartPointer< const Self >                      ConstPointer;
 
    itkTypeMacro(AIFBasedModelParameterizerBase, ConcreteModelParameterizerBase);
 
    typedef typename Superclass::ModelBaseType ModelBaseType;
    typedef typename Superclass::ModelBasePointer ModelBasePointer;
 
    typedef typename Superclass::ModelType ModelType;
    typedef typename Superclass::ModelPointer ModelPointer;
 
    typedef typename Superclass::StaticParameterValueType StaticParameterValueType;
    typedef typename Superclass::StaticParameterValuesType StaticParameterValuesType;
    typedef typename Superclass::StaticParameterMapType StaticParameterMapType;
 
 
    typedef typename Superclass::IndexType IndexType;
 
    itkSetMacro(AIF, mitk::AIFBasedModelBase::AterialInputFunctionType);
    itkGetConstReferenceMacro(AIF, mitk::AIFBasedModelBase::AterialInputFunctionType);
 
    itkSetMacro(AIFTimeGrid, mitk::ModelBase::TimeGridType);
    itkGetConstReferenceMacro(AIFTimeGrid, mitk::ModelBase::TimeGridType);
 
 
    StaticParameterMapType GetGlobalStaticParameters() const override
    {
      StaticParameterMapType result;
      StaticParameterValuesType valuesAIF = mitk::convertArrayToParameter(this->m_AIF);
      StaticParameterValuesType valuesAIFGrid = mitk::convertArrayToParameter(this->m_AIFTimeGrid);
 
      result.insert(std::make_pair(ModelType::NAME_STATIC_PARAMETER_AIF, valuesAIF));
      result.insert(std::make_pair(ModelType::NAME_STATIC_PARAMETER_AIFTimeGrid, valuesAIFGrid));
 
      return result;
    };
 
 
  protected:
 
    AIFBasedModelParameterizerBase()
    {};
 
    ~AIFBasedModelParameterizerBase() override
    {};
 
 
    mitk::AIFBasedModelBase::AterialInputFunctionType m_AIF;
    mitk::ModelBase::TimeGridType m_AIFTimeGrid;
 
 
  private:
 
    //No copy constructor allowed
    AIFBasedModelParameterizerBase(const Self& source);
    void operator=(const Self&);  //purposely not implemented
  };
 
}
#endif