#include <mitkOtsuTool3D.h>

Inheritance diagram for mitk::OtsuTool3D:

[legend]

Collaboration diagram for mitk::OtsuTool3D:

[legend]

Public Member Functions
	mitkClassMacro (OtsuTool3D, AutoSegmentationTool)

Pointer	Clone () const

const char *	GetName () const override
	Returns the name of this tool. Make it short! More...

const char **	GetXPM () const override
	Returns an icon in the XPM format. More...

us::ModuleResource	GetIconResource () const override
	Returns the tool button icon of the tool wrapped by a usModuleResource. More...

void	Activated () override
	Called when the tool gets activated. More...

void	Deactivated () override
	Called when the tool gets deactivated. More...

void	RunSegmentation (int regions, bool useValley, int numberOfBins)

void	ConfirmSegmentation ()

void	UpdateBinaryPreview (std::vector< int > regionIDs)

void	UpdateVolumePreview (bool volumeRendering)

void	ShowMultiLabelResultNode (bool)

int	GetNumberOfBins ()

Public Member Functions inherited from mitk::AutoSegmentationTool
	mitkClassMacro (AutoSegmentationTool, Tool)

void	SetOverwriteExistingSegmentation (bool overwrite)

std::string	GetCurrentSegmentationName ()
	Gets the name of the currently selected segmentation node. More...

virtual mitk::DataNode *	GetTargetSegmentationNode ()
	Depending on the selected mode either returns the currently selected segmentation or creates a new one from the selected reference data and adds the new segmentation to the datastorage. More...

Public Member Functions inherited from mitk::Tool
	mitkClassMacro (Tool, EventStateMachine)

virtual std::string	GetIconPath () const
	Returns the path of an icon. More...

virtual us::ModuleResource	GetCursorIconResource () const
	Returns the path of a cursor icon. More...

virtual void	InitializeStateMachine ()

virtual itk::Object::Pointer	GetGUI (const std::string &toolkitPrefix, const std::string &toolkitPostfix)
	Interface for GUI creation. More...

virtual NodePredicateBase::ConstPointer	GetReferenceDataPreference () const

virtual NodePredicateBase::ConstPointer	GetWorkingDataPreference () const

DataNode::Pointer	CreateEmptySegmentationNode (const Image *original, const std::string &organName, const mitk::Color &color)

DataNode::Pointer	CreateSegmentationNode (Image *image, const std::string &organName, const mitk::Color &color)

virtual bool	CanHandle (BaseData *referenceData) const

Public Member Functions inherited from mitk::EventStateMachine
virtual std::vector< std::string >	GetClassHierarchy () const override

virtual const char *	GetClassName () const

bool	LoadStateMachine (const std::string &filename, const us::Module *module=nullptr)
	Loads XML resource. More...

bool	HandleEvent (InteractionEvent event, DataNode dataNode)

void	EnableUndo (bool enable)
	Enables or disabled Undo. More...

void	EnableInteraction (bool enable)
	Enables/disables the state machine. In un-enabled state it won't react to any events. More...

Public Member Functions inherited from mitk::InteractionEventHandler
bool	SetEventConfig (const std::string &filename, const us::Module *module=nullptr)
	Loads a configuration from an XML resource. More...

bool	SetEventConfig (const EventConfig &config)
	Loads a configuration from an EventConfig object. More...

EventConfig	GetEventConfig () const
	Returns the current configuration. More...

bool	AddEventConfig (const std::string &filename, const us::Module *module=nullptr)
	This method extends the configuration. More...

bool	AddEventConfig (const EventConfig &config)
	This method extends the configuration. The configuration from the EventConfig object is loaded and only the ones conflicting are replaced by the new one. This way several configurations can be combined. More...

Public Member Functions inherited from mitk::InteractionEventObserver
	InteractionEventObserver ()

virtual	~InteractionEventObserver ()

void	Disable ()

void	Enable ()

bool	IsEnabled () const

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from mitk::EventStateMachine
static const char *	GetStaticNameOfClass ()

Static Public Member Functions inherited from mitk::InteractionEventHandler
static const char *	GetStaticNameOfClass ()

Protected Member Functions
	OtsuTool3D ()

	~OtsuTool3D () override

template<typename TPixel , unsigned int VImageDimension>
void	CalculatePreview (itk::Image< TPixel, VImageDimension > *itkImage, std::vector< int > regionIDs)

Protected Member Functions inherited from mitk::AutoSegmentationTool
	AutoSegmentationTool ()

	~AutoSegmentationTool () override

const char *	GetGroup () const override
	Name of a group. More...

virtual itk::SmartPointer< Image >	Get3DImage (itk::SmartPointer< Image > image, unsigned int timestep)

Protected Member Functions inherited from mitk::Tool
virtual void	SetToolManager (ToolManager *)

void	ConnectActionsAndFunctions () override

	Tool ()

	Tool (const char , const us::Module interactorModule=nullptr)

	~Tool () override

void	Notify (InteractionEvent *interactionEvent, bool isHandled) override

bool	FilterEvents (InteractionEvent , DataNode ) override

Protected Member Functions inherited from mitk::EventStateMachine
	EventStateMachine ()

	~EventStateMachine () override

void	AddActionFunction (const std::string &action, TActionFunctor *functor)

void	AddActionFunction (const std::string &action, const ActionFunctionDelegate &delegate)

void	AddConditionFunction (const std::string &condition, const ConditionFunctionDelegate &delegate)

StateMachineState *	GetCurrentState () const

void	ResetToStartState ()
	ResetToStartState Reset state machine to it initial starting state. More...

virtual bool	CheckCondition (const StateMachineCondition &condition, const InteractionEvent *interactionEvent)

virtual void	ExecuteAction (StateMachineAction action, InteractionEvent interactionEvent)

void	SetMouseCursor (const char *xpm[], int hotspotX, int hotspotY)
	Sets the specified mouse cursor. More...

void	ResetMouseCursor ()
	Resets the mouse cursor (if modified by the SlicesCoordinator) to its original state. More...

StateMachineTransition *	GetExecutableTransition (InteractionEvent *event)
	Returns the executable transition for the given event. More...

Protected Member Functions inherited from mitk::InteractionEventHandler
	InteractionEventHandler ()

	~InteractionEventHandler () override

PropertyList::Pointer	GetAttributes () const

std::string	MapToEventVariant (InteractionEvent *interactionEvent)

virtual void	ConfigurationChanged ()

Protected Attributes
itk::SmartPointer< Image >	m_OriginalImage

mitk::DataNode::Pointer	m_BinaryPreviewNode

mitk::DataNode::Pointer	m_MultiLabelResultNode

mitk::DataNode::Pointer	m_MaskedImagePreviewNode

Protected Attributes inherited from mitk::AutoSegmentationTool
bool	m_OverwriteExistingSegmentation

Protected Attributes inherited from mitk::Tool
std::string	m_EventConfig
	Let subclasses change their event configuration. More...

ToolManager *	m_ToolManager

Protected Attributes inherited from mitk::EventStateMachine
bool	m_IsActive

UndoController *	m_UndoController

bool	m_UndoEnabled

Additional Inherited Members
Public Types inherited from mitk::Tool
typedef mitk::Label::PixelType	DefaultSegmentationDataType

Public Types inherited from mitk::EventStateMachine
typedef EventStateMachine	Self

typedef InteractionEventHandler	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef std::map< std::string, TActionFunctor * >	ActionFunctionsMapType

typedef itk::SmartPointer< StateMachineState >	StateMachineStateType

Public Types inherited from mitk::InteractionEventHandler
typedef InteractionEventHandler	Self

typedef itk::Object	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

Public Attributes inherited from mitk::Tool
Message	GUIProcessEventsMessage
	To let GUI process new events (e.g. qApp->processEvents() ) More...

Message1< std::string >	ErrorMessage
	To send error messages (to be shown by some GUI) More...

Message1< bool >	CurrentlyBusy
	To send whether the tool is busy (to be shown by some GUI) More...

Message1< std::string >	GeneralMessage
	To send general messages (to be shown by some GUI) More...

Protected Types inherited from mitk::EventStateMachine
typedef MessageAbstractDelegate2< StateMachineAction , InteractionEvent , void >	ActionFunctionDelegate

typedef MessageAbstractDelegate1< const InteractionEvent *, bool >	ConditionFunctionDelegate

Detailed Description

Definition at line 28 of file mitkOtsuTool3D.h.

Constructor & Destructor Documentation

◆ OtsuTool3D()

mitk::OtsuTool3D::OtsuTool3D ( )

protected

Definition at line 45 of file mitkOtsuTool3D.cpp.

◆ ~OtsuTool3D()

mitk::OtsuTool3D::~OtsuTool3D ( )

overrideprotected

Definition at line 49 of file mitkOtsuTool3D.cpp.

Member Function Documentation

◆ Activated()

void mitk::OtsuTool3D::Activated ( )

overridevirtual

Called when the tool gets activated.

Derived tools should call their parents implementation at the beginning of the overriding function.

Reimplemented from mitk::Tool.

Definition at line 53 of file mitkOtsuTool3D.cpp.

References mitk::FloatProperty::New(), mitk::ColorProperty::New(), and mitk::DataNode::New().

◆ CalculatePreview()

template<typename TPixel , unsigned int VImageDimension>

void mitk::OtsuTool3D::CalculatePreview	(	itk::Image< TPixel, VImageDimension > *	itkImage,
		std::vector< int >	regionIDs
	)

protected

Definition at line 187 of file mitkOtsuTool3D.cpp.

References mitk::CastToMitkImage(), mitk::RenderingManager::GetInstance(), mitk::BoolProperty::New(), and mitk::RenderingManager::RequestUpdateAll().

◆ Clone()

Pointer mitk::OtsuTool3D::Clone ( ) const

◆ ConfirmSegmentation()

void mitk::OtsuTool3D::ConfirmSegmentation ( )

Definition at line 170 of file mitkOtsuTool3D.cpp.

References mitk::LabelSetImage::New().

◆ Deactivated()

void mitk::OtsuTool3D::Deactivated ( )

overridevirtual

Called when the tool gets deactivated.

Derived tools should call their parents implementation at the end of the overriding function.

Reimplemented from mitk::Tool.

Definition at line 83 of file mitkOtsuTool3D.cpp.

◆ GetIconResource()

us::ModuleResource mitk::OtsuTool3D::GetIconResource ( ) const

overridevirtual

Returns the tool button icon of the tool wrapped by a usModuleResource.

Returns: a valid ModuleResource or an invalid if this function is not reimplemented

Reimplemented from mitk::Tool.

Definition at line 100 of file mitkOtsuTool3D.cpp.

References ModuleContext::GetModule(), us::GetModuleContext(), and us::Module::GetResource().

◆ GetName()

const char * mitk::OtsuTool3D::GetName ( ) const

overridevirtual

Returns the name of this tool. Make it short!

This name has to fit into some kind of button in most applications, so take some time to think of a good name!

Implements mitk::Tool.

Definition at line 276 of file mitkOtsuTool3D.cpp.

◆ GetNumberOfBins()

int mitk::OtsuTool3D::GetNumberOfBins ( )

Definition at line 302 of file mitkOtsuTool3D.cpp.

References max(), and min().

◆ GetXPM()

const char ** mitk::OtsuTool3D::GetXPM ( ) const

overridevirtual

Returns an icon in the XPM format.

This icon has to fit into some kind of button in most applications, so make it smaller than 25x25 pixels.

XPM is e.g. supported by The Gimp. But if you open any XPM file in your text editor, you will see that you could also "draw" it with an editor.

Implements mitk::Tool.

Definition at line 95 of file mitkOtsuTool3D.cpp.

◆ mitkClassMacro()

mitk::OtsuTool3D::mitkClassMacro	(	OtsuTool3D	,
		AutoSegmentationTool
	)

◆ New()

static Pointer mitk::OtsuTool3D::New ( )

static

◆ RunSegmentation()

void mitk::OtsuTool3D::RunSegmentation	(	int	regions,
		bool	useValley,
		int	numberOfBins
	)

Definition at line 107 of file mitkOtsuTool3D.cpp.

References mitk::RenderingManager::GetInstance(), mitk::Stepper::GetPos(), mitk::BaseController::GetTime(), mitk::RenderingManager::GetTimeNavigationController(), mitk::RenderingModeProperty::LOOKUPTABLE_LEVELWINDOW_COLOR, mitkThrow, mitk::BoolProperty::New(), mitk::LabelSetImage::New(), mitk::OtsuSegmentationFilter::New(), mitk::LevelWindowProperty::New(), mitk::LookupTable::New(), mitk::LookupTableProperty::New(), mitk::DataNode::New(), mitk::RenderingModeProperty::New(), mitk::RenderingManager::RequestUpdateAll(), and mitk::LevelWindow::SetRangeMinMax().

◆ ShowMultiLabelResultNode()

void mitk::OtsuTool3D::ShowMultiLabelResultNode ( bool show )

Definition at line 295 of file mitkOtsuTool3D.cpp.

References mitk::RenderingManager::GetInstance(), and mitk::RenderingManager::RequestUpdateAll().

◆ UpdateBinaryPreview()

void mitk::OtsuTool3D::UpdateBinaryPreview ( std::vector< int > regionIDs )

Definition at line 179 of file mitkOtsuTool3D.cpp.

References AccessByItk_1.

◆ UpdateVolumePreview()

void mitk::OtsuTool3D::UpdateVolumePreview ( bool volumeRendering )

Definition at line 281 of file mitkOtsuTool3D.cpp.

References mitk::RenderingManager::GetInstance(), and mitk::RenderingManager::RequestUpdateAll().

Member Data Documentation

◆ m_BinaryPreviewNode

mitk::DataNode::Pointer mitk::OtsuTool3D::m_BinaryPreviewNode

protected

Definition at line 60 of file mitkOtsuTool3D.h.

◆ m_MaskedImagePreviewNode

mitk::DataNode::Pointer mitk::OtsuTool3D::m_MaskedImagePreviewNode

protected

Definition at line 64 of file mitkOtsuTool3D.h.

◆ m_MultiLabelResultNode

mitk::DataNode::Pointer mitk::OtsuTool3D::m_MultiLabelResultNode

protected

Definition at line 62 of file mitkOtsuTool3D.h.

◆ m_OriginalImage

itk::SmartPointer<Image> mitk::OtsuTool3D::m_OriginalImage

protected

Definition at line 58 of file mitkOtsuTool3D.h.

The documentation for this class was generated from the following files:

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ OtsuTool3D()

◆ ~OtsuTool3D()

Member Function Documentation

◆ Activated()

◆ CalculatePreview()

◆ Clone()

◆ ConfirmSegmentation()

◆ Deactivated()

◆ GetIconResource()

◆ GetName()

◆ GetNumberOfBins()

◆ GetXPM()

◆ mitkClassMacro()

◆ New()

◆ RunSegmentation()

◆ ShowMultiLabelResultNode()

◆ UpdateBinaryPreview()

◆ UpdateVolumePreview()

Member Data Documentation

◆ m_BinaryPreviewNode

◆ m_MaskedImagePreviewNode

◆ m_MultiLabelResultNode

◆ m_OriginalImage