MRSignal2ConcentrationMiniApp.cpp File Reference

#include <string>
#include "itksys/SystemTools.hxx"
#include "mitkCommandLineParser.h"
#include <mitkIOUtil.h>
#include <mitkImageTimeSelector.h>
#include <mitkImageCast.h>
#include <mitkPreferenceListReaderOptionsFunctor.h>
#include <mitkModelFitUIDHelper.h>
#include <mitkConcentrationCurveGenerator.h>

Go to the source code of this file.

Functions
bool	verbose (false)
bool	t1_absolute (false)
bool	t1_relative (false)
bool	t1_flash (false)
bool	t2 (false)
float	k (1.0)
float	te (0)
float	rec_time (0)
float	relaxivity (0)
float	rel_time (0)
void	setupParser (mitkCommandLineParser &parser)
bool	configureApplicationSettings (std::map< std::string, us::Any > parsedArgs)
void	doConversion ()
int	main (int argc, char *argv[])

Variables
std::string	inFilename
std::string	outFileName
mitk::Image::Pointer	image

Function Documentation

configureApplicationSettings()

bool configureApplicationSettings

(

std::map< std::string, us::Any >

parsedArgs

)

Definition at line 104 of file MRSignal2ConcentrationMiniApp.cpp.

References us::any_cast(), inFilename, k(), mitkThrow, outFileName, rec_time(), rel_time(), relaxivity(), t1_absolute(), t1_flash(), t1_relative(), t2(), te(), and verbose().

Referenced by main().

doConversion()

void doConversion

(

)

Definition at line 207 of file MRSignal2ConcentrationMiniApp.cpp.

References mitk::EnsureModelFitUID(), k(), mitk::ConcentrationCurveGenerator::New(), outFileName, rec_time(), rel_time(), relaxivity(), mitk::IOUtil::Save(), t1_absolute(), t1_flash(), t1_relative(), t2(), and te().

Referenced by main().

k()

float k

(

1.

0

)

Referenced by mitk::SliceNavigationController::AdjustSliceStepperRange(), mitk::OpenIGTLinkTrackingDevice::AutoDetectTools(), mitk::Line< double, 2 >::BoxLineIntersection(), CalculateFeatures(), CalculateLargestDiameter(), mitk::CovarianceMatrixCalculator::ComputeOrthonormalCoordinateSystem(), configureApplicationSettings(), mitk::NDIAuroraTypeInformation::CreateTrackingDeviceSource(), doConversion(), mitk::ThresholdSplit< TColumnDecisionFunctor, TFeatureCalculator, TTag >::findBestSplit(), mitk::CollectionReader::FolderToCollection(), mitk::CollectionWriter::FolderToXml(), mitk::ExtrudePlanarFigureFilter::GenerateData(), mitk::ComputeContourSetNormalsFilter::GenerateData(), mitk::ReduceContourSetFilter::GenerateData(), mitk::RegionGrowingTool::GetNeighborhoodAverage(), GetNeighboursOfPoint(), mitk::VigraRandomForestClassifier::GetTreeWeights(), info(), mitk::Image::IsRotated(), LocalCalculateFeatures(), main(), multiclass_probability(), QmitkAdaptiveRegionGrowingToolGUI::OnPointAdded(), mitk::VectorImageMapper2D::Paint(), QmitkSliderLevelWindowWidget::paintEvent(), mitk::LegacyFileReaderService::Read(), QmitkFiducialRegistrationWidget::Register(), mitk::SurfaceInterpolationController::ReinitializeInterpolation(), mitk::ThresholdSplit< TColumnDecisionFunctor, TFeatureCalculator, TTag >::set_external_parameters(), mitk::LevelWindow::SetAuto(), QmitkToolDistanceWidget::ShowDistanceValues(), mitk::CollectionWriter::SingleFolderToXml(), mitk::pa::SpectralUnmixingFilterVigra::SpectralUnmixingAlgorithm(), mitk::SurfaceStampImageFilter::SurfaceStamp(), svm_binary_svc_probability(), svm_cross_validation(), svm_load_model(), svm_predict_probability(), svm_predict_values(), svm_train(), mitk::Transform::ToCSVString(), mitk::Transform::ToMatlabString(), mitk::AnisotropicIterativeClosestPointRegistration::Update(), mitk::ToFCameraPMDRawDataDevice::XYAxisFlipImage(), and mitk::pa::SpectralUnmixingFilterSimplex::~SpectralUnmixingFilterSimplex().

main()

int main	(	int	argc,
		char *	argv[]
	)

[do processing]

Definition at line 243 of file MRSignal2ConcentrationMiniApp.cpp.

References configureApplicationSettings(), doConversion(), mitkCommandLineParser::helpText(), inFilename, MITK_ERROR, mitkCommandLineParser::parseArguments(), and setupParser().

rec_time()

float rec_time

(

0

)

Referenced by configureApplicationSettings(), and doConversion().

rel_time()

float rel_time

(

0

)

Referenced by configureApplicationSettings(), and doConversion().

relaxivity()

float relaxivity

(

0

)

Referenced by configureApplicationSettings(), doConversion(), mitk::ConvertToConcentrationTurboFlashFunctor< TInputPixel1, TInputPixel2, TOutputpixel >::initialize(), and mitk::ConvertToConcentrationViaT1CalcFunctor< TInputPixel1, TInputPixel2, TInputPixel3, TOutputpixel >::initialize().

setupParser()

void setupParser

(

mitkCommandLineParser &

parser

)

[create parser]

[add arguments]

[add arguments]

Definition at line 49 of file MRSignal2ConcentrationMiniApp.cpp.

References mitkCommandLineParser::addArgument(), mitkCommandLineParser::beginGroup(), mitkCommandLineParser::Bool, mitkCommandLineParser::endGroup(), mitkCommandLineParser::File, mitkCommandLineParser::Float, mitkCommandLineParser::Input, mitkCommandLineParser::Output, mitkCommandLineParser::setArgumentPrefix(), mitkCommandLineParser::setCategory(), mitkCommandLineParser::setContributor(), mitkCommandLineParser::setDescription(), and mitkCommandLineParser::setTitle().

Referenced by main().

t1_absolute()

bool t1_absolute

(

false

)

Referenced by configureApplicationSettings(), and doConversion().

t1_flash()

bool t1_flash

(

false

)

Referenced by configureApplicationSettings(), and doConversion().

t1_relative()

bool t1_relative

(

false

)

Referenced by configureApplicationSettings(), and doConversion().

t2()

bool t2

(

false

)

Referenced by mitk::ToFCameraMITKPlayerDevice::Acquire(), mitk::ToFCameraMESADevice::Acquire(), mitk::ToFCameraPMDDevice::Acquire(), mitk::KinectDevice::Acquire(), mitk::KinectV2Device::Acquire(), mitk::ToFCameraPMDRawDataDevice::Acquire(), mitk::ThreeStepLinearModel::ComputeModelfunction(), configureApplicationSettings(), doConversion(), mitk::PlaneGeometryDataMapper2D::DrawOrientationArrow(), fresnel_cos_0_8(), fresnel_cos_8_inf(), fresnel_sin_0_8(), fresnel_sin_8_inf(), mitk::AccessItkImageFunctor< X, VDimension, T1, T2, T3 >::operator()(), mitk::NDIProtocol::POS3D(), and mitk::ToFImageRecorder::RecordData().

te()

float te

(

0

)

Referenced by configureApplicationSettings(), and doConversion().

verbose()

bool verbose

(

false

)

Referenced by configureApplicationSettings().

Variable Documentation

image

mitk::Image::Pointer image

Definition at line 34 of file MRSignal2ConcentrationMiniApp.cpp.

inFilename

std::string inFilename

Definition at line 31 of file MRSignal2ConcentrationMiniApp.cpp.

Referenced by configureApplicationSettings(), and main().

outFileName

std::string outFileName

Definition at line 32 of file MRSignal2ConcentrationMiniApp.cpp.

Referenced by configureApplicationSettings(), and doConversion().