FastMarching semgentation tool. More...

#include <mitkFastMarchingTool.h>

Inheritance diagram for mitk::FastMarchingTool:

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Collaboration diagram for mitk::FastMarchingTool:

[legend]

Public Types
typedef float	InternalPixelType

typedef itk::Image< InternalPixelType, 2 >	InternalImageType

typedef mitk::Tool::DefaultSegmentationDataType	OutputPixelType

typedef itk::Image< OutputPixelType, 2 >	OutputImageType

typedef itk::BinaryThresholdImageFilter< InternalImageType, OutputImageType >	ThresholdingFilterType

typedef itk::CurvatureAnisotropicDiffusionImageFilter< InternalImageType, InternalImageType >	SmoothingFilterType

typedef itk::GradientMagnitudeRecursiveGaussianImageFilter< InternalImageType, InternalImageType >	GradientFilterType

typedef itk::SigmoidImageFilter< InternalImageType, InternalImageType >	SigmoidFilterType

typedef itk::FastMarchingImageFilter< InternalImageType, InternalImageType >	FastMarchingFilterType

typedef FastMarchingFilterType::NodeContainer	NodeContainer

typedef FastMarchingFilterType::NodeType	NodeType

Public Types inherited from mitk::Tool
typedef mitk::Label::PixelType	DefaultSegmentationDataType

Public Types inherited from mitk::EventStateMachine
typedef EventStateMachine	Self

typedef InteractionEventHandler	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef std::map< std::string, TActionFunctor * >	ActionFunctionsMapType

typedef itk::SmartPointer< StateMachineState >	StateMachineStateType

Public Types inherited from mitk::InteractionEventHandler
typedef InteractionEventHandler	Self

typedef itk::Object	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

Public Member Functions
	mitkClassMacro (FastMarchingTool, FeedbackContourTool)

Pointer	Clone () const

const char **	GetXPM () const override
	Returns an icon in the XPM format. More...

const char *	GetName () const override
	Returns the name of this tool. Make it short! More...

us::ModuleResource	GetCursorIconResource () const override
	Returns the path of a cursor icon. More...

us::ModuleResource	GetIconResource () const override
	Returns the tool button icon of the tool wrapped by a usModuleResource. More...

void	SetUpperThreshold (double)
	Set parameter used in Threshold filter. More...

void	SetLowerThreshold (double)
	Set parameter used in Threshold filter. More...

void	SetStoppingValue (double)
	Set parameter used in Fast Marching filter. More...

void	SetSigma (double)
	Set parameter used in Gradient Magnitude filter. More...

void	SetAlpha (double)
	Set parameter used in Fast Marching filter. More...

void	SetBeta (double)
	Set parameter used in Fast Marching filter. More...

virtual void	ConfirmSegmentation ()
	Adds the feedback image to the current working image. More...

virtual void	SetCurrentTimeStep (int t)
	Set the working time step. More...

void	ClearSeeds ()
	Clear all seed points. More...

void	Update ()
	Updates the itk pipeline and shows the result of FastMarching. More...

Public Member Functions inherited from mitk::FeedbackContourTool
	mitkClassMacro (FeedbackContourTool, SegTool2D)

Public Member Functions inherited from mitk::SegTool2D
	mitkClassMacro (SegTool2D, Tool)

void	SetShowMarkerNodes (bool)

void	SetEnable3DInterpolation (bool)
	Enables or disables the 3D interpolation after writing back the 2D segmentation result, and defaults to true. More...

Public Member Functions inherited from mitk::Tool
	mitkClassMacro (Tool, EventStateMachine)

virtual std::string	GetIconPath () const
	Returns the path of an icon. More...

virtual const char *	GetGroup () const
	Name of a group. More...

virtual void	InitializeStateMachine ()

virtual itk::Object::Pointer	GetGUI (const std::string &toolkitPrefix, const std::string &toolkitPostfix)
	Interface for GUI creation. More...

virtual NodePredicateBase::ConstPointer	GetReferenceDataPreference () const

virtual NodePredicateBase::ConstPointer	GetWorkingDataPreference () const

DataNode::Pointer	CreateEmptySegmentationNode (const Image *original, const std::string &organName, const mitk::Color &color)

DataNode::Pointer	CreateSegmentationNode (Image *image, const std::string &organName, const mitk::Color &color)

virtual bool	CanHandle (BaseData *referenceData) const

Public Member Functions inherited from mitk::EventStateMachine
virtual std::vector< std::string >	GetClassHierarchy () const override

virtual const char *	GetClassName () const

bool	LoadStateMachine (const std::string &filename, const us::Module *module=nullptr)
	Loads XML resource. More...

bool	HandleEvent (InteractionEvent event, DataNode dataNode)

void	EnableUndo (bool enable)
	Enables or disabled Undo. More...

void	EnableInteraction (bool enable)
	Enables/disables the state machine. In un-enabled state it won't react to any events. More...

Public Member Functions inherited from mitk::InteractionEventHandler
bool	SetEventConfig (const std::string &filename, const us::Module *module=nullptr)
	Loads a configuration from an XML resource. More...

bool	SetEventConfig (const EventConfig &config)
	Loads a configuration from an EventConfig object. More...

EventConfig	GetEventConfig () const
	Returns the current configuration. More...

bool	AddEventConfig (const std::string &filename, const us::Module *module=nullptr)
	This method extends the configuration. More...

bool	AddEventConfig (const EventConfig &config)
	This method extends the configuration. The configuration from the EventConfig object is loaded and only the ones conflicting are replaced by the new one. This way several configurations can be combined. More...

Public Member Functions inherited from mitk::InteractionEventObserver
	InteractionEventObserver ()

virtual	~InteractionEventObserver ()

void	Disable ()

void	Enable ()

bool	IsEnabled () const

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from mitk::SegTool2D
static bool	DetermineAffectedImageSlice (const Image image, const PlaneGeometry plane, int &affectedDimension, int &affectedSlice)
	Calculates for a given Image and PlaneGeometry, which slice of the image (in index corrdinates) is meant by the plane. More...

static void	UpdateSurfaceInterpolation (const Image slice, const Image workingImage, const PlaneGeometry *plane, bool detectIntersection)
	Updates the surface interpolation by extracting the contour form the given slice. More...

Static Public Member Functions inherited from mitk::EventStateMachine
static const char *	GetStaticNameOfClass ()

Static Public Member Functions inherited from mitk::InteractionEventHandler
static const char *	GetStaticNameOfClass ()

Protected Member Functions
	FastMarchingTool ()

	~FastMarchingTool () override

void	ConnectActionsAndFunctions () override

void	Activated () override
	Called when the tool gets activated. More...

void	Deactivated () override
	Called when the tool gets deactivated. More...

virtual void	Initialize ()

virtual void	BuildITKPipeline ()

virtual void	OnAddPoint (StateMachineAction , InteractionEvent interactionEvent)
	Add point action of StateMachine pattern. More...

virtual void	OnDelete (StateMachineAction , InteractionEvent interactionEvent)
	Delete action of StateMachine pattern. More...

void	Reset ()
	Reset all relevant inputs of the itk pipeline. More...

Protected Member Functions inherited from mitk::FeedbackContourTool
	FeedbackContourTool ()

	FeedbackContourTool (const char *)

	~FeedbackContourTool () override

ContourModel *	GetFeedbackContour ()

void	SetFeedbackContour (ContourModel::Pointer)

void	SetFeedbackContourVisible (bool)

void	SetFeedbackContourColor (float r, float g, float b)
	Provide values from 0.0 (black) to 1.0 (full color) More...

void	SetFeedbackContourColorDefault ()

void	Deactivated () override
	Called when the tool gets deactivated. More...

void	Activated () override
	Called when the tool gets activated. More...

ContourModel::Pointer	ProjectContourTo2DSlice (Image slice, ContourModel contourIn3D, bool correctionForIpSegmentation=false, bool constrainToInside=true)
	Projects a contour onto an image point by point. Converts from world to index coordinates. More...

ContourModel::Pointer	BackProjectContourFrom2DSlice (const BaseGeometry sliceGeometry, ContourModel contourIn2D, bool correctionForIpSegmentation=false)
	Projects a slice index coordinates of a contour back into world coordinates. More...

void	FillContourInSlice (ContourModel projectedContour, Image sliceImage, int paintingPixelValue=1)
	Fill a contour in a 2D slice with a specified pixel value. More...

void	FillContourInSlice (ContourModel projectedContour, unsigned int timeStep, Image sliceImage, int paintingPixelValue=1)
	Fill a contour in a 2D slice with a specified pixel value at a given time step. More...

Protected Member Functions inherited from mitk::SegTool2D
	SegTool2D ()

	SegTool2D (const char , const us::Module interactorModule=nullptr)

	~SegTool2D () override

bool	FilterEvents (InteractionEvent interactionEvent, DataNode dataNode) override
	Filters events that cannot be handle by 2D segmentation tools. More...

Image::Pointer	GetAffectedImageSliceAs2DImage (const InteractionPositionEvent positionEvent, const Image image, unsigned int component=0)
	Extract the slice of an image that the user just scribbles on. The given component denotes the vector component of a dwi-image. More...

Image::Pointer	GetAffectedImageSliceAs2DImage (const PlaneGeometry planeGeometry, const Image image, unsigned int timeStep, unsigned int component=0)
	Extract the slice of an image cut by given plane. The given component denotes the vector component of a dwi-image. More...

Image::Pointer	GetAffectedWorkingSlice (const InteractionPositionEvent *)
	Extract the slice of the currently selected working image that the user just scribbles on. More...

Image::Pointer	GetAffectedReferenceSlice (const InteractionPositionEvent *)
	Extract the slice of the currently selected reference image that the user just scribbles on. More...

void	WriteBackSegmentationResult (const InteractionPositionEvent , Image )

void	WriteBackSegmentationResult (const PlaneGeometry planeGeometry, Image , unsigned int timeStep)

void	WriteBackSegmentationResult (const std::vector< SliceInformation > &sliceList, bool writeSliceToVolume=true)

void	WritePreviewOnWorkingImage (Image targetSlice, Image sourceSlice, Image *workingImage, int paintingPixelValue, int timestep)

void	WriteSliceToVolume (const SliceInformation &sliceInfo)

int	AddContourmarker ()
	Adds a new node called Contourmarker to the datastorage which holds a mitk::PlanarFigure. By selecting this node the slicestack will be reoriented according to the PlanarFigure's Geometry. More...

void	InteractiveSegmentationBugMessage (const std::string &message)

Protected Member Functions inherited from mitk::Tool
virtual void	SetToolManager (ToolManager *)

void	ConnectActionsAndFunctions () override

	Tool ()

	Tool (const char , const us::Module interactorModule=nullptr)

	~Tool () override

void	Notify (InteractionEvent *interactionEvent, bool isHandled) override

bool	FilterEvents (InteractionEvent , DataNode ) override

Protected Member Functions inherited from mitk::EventStateMachine
	EventStateMachine ()

	~EventStateMachine () override

void	AddActionFunction (const std::string &action, TActionFunctor *functor)

void	AddActionFunction (const std::string &action, const ActionFunctionDelegate &delegate)

void	AddConditionFunction (const std::string &condition, const ConditionFunctionDelegate &delegate)

StateMachineState *	GetCurrentState () const

void	ResetToStartState ()
	ResetToStartState Reset state machine to it initial starting state. More...

virtual bool	CheckCondition (const StateMachineCondition &condition, const InteractionEvent *interactionEvent)

virtual void	ExecuteAction (StateMachineAction action, InteractionEvent interactionEvent)

void	SetMouseCursor (const char *xpm[], int hotspotX, int hotspotY)
	Sets the specified mouse cursor. More...

void	ResetMouseCursor ()
	Resets the mouse cursor (if modified by the SlicesCoordinator) to its original state. More...

StateMachineTransition *	GetExecutableTransition (InteractionEvent *event)
	Returns the executable transition for the given event. More...

Protected Member Functions inherited from mitk::InteractionEventHandler
	InteractionEventHandler ()

	~InteractionEventHandler () override

PropertyList::Pointer	GetAttributes () const

std::string	MapToEventVariant (InteractionEvent *interactionEvent)

virtual void	ConfigurationChanged ()

Protected Attributes
mitk::ToolCommand::Pointer	m_ProgressCommand

Image::Pointer	m_ReferenceImage

Image::Pointer	m_ReferenceImageSlice

bool	m_NeedUpdate

int	m_CurrentTimeStep

mitk::InteractionPositionEvent::Pointer	m_PositionEvent

float	m_LowerThreshold

float	m_UpperThreshold

float	m_StoppingValue

float	m_Sigma

float	m_Alpha

float	m_Beta

NodeContainer::Pointer	m_SeedContainer

InternalImageType::Pointer	m_ReferenceImageSliceAsITK

mitk::DataNode::Pointer	m_ResultImageNode

mitk::DataNode::Pointer	m_SeedsAsPointSetNode

mitk::PointSet::Pointer	m_SeedsAsPointSet

ThresholdingFilterType::Pointer	m_ThresholdFilter

SmoothingFilterType::Pointer	m_SmoothFilter

GradientFilterType::Pointer	m_GradientMagnitudeFilter

SigmoidFilterType::Pointer	m_SigmoidFilter

FastMarchingFilterType::Pointer	m_FastMarchingFilter

Protected Attributes inherited from mitk::FeedbackContourTool
ContourModel::Pointer	m_FeedbackContour

DataNode::Pointer	m_FeedbackContourNode

bool	m_FeedbackContourVisible

Protected Attributes inherited from mitk::SegTool2D
BaseRenderer *	m_LastEventSender

unsigned int	m_LastEventSlice

Protected Attributes inherited from mitk::Tool
std::string	m_EventConfig
	Let subclasses change their event configuration. More...

ToolManager *	m_ToolManager

Protected Attributes inherited from mitk::EventStateMachine
bool	m_IsActive

UndoController *	m_UndoController

bool	m_UndoEnabled

Additional Inherited Members
Public Attributes inherited from mitk::Tool
Message	GUIProcessEventsMessage
	To let GUI process new events (e.g. qApp->processEvents() ) More...

Message1< std::string >	ErrorMessage
	To send error messages (to be shown by some GUI) More...

Message1< bool >	CurrentlyBusy
	To send whether the tool is busy (to be shown by some GUI) More...

Message1< std::string >	GeneralMessage
	To send general messages (to be shown by some GUI) More...

Protected Types inherited from mitk::EventStateMachine
typedef MessageAbstractDelegate2< StateMachineAction , InteractionEvent , void >	ActionFunctionDelegate

typedef MessageAbstractDelegate1< const InteractionEvent *, bool >	ConditionFunctionDelegate

Detailed Description

FastMarching semgentation tool.

The segmentation is done by setting one or more seed points on the image and adapting the time range and threshold. The pipeline is: Smoothing->GradientMagnitude->SigmoidFunction->FastMarching->Threshold The resulting binary image is seen as a segmentation of an object.

For detailed documentation see ITK Software Guide section 9.3.1 Fast Marching Segmentation.

Definition at line 53 of file mitkFastMarchingTool.h.

Member Typedef Documentation

◆ FastMarchingFilterType

typedef itk::FastMarchingImageFilter<InternalImageType, InternalImageType> mitk::FastMarchingTool::FastMarchingFilterType

Definition at line 72 of file mitkFastMarchingTool.h.

◆ GradientFilterType

typedef itk::GradientMagnitudeRecursiveGaussianImageFilter<InternalImageType, InternalImageType> mitk::FastMarchingTool::GradientFilterType

Definition at line 70 of file mitkFastMarchingTool.h.

◆ InternalImageType

typedef itk::Image<InternalPixelType, 2> mitk::FastMarchingTool::InternalImageType

Definition at line 64 of file mitkFastMarchingTool.h.

◆ InternalPixelType

typedef float mitk::FastMarchingTool::InternalPixelType

Definition at line 60 of file mitkFastMarchingTool.h.

◆ NodeContainer

typedef FastMarchingFilterType::NodeContainer mitk::FastMarchingTool::NodeContainer

Definition at line 73 of file mitkFastMarchingTool.h.

◆ NodeType

typedef FastMarchingFilterType::NodeType mitk::FastMarchingTool::NodeType

Definition at line 74 of file mitkFastMarchingTool.h.

◆ OutputImageType

typedef itk::Image<OutputPixelType, 2> mitk::FastMarchingTool::OutputImageType

Definition at line 66 of file mitkFastMarchingTool.h.

◆ OutputPixelType

typedef mitk::Tool::DefaultSegmentationDataType mitk::FastMarchingTool::OutputPixelType

Definition at line 65 of file mitkFastMarchingTool.h.

◆ SigmoidFilterType

typedef itk::SigmoidImageFilter<InternalImageType, InternalImageType> mitk::FastMarchingTool::SigmoidFilterType

Definition at line 71 of file mitkFastMarchingTool.h.

◆ SmoothingFilterType

typedef itk::CurvatureAnisotropicDiffusionImageFilter<InternalImageType, InternalImageType> mitk::FastMarchingTool::SmoothingFilterType

Definition at line 69 of file mitkFastMarchingTool.h.

◆ ThresholdingFilterType

typedef itk::BinaryThresholdImageFilter<InternalImageType, OutputImageType> mitk::FastMarchingTool::ThresholdingFilterType

Definition at line 68 of file mitkFastMarchingTool.h.

Constructor & Destructor Documentation

◆ FastMarchingTool()

mitk::FastMarchingTool::FastMarchingTool ( )

protected

Definition at line 34 of file mitkFastMarchingTool.cpp.

◆ ~FastMarchingTool()

mitk::FastMarchingTool::~FastMarchingTool ( )

overrideprotected

Definition at line 48 of file mitkFastMarchingTool.cpp.

References m_FastMarchingFilter, m_GradientMagnitudeFilter, m_SigmoidFilter, and m_SmoothFilter.

Member Function Documentation

◆ Activated()

void mitk::FastMarchingTool::Activated ( )

overrideprotectedvirtual

Called when the tool gets activated.

Derived tools should call their parents implementation at the beginning of the overriding function.

Reimplemented from mitk::Tool.

Definition at line 216 of file mitkFastMarchingTool.cpp.

References mitk::DataStorage::Add(), mitk::ToolManager::GetDataStorage(), mitk::ToolManager::GetReferenceData(), Initialize(), m_ResultImageNode, m_SeedsAsPointSet, m_SeedsAsPointSetNode, mitk::Tool::m_ToolManager, mitk::DataNode::New(), and mitk::PointSet::New().

◆ BuildITKPipeline()

void mitk::FastMarchingTool::BuildITKPipeline ( )

protectedvirtual

Definition at line 94 of file mitkFastMarchingTool.cpp.

References mitk::CastToItkImage(), mitk::SegTool2D::GetAffectedReferenceSlice(), m_Alpha, m_Beta, m_FastMarchingFilter, m_GradientMagnitudeFilter, m_LowerThreshold, m_PositionEvent, m_ProgressCommand, m_ReferenceImageSlice, m_ReferenceImageSliceAsITK, m_SeedContainer, m_Sigma, m_SigmoidFilter, m_SmoothFilter, m_StoppingValue, m_ThresholdFilter, m_UpperThreshold, and mitk::ToolCommand::New().

Referenced by OnAddPoint().

◆ ClearSeeds()

void mitk::FastMarchingTool::ClearSeeds ( )

Clear all seed points.

Definition at line 440 of file mitkFastMarchingTool.cpp.

References m_FastMarchingFilter, m_NeedUpdate, m_SeedContainer, m_SeedsAsPointSet, m_SeedsAsPointSetNode, and mitk::PointSet::New().

Referenced by ConfirmSegmentation(), Deactivated(), OnAddPoint(), and Reset().

◆ Clone()

Pointer mitk::FastMarchingTool::Clone ( ) const

◆ ConfirmSegmentation()

void mitk::FastMarchingTool::ConfirmSegmentation ( )

virtual

Adds the feedback image to the current working image.

Definition at line 265 of file mitkFastMarchingTool.cpp.

References mitk::ToolManager::ActivateTool(), mitk::CastToItkImage(), mitk::CastToMitkImage(), ClearSeeds(), mitk::SegTool2D::GetAffectedImageSliceAs2DImage(), mitk::RenderingManager::GetInstance(), mitk::ToolManager::GetWorkingData(), m_CurrentTimeStep, m_ResultImageNode, m_ThresholdFilter, mitk::Tool::m_ToolManager, mitk::Image::New(), mitk::RenderingManager::RequestUpdateAll(), and mitk::SegTool2D::WriteBackSegmentationResult().

◆ ConnectActionsAndFunctions()

void mitk::FastMarchingTool::ConnectActionsAndFunctions ( )

overrideprotectedvirtual

Is called after loading a statemachine. Overwrite this function in specific interactor implementations. Connect actions and functions using the CONNECT_FUNCTION macro within this function.

Reimplemented from mitk::EventStateMachine.

Definition at line 63 of file mitkFastMarchingTool.cpp.

References CONNECT_FUNCTION, OnAddPoint(), and OnDelete().

◆ Deactivated()

void mitk::FastMarchingTool::Deactivated ( )

overrideprotectedvirtual

Called when the tool gets deactivated.

Derived tools should call their parents implementation at the end of the overriding function.

Reimplemented from mitk::Tool.

Definition at line 239 of file mitkFastMarchingTool.cpp.

References ClearSeeds(), mitk::ToolManager::GetDataStorage(), mitk::RenderingManager::GetInstance(), m_ResultImageNode, m_SeedsAsPointSetNode, mitk::Tool::m_ToolManager, mitk::DataStorage::Remove(), and mitk::RenderingManager::RequestUpdateAll().

◆ GetCursorIconResource()

us::ModuleResource mitk::FastMarchingTool::GetCursorIconResource ( ) const

overridevirtual

Returns the path of a cursor icon.

Reimplemented from mitk::Tool.

Definition at line 82 of file mitkFastMarchingTool.cpp.

References ModuleContext::GetModule(), us::GetModuleContext(), and us::Module::GetResource().

◆ GetIconResource()

us::ModuleResource mitk::FastMarchingTool::GetIconResource ( ) const

overridevirtual

Returns the tool button icon of the tool wrapped by a usModuleResource.

Returns: a valid ModuleResource or an invalid if this function is not reimplemented

Reimplemented from mitk::Tool.

Definition at line 75 of file mitkFastMarchingTool.cpp.

References ModuleContext::GetModule(), us::GetModuleContext(), and us::Module::GetResource().

◆ GetName()

const char * mitk::FastMarchingTool::GetName ( ) const

overridevirtual

Returns the name of this tool. Make it short!

This name has to fit into some kind of button in most applications, so take some time to think of a good name!

Implements mitk::Tool.

Definition at line 89 of file mitkFastMarchingTool.cpp.

◆ GetXPM()

const char ** mitk::FastMarchingTool::GetXPM ( ) const

overridevirtual

Returns an icon in the XPM format.

This icon has to fit into some kind of button in most applications, so make it smaller than 25x25 pixels.

XPM is e.g. supported by The Gimp. But if you open any XPM file in your text editor, you will see that you could also "draw" it with an editor.

Implements mitk::Tool.

Definition at line 70 of file mitkFastMarchingTool.cpp.

◆ Initialize()

void mitk::FastMarchingTool::Initialize ( )

protectedvirtual

Definition at line 251 of file mitkFastMarchingTool.cpp.

References mitk::ToolManager::GetReferenceData(), m_CurrentTimeStep, m_NeedUpdate, m_ReferenceImage, mitk::Tool::m_ToolManager, and mitk::ImageTimeSelector::New().

Referenced by Activated(), and SetCurrentTimeStep().

◆ mitkClassMacro()

mitk::FastMarchingTool::mitkClassMacro	(	FastMarchingTool	,
		FeedbackContourTool
	)

◆ New()

static Pointer mitk::FastMarchingTool::New ( )

static

◆ OnAddPoint()

void mitk::FastMarchingTool::OnAddPoint	(	StateMachineAction *	,
		InteractionEvent *	interactionEvent
	)

protectedvirtual

Add point action of StateMachine pattern.

Definition at line 329 of file mitkFastMarchingTool.cpp.

References BuildITKPipeline(), ClearSeeds(), mitk::RenderingManager::GetInstance(), mitk::BaseRenderer::GetSlice(), m_FastMarchingFilter, mitk::SegTool2D::m_LastEventSender, mitk::SegTool2D::m_LastEventSlice, m_NeedUpdate, m_PositionEvent, m_ReferenceImageSlice, m_SeedContainer, m_SeedsAsPointSet, mitk::InteractionPositionEvent::New(), mitk::RenderingManager::RequestUpdateAll(), and Update().

Referenced by ConnectActionsAndFunctions().

◆ OnDelete()

void mitk::FastMarchingTool::OnDelete	(	StateMachineAction *	,
		InteractionEvent *	interactionEvent
	)

protectedvirtual

Delete action of StateMachine pattern.

Definition at line 380 of file mitkFastMarchingTool.cpp.

References mitk::RenderingManager::GetInstance(), m_FastMarchingFilter, m_NeedUpdate, m_SeedContainer, m_SeedsAsPointSet, mitk::RenderingManager::RequestUpdateAll(), and Update().

Referenced by ConnectActionsAndFunctions().

◆ Reset()

void mitk::FastMarchingTool::Reset ( void )

protected

Reset all relevant inputs of the itk pipeline.

Definition at line 462 of file mitkFastMarchingTool.cpp.

References ClearSeeds(), mitk::RenderingManager::GetInstance(), m_ResultImageNode, and mitk::RenderingManager::RequestUpdateAll().

◆ SetAlpha()

void mitk::FastMarchingTool::SetAlpha ( double value )

Set parameter used in Fast Marching filter.

Definition at line 196 of file mitkFastMarchingTool.cpp.

References m_Alpha, m_NeedUpdate, and m_SigmoidFilter.

◆ SetBeta()

void mitk::FastMarchingTool::SetBeta ( double value )

Set parameter used in Fast Marching filter.

Definition at line 176 of file mitkFastMarchingTool.cpp.

References m_Beta, m_NeedUpdate, and m_SigmoidFilter.

◆ SetCurrentTimeStep()

void mitk::FastMarchingTool::SetCurrentTimeStep ( int t )

virtual

Set the working time step.

Definition at line 472 of file mitkFastMarchingTool.cpp.

References Initialize(), and m_CurrentTimeStep.

◆ SetLowerThreshold()

void mitk::FastMarchingTool::SetLowerThreshold ( double value )

Set parameter used in Threshold filter.

Definition at line 166 of file mitkFastMarchingTool.cpp.

References m_LowerThreshold, m_NeedUpdate, and m_ThresholdFilter.

◆ SetSigma()

void mitk::FastMarchingTool::SetSigma ( double value )

Set parameter used in Gradient Magnitude filter.

Definition at line 186 of file mitkFastMarchingTool.cpp.

References m_GradientMagnitudeFilter, m_NeedUpdate, and m_Sigma.

◆ SetStoppingValue()

void mitk::FastMarchingTool::SetStoppingValue ( double value )

Set parameter used in Fast Marching filter.

Definition at line 206 of file mitkFastMarchingTool.cpp.

References m_FastMarchingFilter, m_NeedUpdate, and m_StoppingValue.

◆ SetUpperThreshold()

void mitk::FastMarchingTool::SetUpperThreshold ( double value )

Set parameter used in Threshold filter.

Definition at line 156 of file mitkFastMarchingTool.cpp.

References m_NeedUpdate, m_ThresholdFilter, and m_UpperThreshold.

◆ Update()

void mitk::FastMarchingTool::Update ( )

Updates the itk pipeline and shows the result of FastMarching.

Definition at line 400 of file mitkFastMarchingTool.cpp.

References mitk::CastToMitkImage(), mitk::Tool::CurrentlyBusy, mitk::Tool::ErrorMessage, mitk::RenderingManager::GetInstance(), m_NeedUpdate, m_ProgressCommand, m_ReferenceImageSlice, m_ResultImageNode, m_ThresholdFilter, MITK_ERROR, mitk::Image::New(), mitk::RenderingManager::RequestUpdateAll(), and mitk::Message1< T, A >::Send().

Referenced by OnAddPoint(), and OnDelete().

Member Data Documentation

◆ m_Alpha

float mitk::FastMarchingTool::m_Alpha

protected

Definition at line 151 of file mitkFastMarchingTool.h.

Referenced by BuildITKPipeline(), and SetAlpha().

◆ m_Beta

float mitk::FastMarchingTool::m_Beta

protected

Definition at line 152 of file mitkFastMarchingTool.h.

Referenced by BuildITKPipeline(), and SetBeta().

◆ m_CurrentTimeStep

int mitk::FastMarchingTool::m_CurrentTimeStep

protected

Definition at line 143 of file mitkFastMarchingTool.h.

Referenced by ConfirmSegmentation(), Initialize(), and SetCurrentTimeStep().

◆ m_FastMarchingFilter

FastMarchingFilterType::Pointer mitk::FastMarchingTool::m_FastMarchingFilter

protected

Definition at line 167 of file mitkFastMarchingTool.h.

Referenced by BuildITKPipeline(), ClearSeeds(), OnAddPoint(), OnDelete(), SetStoppingValue(), and ~FastMarchingTool().

◆ m_GradientMagnitudeFilter

GradientFilterType::Pointer mitk::FastMarchingTool::m_GradientMagnitudeFilter

protected

Definition at line 165 of file mitkFastMarchingTool.h.

Referenced by BuildITKPipeline(), SetSigma(), and ~FastMarchingTool().

◆ m_LowerThreshold

float mitk::FastMarchingTool::m_LowerThreshold

protected

Definition at line 147 of file mitkFastMarchingTool.h.

Referenced by BuildITKPipeline(), and SetLowerThreshold().

◆ m_NeedUpdate

bool mitk::FastMarchingTool::m_NeedUpdate

protected

Definition at line 141 of file mitkFastMarchingTool.h.

Referenced by ClearSeeds(), Initialize(), OnAddPoint(), OnDelete(), SetAlpha(), SetBeta(), SetLowerThreshold(), SetSigma(), SetStoppingValue(), SetUpperThreshold(), and Update().

◆ m_PositionEvent

mitk::InteractionPositionEvent::Pointer mitk::FastMarchingTool::m_PositionEvent

protected

Definition at line 145 of file mitkFastMarchingTool.h.

Referenced by BuildITKPipeline(), and OnAddPoint().

◆ m_ProgressCommand

mitk::ToolCommand::Pointer mitk::FastMarchingTool::m_ProgressCommand

protected

Definition at line 136 of file mitkFastMarchingTool.h.

Referenced by BuildITKPipeline(), and Update().

◆ m_ReferenceImage

Image::Pointer mitk::FastMarchingTool::m_ReferenceImage

protected

Definition at line 138 of file mitkFastMarchingTool.h.

Referenced by Initialize().

◆ m_ReferenceImageSlice

Image::Pointer mitk::FastMarchingTool::m_ReferenceImageSlice

protected

Definition at line 139 of file mitkFastMarchingTool.h.

Referenced by BuildITKPipeline(), OnAddPoint(), and Update().

◆ m_ReferenceImageSliceAsITK

InternalImageType::Pointer mitk::FastMarchingTool::m_ReferenceImageSliceAsITK

protected

Definition at line 156 of file mitkFastMarchingTool.h.

Referenced by BuildITKPipeline().

◆ m_ResultImageNode

mitk::DataNode::Pointer mitk::FastMarchingTool::m_ResultImageNode

protected

Definition at line 158 of file mitkFastMarchingTool.h.

Referenced by Activated(), ConfirmSegmentation(), Deactivated(), Reset(), and Update().

◆ m_SeedContainer

NodeContainer::Pointer mitk::FastMarchingTool::m_SeedContainer

protected

Definition at line 154 of file mitkFastMarchingTool.h.

Referenced by BuildITKPipeline(), ClearSeeds(), OnAddPoint(), and OnDelete().

◆ m_SeedsAsPointSet

mitk::PointSet::Pointer mitk::FastMarchingTool::m_SeedsAsPointSet

protected

Definition at line 161 of file mitkFastMarchingTool.h.

Referenced by Activated(), ClearSeeds(), OnAddPoint(), and OnDelete().

◆ m_SeedsAsPointSetNode

mitk::DataNode::Pointer mitk::FastMarchingTool::m_SeedsAsPointSetNode

protected

Definition at line 160 of file mitkFastMarchingTool.h.

Referenced by Activated(), ClearSeeds(), and Deactivated().

◆ m_Sigma

float mitk::FastMarchingTool::m_Sigma

protected

Definition at line 150 of file mitkFastMarchingTool.h.

Referenced by BuildITKPipeline(), and SetSigma().

◆ m_SigmoidFilter

SigmoidFilterType::Pointer mitk::FastMarchingTool::m_SigmoidFilter

protected

Definition at line 166 of file mitkFastMarchingTool.h.

Referenced by BuildITKPipeline(), SetAlpha(), SetBeta(), and ~FastMarchingTool().

◆ m_SmoothFilter

SmoothingFilterType::Pointer mitk::FastMarchingTool::m_SmoothFilter

protected

Definition at line 164 of file mitkFastMarchingTool.h.

Referenced by BuildITKPipeline(), and ~FastMarchingTool().

◆ m_StoppingValue

float mitk::FastMarchingTool::m_StoppingValue

protected

Definition at line 149 of file mitkFastMarchingTool.h.

Referenced by BuildITKPipeline(), and SetStoppingValue().

◆ m_ThresholdFilter

ThresholdingFilterType::Pointer mitk::FastMarchingTool::m_ThresholdFilter

protected

Definition at line 163 of file mitkFastMarchingTool.h.

Referenced by BuildITKPipeline(), ConfirmSegmentation(), SetLowerThreshold(), SetUpperThreshold(), and Update().

◆ m_UpperThreshold

float mitk::FastMarchingTool::m_UpperThreshold

protected

Definition at line 148 of file mitkFastMarchingTool.h.

Referenced by BuildITKPipeline(), and SetUpperThreshold().

The documentation for this class was generated from the following files:

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ FastMarchingFilterType

◆ GradientFilterType

◆ InternalImageType

◆ InternalPixelType

◆ NodeContainer

◆ NodeType

◆ OutputImageType

◆ OutputPixelType

◆ SigmoidFilterType

◆ SmoothingFilterType

◆ ThresholdingFilterType

Constructor & Destructor Documentation

◆ FastMarchingTool()

◆ ~FastMarchingTool()

Member Function Documentation

◆ Activated()

◆ BuildITKPipeline()

◆ ClearSeeds()

◆ Clone()

◆ ConfirmSegmentation()

◆ ConnectActionsAndFunctions()

◆ Deactivated()

◆ GetCursorIconResource()

◆ GetIconResource()

◆ GetName()

◆ GetXPM()

◆ Initialize()

◆ mitkClassMacro()

◆ New()

◆ OnAddPoint()

◆ OnDelete()

◆ Reset()

◆ SetAlpha()

◆ SetBeta()

◆ SetCurrentTimeStep()

◆ SetLowerThreshold()

◆ SetSigma()

◆ SetStoppingValue()

◆ SetUpperThreshold()

◆ Update()

Member Data Documentation

◆ m_Alpha

◆ m_Beta

◆ m_CurrentTimeStep

◆ m_FastMarchingFilter

◆ m_GradientMagnitudeFilter

◆ m_LowerThreshold

◆ m_NeedUpdate

◆ m_PositionEvent

◆ m_ProgressCommand

◆ m_ReferenceImage

◆ m_ReferenceImageSlice

◆ m_ReferenceImageSliceAsITK

◆ m_ResultImageNode

◆ m_SeedContainer

◆ m_SeedsAsPointSet

◆ m_SeedsAsPointSetNode

◆ m_Sigma

◆ m_SigmoidFilter

◆ m_SmoothFilter

◆ m_StoppingValue

◆ m_ThresholdFilter

◆ m_UpperThreshold