Data structure which stores a set of points. Superclass of mitk::Mesh. More...

#include <mitkPointSet.h>

Inheritance diagram for mitk::PointSet:

[legend]

Collaboration diagram for mitk::PointSet:

[legend]

Classes
struct	CellDataType

struct	PointDataType
	struct for data of a point More...

Public Types
typedef PointSet	Self

typedef BaseData	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef mitk::ScalarType	CoordinateType

typedef mitk::ScalarType	InterpolationWeightType

typedef std::vector< unsigned int >	SelectedLinesType
	cellDataType, that stores all indexes of the lines, that are selected e.g.: points A,B and C.Between A and B there is a line with index 0. If vector of cellData contains 1 and 2, then the lines between B and C and C and A is selected. More...

typedef SelectedLinesType::iterator	SelectedLinesIter

typedef itk::DefaultDynamicMeshTraits< PointDataType, PointDimension, MaxTopologicalDimension, CoordinateType, InterpolationWeightType, CellDataType >	MeshTraits

typedef itk::Mesh< PointDataType, PointDimension, MeshTraits >	MeshType

typedef MeshType	DataType

typedef Point3D	PointType

typedef DataType::PointIdentifier	PointIdentifier

typedef DataType::PointsContainer	PointsContainer

typedef DataType::PointsContainerIterator	PointsIterator

typedef DataType::PointsContainer::ConstIterator	PointsConstIterator

typedef DataType::PointDataContainer	PointDataContainer

typedef DataType::PointDataContainerIterator	PointDataIterator

typedef DataType::PointDataContainerIterator	PointDataConstIterator

Public Types inherited from mitk::BaseData
typedef BaseData	Self

typedef itk::DataObject	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

Public Types inherited from mitk::Identifiable
using	UIDType = std::string

Public Member Functions
virtual std::vector< std::string >	GetClassHierarchy () const override

virtual const char *	GetClassName () const

Pointer	Clone () const

void	Expand (unsigned int timeSteps) override
	Expands the TimeGeometry to a number of TimeSteps. More...

void	ExecuteOperation (Operation *operation) override
	executes the given Operation More...

virtual int	GetSize (unsigned int t=0) const
	returns the current size of the point-list More...

virtual unsigned int	GetPointSetSeriesSize () const

virtual DataType::Pointer	GetPointSet (int t=0) const
	returns the pointset More...

PointsIterator	Begin (int t=0)

PointsConstIterator	Begin (int t=0) const

PointsIterator	End (int t=0)

PointsConstIterator	End (int t=0) const

PointsIterator	GetMaxId (int t=0)
	Get an iterator to the max ID element if existent. Return End() otherwise. More...

PointType	GetPoint (PointIdentifier id, int t=0) const
	Get the point with ID id in world coordinates. More...

bool	GetPointIfExists (PointIdentifier id, PointType *point, int t=0) const
	Get the point with ID id in world coordinates. More...

void	SetPoint (PointIdentifier id, PointType point, int t=0)
	Set the given point in world coordinate system into the itkPointSet. More...

void	SetPoint (PointIdentifier id, PointType point, PointSpecificationType spec, int t=0)
	Set the given point in world coordinate system with the given PointSpecificationType. More...

void	InsertPoint (PointIdentifier id, PointType point, int t=0)
	Set the given point in world coordinate system into the itkPointSet. More...

void	InsertPoint (PointIdentifier id, PointType point, PointSpecificationType spec, int t)
	Set the given point in world coordinate system with given PointSpecificationType. More...

PointIdentifier	InsertPoint (PointType point, int t=0)
	Insert the given point in world coordinate system with incremented max id at time step t. More...

bool	RemovePointIfExists (PointIdentifier id, int t=0)
	Remove point with given id at timestep t, if existent. More...

PointsIterator	RemovePointAtEnd (int t=0)
	Remove max id point at timestep t and return iterator to precedent point. More...

bool	SwapPointPosition (PointIdentifier id, bool moveUpwards, int t=0)
	Swap a point at the given position (id) with the upper point (moveUpwards=true) or with the lower point (moveUpwards=false). If upper or lower index does not exist false is returned, if swap was successful true. More...

virtual int	SearchSelectedPoint (int t=0) const
	searches a selected point and returns the id of that point. If no point is found, then -1 is returned More...

virtual bool	IndexExists (int position, int t=0) const
	returns true if a point exists at this position More...

virtual bool	GetSelectInfo (int position, int t=0) const
	to get the state selected/unselected of the point on the position More...

virtual void	SetSelectInfo (int position, bool selected, int t=0)

virtual PointSpecificationType	GetSpecificationTypeInfo (int position, int t) const
	to get the type of the point at the position and the moment More...

virtual int	GetNumberOfSelected (int t=0) const
	returns the number of selected points More...

int	SearchPoint (Point3D point, ScalarType distance, int t=0) const
	searches a point in the list == point +/- distance More...

bool	IsEmptyTimeStep (unsigned int t) const override
	Check whether object contains data (at a specified time), e.g., a set of points may be empty. More...

void	UpdateOutputInformation () override

void	SetRequestedRegionToLargestPossibleRegion () override
	Set the RequestedRegion to the LargestPossibleRegion. More...

bool	RequestedRegionIsOutsideOfTheBufferedRegion () override
	Determine whether the RequestedRegion is outside of the BufferedRegion. More...

bool	VerifyRequestedRegion () override
	Verify that the RequestedRegion is within the LargestPossibleRegion. More...

void	SetRequestedRegion (const itk::DataObject *data) override
	Set the requested region from this data object to match the requested region of the data object passed in as a parameter. More...

virtual void	OnPointSetChange ()

Public Member Functions inherited from mitk::BaseData
BaseProperty::ConstPointer	GetConstProperty (const std::string &propertyKey, const std::string &contextName="", bool fallBackOnDefaultContext=true) const override
	Get property by its key. More...

std::vector< std::string >	GetPropertyKeys (const std::string &contextName="", bool includeDefaultContext=false) const override
	Query keys of existing properties. More...

std::vector< std::string >	GetPropertyContextNames () const override
	Query names of existing contexts. More...

BaseProperty *	GetNonConstProperty (const std::string &propertyKey, const std::string &contextName="", bool fallBackOnDefaultContext=true) override
	Get property by its key. More...

void	SetProperty (const std::string &propertyKey, BaseProperty *property, const std::string &contextName="", bool fallBackOnDefaultContext=false) override
	Add new or change existent property. More...

void	RemoveProperty (const std::string &propertyKey, const std::string &contextName="", bool fallBackOnDefaultContext=false) override
	Removes a property. If the property does not exist, nothing will be done. More...

const mitk::TimeGeometry *	GetTimeGeometry () const
	Return the TimeGeometry of the data as const pointer. More...

const mitk::TimeGeometry *	GetTimeSlicedGeometry () const
	Return the TimeGeometry of the data as const pointer. More...

mitk::TimeGeometry *	GetTimeGeometry ()
	Return the TimeGeometry of the data as pointer. More...

const mitk::TimeGeometry *	GetUpdatedTimeGeometry ()
	Return the TimeGeometry of the data. More...

const mitk::TimeGeometry *	GetUpdatedTimeSliceGeometry ()
	Return the TimeGeometry of the data. More...

const mitk::BaseGeometry *	GetUpdatedGeometry (int t=0)
	Return the BaseGeometry of the data at time t. More...

mitk::BaseGeometry *	GetGeometry (int t=0) const
	Return the geometry, which is a TimeGeometry, of the data as non-const pointer. More...

void	UpdateOutputInformation () override
	Update the information for this BaseData (the geometry in particular) so that it can be used as an output of a BaseProcess. More...

void	CopyInformation (const itk::DataObject *data) override
	Copy information from the specified data set. More...

virtual bool	IsInitialized () const
	Check whether the data has been initialized, i.e., at least the Geometry and other header data has been set. More...

virtual void	Clear ()
	Calls ClearData() and InitializeEmpty();. More...

virtual bool	IsEmpty () const
	Check whether object contains data (at least at one point in time), e.g., a set of points may be empty. More...

virtual void	SetGeometry (BaseGeometry *aGeometry3D)
	Set the BaseGeometry of the data, which will be referenced (not copied!). Assumes the data object has only 1 time step ( is a 3D object ) and creates a new TimeGeometry which saves the given BaseGeometry. If an TimeGeometry has already been set for the object, it will be replaced after calling this function. More...

virtual void	SetTimeGeometry (TimeGeometry *geometry)
	Set the TimeGeometry of the data, which will be referenced (not copied!). More...

virtual void	SetClonedGeometry (const BaseGeometry *aGeometry3D)
	Set a clone of the provided Geometry as Geometry of the data. Assumes the data object has only 1 time step ( is a 3D object ) and creates a new TimeGeometry. If an TimeGeometry has already been set for the object, it will be replaced after calling this function. More...

virtual void	SetClonedTimeGeometry (const TimeGeometry *geometry)
	Set a clone of the provided TimeGeometry as TimeGeometry of the data. More...

virtual void	SetClonedGeometry (const BaseGeometry *aGeometry3D, unsigned int time)
	Set a clone of the provided geometry as BaseGeometry of a given time step. More...

mitk::PropertyList::Pointer	GetPropertyList () const
	Get the data's property list. More...

void	SetPropertyList (PropertyList *propertyList)
	Set the data's property list. More...

mitk::BaseProperty::Pointer	GetProperty (const char *propertyKey) const
	Get the property (instance of BaseProperty) with key propertyKey from the PropertyList, and set it to this, respectively;. More...

void	SetProperty (const char propertyKey, BaseProperty property)

virtual void	SetOrigin (const Point3D &origin)
	Convenience method for setting the origin of the BaseGeometry instances of all time steps. More...

itk::SmartPointer< mitk::BaseDataSource >	GetSource () const
	Get the process object that generated this data object. More...

unsigned int	GetTimeSteps () const
	Get the number of time steps from the TimeGeometry As the base data has not a data vector given by itself, the number of time steps is defined over the time sliced geometry. In sub classes, a better implementation could be over the length of the data vector. More...

unsigned long	GetMTime () const override
	Get the modified time of the last change of the contents this data object or its geometry. More...

void	Graft (const DataObject *) override

Public Member Functions inherited from mitk::OperationActor
	itkTypeMacroNoParent (OperationActor) virtual ~OperationActor()

Public Member Functions inherited from mitk::Identifiable
	Identifiable ()

	Identifiable (const UIDType &uid)

	Identifiable (const Identifiable &)=delete

	Identifiable (Identifiable &&) noexcept

virtual	~Identifiable ()

Identifiable &	operator= (const Identifiable &)=delete

Identifiable &	operator= (Identifiable &&other) noexcept

UIDType	GetUID () const
	Get unique ID of an object. More...

Public Member Functions inherited from mitk::IPropertyOwner
	~IPropertyOwner () override

Public Member Functions inherited from mitk::IPropertyProvider
virtual	~IPropertyProvider ()

Static Public Member Functions
static const char *	GetStaticNameOfClass ()

static Pointer	New ()

Static Public Member Functions inherited from mitk::BaseData
static const char *	GetStaticNameOfClass ()

Static Public Attributes
static const unsigned int	PointDimension

static const unsigned int	MaxTopologicalDimension

Protected Types
typedef std::vector< DataType::Pointer >	PointSetSeries

Protected Member Functions
virtual itk::LightObject::Pointer	InternalClone () const override

	PointSet ()

	PointSet (const PointSet &other)

	~PointSet () override

void	PrintSelf (std::ostream &os, itk::Indent indent) const override
	print content of the object to os More...

void	ClearData () override
	reset to non-initialized state, release memory More...

void	InitializeEmpty () override
	Pure virtual; Must be used in subclasses to get a data object to a valid state. Should at least create one empty object and call Superclass::InitializeTimeGeometry() to ensure an existing valid geometry. More...

bool	SwapPointContents (PointIdentifier id1, PointIdentifier id2, int t=0)
	swaps point coordinates and point data of the points with identifiers id1 and id2 More...

Protected Member Functions inherited from mitk::BaseData
	BaseData ()

	BaseData (const BaseData &other)

	~BaseData () override

virtual void	InitializeTimeGeometry (unsigned int timeSteps=1)
	Initialize the TimeGeometry for a number of time steps. The TimeGeometry is initialized empty and evenly timed. In many cases it will be necessary to overwrite this in sub-classes. More...

virtual void	InitializeTimeSlicedGeometry (unsigned int timeSteps=1)
	Initialize the TimeGeometry for a number of time steps. The TimeGeometry is initialized empty and evenly timed. In many cases it will be necessary to overwrite this in sub-classes. More...

void	PrintSelf (std::ostream &os, itk::Indent indent) const override

Protected Attributes
PointSetSeries	m_PointSetSeries

DataType::PointsContainer::Pointer	m_EmptyPointsContainer

bool	m_CalculateBoundingBox
	flag to indicate the right time to call SetBounds More...

Protected Attributes inherited from mitk::BaseData
bool	m_LastRequestedRegionWasOutsideOfTheBufferedRegion

unsigned int	m_SourceOutputIndexDuplicate

bool	m_Initialized

Detailed Description

Data structure which stores a set of points. Superclass of mitk::Mesh.

3D points are grouped within a point set; for time resolved usage, one point set is created and maintained per time step. A point entry consists of the point coordinates and point data.

The point data includes a point ID (unique identifier to address this point within the point set), the selection state of the point and the type of the point.

For further information about different point types see mitk::PointSpecificationType in mitkVector.h.

Inserting a point is accompanied by an event, containing an index. The new point is inserted into the list at the specified position. At the same time an internal ID is generated and stored for the point. Points at specific time steps are accessed by specifying the time step number (which defaults to 0).

The points of itk::PointSet stores the points in a pointContainer (MapContainer). The points are best accessed by using a ConstIterator (as defined in MapContainer); avoid access via index.

The class internally uses an itk::Mesh for each time step, because mitk::Mesh is derived from mitk::PointSet and needs the itk::Mesh structure which is also derived from itk::PointSet. Thus several typedefs which seem to be in wrong place, are declared here (for example SelectedLinesType).

mitkPointSetDisplayOptions

The default mappers for this data structure are mitk::PointSetGLMapper2D and mitk::PointSetVtkMapper3D. See these classes for display options which can can be set via properties.

Events

PointSet issues the following events, for which observers can register (the below events are grouped into a class hierarchy as indicated by identation level; e.g. PointSetSizeChangeEvent comprises PointSetAddEvent and PointSetRemoveEvent):

PointSetEvent subsumes all PointSet events PointSetMoveEvent issued when a point of the PointSet is moved PointSetSizeChangeEvent subsumes add and remove events PointSetAddEvent issued when a point is added to the PointSet PointSetRemoveEvent issued when a point is removed from the PointSet

Definition at line 75 of file mitkPointSet.h.

Member Typedef Documentation

◆ ConstPointer

typedef itk::SmartPointer<const Self> mitk::PointSet::ConstPointer

Definition at line 78 of file mitkPointSet.h.

◆ CoordinateType

typedef mitk::ScalarType mitk::PointSet::CoordinateType

Definition at line 82 of file mitkPointSet.h.

◆ DataType

typedef MeshType mitk::PointSet::DataType

Definition at line 131 of file mitkPointSet.h.

◆ InterpolationWeightType

typedef mitk::ScalarType mitk::PointSet::InterpolationWeightType

Definition at line 85 of file mitkPointSet.h.

◆ MeshTraits

typedef itk::DefaultDynamicMeshTraits<PointDataType, PointDimension, MaxTopologicalDimension, CoordinateType, InterpolationWeightType, CellDataType> mitk::PointSet::MeshTraits

Definition at line 128 of file mitkPointSet.h.

◆ MeshType

typedef itk::Mesh<PointDataType, PointDimension, MeshTraits> mitk::PointSet::MeshType

Definition at line 129 of file mitkPointSet.h.

◆ PointDataConstIterator

typedef DataType::PointDataContainerIterator mitk::PointSet::PointDataConstIterator

Definition at line 139 of file mitkPointSet.h.

◆ PointDataContainer

typedef DataType::PointDataContainer mitk::PointSet::PointDataContainer

Definition at line 137 of file mitkPointSet.h.

◆ PointDataIterator

typedef DataType::PointDataContainerIterator mitk::PointSet::PointDataIterator

Definition at line 138 of file mitkPointSet.h.

◆ Pointer

typedef itk::SmartPointer<Self> mitk::PointSet::Pointer

Definition at line 78 of file mitkPointSet.h.

◆ PointIdentifier

typedef DataType::PointIdentifier mitk::PointSet::PointIdentifier

Definition at line 133 of file mitkPointSet.h.

◆ PointsConstIterator

typedef DataType::PointsContainer::ConstIterator mitk::PointSet::PointsConstIterator

Definition at line 136 of file mitkPointSet.h.

◆ PointsContainer

typedef DataType::PointsContainer mitk::PointSet::PointsContainer

Definition at line 134 of file mitkPointSet.h.

◆ PointSetSeries

typedef std::vector<DataType::Pointer> mitk::PointSet::PointSetSeries

protected

Definition at line 284 of file mitkPointSet.h.

◆ PointsIterator

typedef DataType::PointsContainerIterator mitk::PointSet::PointsIterator

Definition at line 135 of file mitkPointSet.h.

◆ PointType

typedef Point3D mitk::PointSet::PointType

Definition at line 132 of file mitkPointSet.h.

◆ SelectedLinesIter

typedef SelectedLinesType::iterator mitk::PointSet::SelectedLinesIter

Definition at line 109 of file mitkPointSet.h.

◆ SelectedLinesType

typedef std::vector<unsigned int> mitk::PointSet::SelectedLinesType

cellDataType, that stores all indexes of the lines, that are selected e.g.: points A,B and C.Between A and B there is a line with index 0. If vector of cellData contains 1 and 2, then the lines between B and C and C and A is selected.

Definition at line 108 of file mitkPointSet.h.

◆ Self

typedef PointSet mitk::PointSet::Self

Definition at line 78 of file mitkPointSet.h.

◆ Superclass

typedef BaseData mitk::PointSet::Superclass

Definition at line 78 of file mitkPointSet.h.

Constructor & Destructor Documentation

◆ PointSet() [1/2]

mitk::PointSet::PointSet ( )

protected

Definition at line 20 of file mitkPointSet.cpp.

References InitializeEmpty().

◆ PointSet() [2/2]

mitk::PointSet::PointSet ( const PointSet & other )

protected

Definition at line 25 of file mitkPointSet.cpp.

References Begin(), End(), GetPointSet(), and m_PointSetSeries.

◆ ~PointSet()

mitk::PointSet::~PointSet ( )

overrideprotected

Definition at line 46 of file mitkPointSet.cpp.

References ClearData().

Member Function Documentation

◆ Begin() [1/2]

mitk::PointSet::PointsIterator mitk::PointSet::Begin ( int t = 0 )

Definition at line 137 of file mitkPointSet.cpp.

References m_EmptyPointsContainer, and m_PointSetSeries.

Referenced by mitk::Equal(), GetMaxId(), PointSet(), SearchPoint(), and mitk::Mesh::SearchSelectedCell().

◆ Begin() [2/2]

mitk::PointSet::PointsConstIterator mitk::PointSet::Begin ( int t = 0 ) const

Definition at line 146 of file mitkPointSet.cpp.

References m_EmptyPointsContainer, and m_PointSetSeries.

◆ ClearData()

void mitk::PointSet::ClearData ( )

overrideprotectedvirtual

reset to non-initialized state, release memory

Reimplemented from mitk::BaseData.

Definition at line 51 of file mitkPointSet.cpp.

References mitk::BaseData::ClearData(), and m_PointSetSeries.

Referenced by ~PointSet().

◆ Clone()

Pointer mitk::PointSet::Clone ( ) const

◆ End() [1/2]

mitk::PointSet::PointsIterator mitk::PointSet::End ( int t = 0 )

Definition at line 155 of file mitkPointSet.cpp.

References m_EmptyPointsContainer, and m_PointSetSeries.

Referenced by mitk::Equal(), GetMaxId(), InsertPoint(), and PointSet().

◆ End() [2/2]

mitk::PointSet::PointsConstIterator mitk::PointSet::End ( int t = 0 ) const

Definition at line 164 of file mitkPointSet.cpp.

References m_EmptyPointsContainer, and m_PointSetSeries.

◆ ExecuteOperation()

void mitk::PointSet::ExecuteOperation ( Operation * operation )

overridevirtual

executes the given Operation

Reimplemented from mitk::BaseData.

Reimplemented in mitk::Mesh.

Definition at line 560 of file mitkPointSet.cpp.

References Expand(), mitk::BaseData::GetGeometry(), mitk::Operation::GetOperationType(), mitk::BaseData::GetTimeGeometry(), mitk::BaseData::GetTimeSteps(), m_CalculateBoundingBox, m_PointSetSeries, MITK_ERROR, MITK_INFO, mitkCheckOperationTypeMacro, OnPointSetChange(), mitk::OpDESELECTPOINT, mitk::OpINSERT, mitk::OpMOVE, mitk::OpMOVEPOINTDOWN, mitk::OpMOVEPOINTUP, mitk::OpNOTHING, mitk::OpREMOVE, mitk::OpSELECTPOINT, mitk::OpSETPOINTTYPE, mitk::PointSet::PointDataType::pointSpec, mitk::PTUNDEFINED, mitk::PointSet::PointDataType::selected, SwapPointContents(), mitk::TimeGeometry::TimePointToTimeStep(), and mitk::BaseGeometry::WorldToIndex().

Referenced by mitk::ContourModelToPointSetFilter::GenerateData(), and SetSelectInfo().

◆ Expand()

void mitk::PointSet::Expand ( unsigned int timeSteps )

overridevirtual

Expands the TimeGeometry to a number of TimeSteps.

The method expands the TimeGeometry to the given number of TimeSteps, filling newly created elements with empty geometries. Sub-classes should override this method to handle the elongation of their data vectors, too. Note that a shrinking is neither possible nor intended.

Reimplemented from mitk::BaseData.

Definition at line 77 of file mitkPointSet.cpp.

References mitk::BaseData::Expand(), m_CalculateBoundingBox, and m_PointSetSeries.

Referenced by ExecuteOperation(), InsertPoint(), mitk::Mesh::SetMesh(), and SetPoint().

◆ GetClassHierarchy()

virtual std::vector<std::string> mitk::PointSet::GetClassHierarchy ( ) const

inlineoverridevirtual

Reimplemented from mitk::BaseData.

Definition at line 78 of file mitkPointSet.h.

◆ GetClassName()

virtual const char* mitk::PointSet::GetClassName ( ) const

virtual

Reimplemented from mitk::BaseData.

◆ GetMaxId()

mitk::PointSet::PointsIterator mitk::PointSet::GetMaxId ( int t = 0 )

Get an iterator to the max ID element if existent. Return End() otherwise.

Definition at line 173 of file mitkPointSet.cpp.

References Begin(), End(), m_EmptyPointsContainer, and m_PointSetSeries.

Referenced by QmitkPointListWidget::OnBtnAddPointManually().

◆ GetNumberOfSelected()

int mitk::PointSet::GetNumberOfSelected ( int t = 0 ) const

virtual

returns the number of selected points

Definition at line 522 of file mitkPointSet.cpp.

References m_PointSetSeries.

Referenced by QmitkPointListView::OnPointSetSelectionChanged().

◆ GetPoint()

mitk::PointSet::PointType mitk::PointSet::GetPoint	(	PointIdentifier	id,
		int	t = `0`
	)		const

Get the point with ID id in world coordinates.

check if the ID exists. If it doesn't exist, then return 0,0,0

Definition at line 244 of file mitkPointSet.cpp.

References mitk::BaseData::GetGeometry(), mitk::BaseGeometry::IndexToWorld(), and m_PointSetSeries.

Referenced by mitk::PlaneFit::CalculateCentroid(), mitk::AnisotropicRegistrationCommon::ComputeTargetRegistrationError(), mitk::NavigationDataToPointSetFilter::GenerateDataMode3DMean(), QmitkPointListView::OnListViewSelectionChanged(), mitk::PlaneFit::ProcessPointSet(), QmitkFiducialRegistrationWidget::Register(), mitk::Mesh::SearchLine(), SetSelectInfo(), SwapPointContents(), and SwapPointPosition().

◆ GetPointIfExists()

bool mitk::PointSet::GetPointIfExists	(	PointIdentifier	id,
		PointType *	point,
		int	t = `0`
	)		const

Get the point with ID id in world coordinates.

If a point exists for the ID id, the point is returned in the parameter point and the method returns true. If the ID does not exist, the method returns false

Definition at line 266 of file mitkPointSet.cpp.

References mitk::BaseData::GetGeometry(), mitk::BaseGeometry::IndexToWorld(), and m_PointSetSeries.

◆ GetPointSet()

mitk::PointSet::DataType::Pointer mitk::PointSet::GetPointSet ( int t = 0 ) const

virtual

returns the pointset

Definition at line 125 of file mitkPointSet.cpp.

References m_PointSetSeries.

Referenced by mitk::EnhancedPointSetVtkMapper3D::ApplyColorAndOpacityProperties(), mitk::PointSetDataInteractor::GetPointIndexByPosition(), QmitkPointListView::OnListViewSelectionChanged(), PointSet(), mitk::PointLocator::SetPoints(), mitk::PointSetDataInteractor::UnselectAll(), mitk::EnhancedPointSetVtkMapper3D::UpdateVtkObjects(), mitk::PointSetWriterService::Write(), and mitk::PointSetWriter::WriteXML().

◆ GetPointSetSeriesSize()

unsigned int mitk::PointSet::GetPointSetSeriesSize ( ) const

virtual

Definition at line 108 of file mitkPointSet.cpp.

References m_PointSetSeries.

Referenced by mitk::PlaneFit::GenerateData(), mitk::PlaneFit::GenerateOutputInformation(), and mitk::PlaneFit::SetInput().

◆ GetSelectInfo()

bool mitk::PointSet::GetSelectInfo	(	int	position,
		int	t = `0`
	)		const

virtual

to get the state selected/unselected of the point on the position

Definition at line 470 of file mitkPointSet.cpp.

References IndexExists(), m_PointSetSeries, mitk::PTUNDEFINED, and mitk::PointSet::PointDataType::selected.

◆ GetSize()

int mitk::PointSet::GetSize ( unsigned int t = 0 ) const

virtual

returns the current size of the point-list

Definition at line 113 of file mitkPointSet.cpp.

References m_PointSetSeries.

Referenced by mitk::PlaneFit::CalculateCentroid(), mitk::AnisotropicRegistrationCommon::ComputeTargetRegistrationError(), mitk::Equal(), mitk::PlaneFit::GenerateData(), mitk::NavigationDataToPointSetFilter::GenerateDataMode3D(), IsEmptyTimeStep(), mitkPlaneFitTest(), QmitkPointListWidget::MoveSelectedPointDown(), QmitkPointListWidget::MoveSelectedPointUp(), mitk::PlaneFit::ProcessPointSet(), QmitkFiducialRegistrationWidget::Register(), QmitkPointListWidget::RemoveSelectedPoint(), and mitk::PointLocator::SetPoints().

◆ GetSpecificationTypeInfo()

mitk::PointSpecificationType mitk::PointSet::GetSpecificationTypeInfo	(	int	position,
		int	t
	)		const

virtual

to get the type of the point at the position and the moment

Definition at line 508 of file mitkPointSet.cpp.

References IndexExists(), m_PointSetSeries, mitk::PointSet::PointDataType::pointSpec, and mitk::PTUNDEFINED.

Referenced by mitk::PointSetWriterService::Write(), and mitk::PointSetWriter::WriteXML().

◆ GetStaticNameOfClass()

static const char* mitk::PointSet::GetStaticNameOfClass ( )

inlinestatic

Definition at line 78 of file mitkPointSet.h.

Referenced by mitk::BaseDataCompare::RegisterCoreEquals().

◆ IndexExists()

bool mitk::PointSet::IndexExists	(	int	position,
		int	t = `0`
	)		const

virtual

returns true if a point exists at this position

Definition at line 458 of file mitkPointSet.cpp.

References m_PointSetSeries.

Referenced by GetSelectInfo(), GetSpecificationTypeInfo(), SetSelectInfo(), and SwapPointPosition().

◆ InitializeEmpty()

void mitk::PointSet::InitializeEmpty ( )

overrideprotectedvirtual

Pure virtual; Must be used in subclasses to get a data object to a valid state. Should at least create one empty object and call Superclass::InitializeTimeGeometry() to ensure an existing valid geometry.

Reimplemented from mitk::BaseData.

Definition at line 57 of file mitkPointSet.cpp.

References mitk::BaseData::InitializeTimeGeometry(), m_CalculateBoundingBox, m_EmptyPointsContainer, mitk::BaseData::m_Initialized, and m_PointSetSeries.

Referenced by PointSet().

◆ InsertPoint() [1/3]

void mitk::PointSet::InsertPoint	(	PointIdentifier	id,
		PointType	point,
		int	t = `0`
	)

Set the given point in world coordinate system into the itkPointSet.

Definition at line 321 of file mitkPointSet.cpp.

References mitk::PTUNDEFINED.

Referenced by mitk::NavigationDataToPointSetFilter::GenerateDataMode3D(), mitk::NavigationDataToPointSetFilter::GenerateDataMode3DMean(), QmitkFiducialRegistrationWidget::Register(), and SwapPointPosition().

◆ InsertPoint() [2/3]

void mitk::PointSet::InsertPoint	(	PointIdentifier	id,
		PointType	point,
		PointSpecificationType	spec,
		int	t
	)

Set the given point in world coordinate system with given PointSpecificationType.

Definition at line 326 of file mitkPointSet.cpp.

References mitk::BaseData::GetGeometry(), mitk::PointSet::PointDataType::id, m_CalculateBoundingBox, m_PointSetSeries, MITK_INFO, mitk::PointSet::PointDataType::pointSpec, mitk::PointSet::PointDataType::selected, and mitk::BaseGeometry::WorldToIndex().

◆ InsertPoint() [3/3]

mitk::PointSet::PointIdentifier mitk::PointSet::InsertPoint	(	PointType	point,
		int	t = `0`
	)

Insert the given point in world coordinate system with incremented max id at time step t.

Definition at line 351 of file mitkPointSet.cpp.

References End(), Expand(), mitk::BaseData::GetGeometry(), mitk::PointSet::PointDataType::id, m_CalculateBoundingBox, m_PointSetSeries, mitk::PointSet::PointDataType::pointSpec, mitk::PTUNDEFINED, mitk::PointSet::PointDataType::selected, and mitk::BaseGeometry::WorldToIndex().

◆ InternalClone()

virtual itk::LightObject::Pointer mitk::PointSet::InternalClone ( ) const

inlineoverrideprotectedvirtual

Definition at line 269 of file mitkPointSet.h.

◆ IsEmptyTimeStep()

bool mitk::PointSet::IsEmptyTimeStep ( unsigned int t ) const

overridevirtual

Check whether object contains data (at a specified time), e.g., a set of points may be empty.

Warning: Returns IsInitialized()==false by default for compatibility reasons. Override in sub-classes that support distinction between empty/non-empty state.

Reimplemented from mitk::BaseData.

Definition at line 72 of file mitkPointSet.cpp.

References GetSize(), and mitk::BaseData::IsInitialized().

◆ New()

static Pointer mitk::PointSet::New ( )

static

Examples:: Step5.cpp, and Step6.cpp.

Referenced by QmitkRenderWindowWidget::ActivateCrosshair(), mitk::FastMarchingTool3D::Activated(), mitk::FastMarchingTool::Activated(), mitk::AdaptiveRegionGrowingTool::AdaptiveRegionGrowingTool(), mitk::FastMarchingTool3D::ClearSeeds(), mitk::FastMarchingTool::ClearSeeds(), mitk::NavigationToolReader::ConvertDataNodeToNavigationTool(), mitk::NavigationDataSet::ConvertNavigationDataToPointSet(), mitk::NavigationToolReader::ConvertStringToPointSet(), mitk::PlaneProposer::CreatePlaneInfo(), mitk::NavigationToolStorageTestHelper::CreateTestData_StorageWithOneTool(), mitk::SinglePointDataInteractor::DataNodeChanged(), mitk::PointSetDataInteractor::DataNodeChanged(), mitk::ExampleInteractor::ExampleInteractor(), mitk::SurfaceToPointSetFilter::GenerateData(), mitk::PointSetReader::GenerateData(), QmitkIGTPlayerWidget::GetNavigationDatasPointSet(), Step6::Initialize(), mitk::NeedleProjectionFilter::InitializeOriginalPoints(), QmitkToFPointSetWidget::InitializeWidget(), main(), mitk::PointSetSource::MakeOutput(), QmitkToFPointSetWidget::MeasurementPointSetChanged(), mitkPlaneFitTest(), mitkPointSetWriterTest(), mitkPropertySerializationTest(), mitkTimeGeometryTest(), mitk::NavigationDataReferenceTransformFilter::NavigationDataReferenceTransformFilter(), mitk::NavigationDataToPointSetFilter::NavigationDataToPointSetFilter(), QmitkNavigationToolCreationWidget::OnEditToolTipFinished(), mitk::PickingTool::PickingTool(), QmitkToFPointSetWidget::PointSetChanged(), mitk::PointSetDifferenceStatisticsCalculator::PointSetDifferenceStatisticsCalculator(), mitk::PointSetStatisticsCalculator::PointSetStatisticsCalculator(), mitk::PointSetWriter::PointSetWriter(), mitk::PointSetReaderService::Read(), QmitkFiducialRegistrationWidget::Register(), mitk::PointSetWriter::ResizeInputs(), QmitkFiducialRegistrationWidget::setDataStorage(), mitk::NavigationDataEvaluationFilter::VectorToPointSet(), and mitk::ToFTestingCommon::VtkPolyDataToMitkPointSet().

◆ OnPointSetChange()

virtual void mitk::PointSet::OnPointSetChange ( )

inlinevirtual

Definition at line 266 of file mitkPointSet.h.

Referenced by ExecuteOperation().

◆ PrintSelf()

void mitk::PointSet::PrintSelf	(	std::ostream &	os,
		itk::Indent	indent
	)		const

overrideprotected

print content of the object to os

Definition at line 823 of file mitkPointSet.cpp.

References m_PointSetSeries, and mitk::BaseData::PrintSelf().

◆ RemovePointAtEnd()

mitk::PointSet::PointsIterator mitk::PointSet::RemovePointAtEnd ( int t = 0 )

Remove max id point at timestep t and return iterator to precedent point.

Definition at line 400 of file mitkPointSet.cpp.

References m_EmptyPointsContainer, and m_PointSetSeries.

◆ RemovePointIfExists()

bool mitk::PointSet::RemovePointIfExists	(	PointIdentifier	id,
		int	t = `0`
	)

Remove point with given id at timestep t, if existent.

Definition at line 380 of file mitkPointSet.cpp.

References m_PointSetSeries.

◆ RequestedRegionIsOutsideOfTheBufferedRegion()

bool mitk::PointSet::RequestedRegionIsOutsideOfTheBufferedRegion ( )

overridevirtual

Determine whether the RequestedRegion is outside of the BufferedRegion.

This method returns true if the RequestedRegion is outside the BufferedRegion (true if at least one pixel is outside). This is used by the pipeline mechanism to determine whether a filter needs to re-execute in order to satisfy the current request. If the current RequestedRegion is already inside the BufferedRegion from the previous execution (and the current filter is up to date), then a given filter does not need to re-execute

Implements mitk::BaseData.

Definition at line 809 of file mitkPointSet.cpp.

◆ SearchPoint()

int mitk::PointSet::SearchPoint	(	Point3D	point,
		ScalarType	distance,
		int	t = `0`
	)		const

searches a point in the list == point +/- distance

Parameters

point	is in world coordinates.
distance	is in mm. returns -1 if no point is found or the position in the list of the first match

Definition at line 183 of file mitkPointSet.cpp.

References Begin(), mitk::BaseData::GetGeometry(), m_PointSetSeries, and mitk::BaseGeometry::WorldToIndex().

Referenced by mitk::Mesh::EvaluatePosition().

◆ SearchSelectedPoint()

int mitk::PointSet::SearchSelectedPoint ( int t = 0 ) const

virtual

searches a selected point and returns the id of that point. If no point is found, then -1 is returned

Definition at line 542 of file mitkPointSet.cpp.

References m_PointSetSeries.

Referenced by mitk::Mesh::ExecuteOperation(), and QmitkPointListView::OnPointSetSelectionChanged().

◆ SetPoint() [1/2]

void mitk::PointSet::SetPoint	(	PointIdentifier	id,
		PointType	point,
		int	t = `0`
	)

Set the given point in world coordinate system into the itkPointSet.

Definition at line 284 of file mitkPointSet.cpp.

References Expand(), mitk::BaseData::GetGeometry(), mitk::PointSet::PointDataType::id, m_CalculateBoundingBox, m_PointSetSeries, mitk::PointSet::PointDataType::pointSpec, mitk::PTUNDEFINED, mitk::PointSet::PointDataType::selected, and mitk::BaseGeometry::WorldToIndex().

Referenced by mitk::NavigationDataToPointSetFilter::GenerateDataMode3DMean(), and mitk::NavigationDataToPointSetFilter::GenerateDataMode4D().

◆ SetPoint() [2/2]

void mitk::PointSet::SetPoint	(	PointIdentifier	id,
		PointType	point,
		PointSpecificationType	spec,
		int	t = `0`
	)

Set the given point in world coordinate system with the given PointSpecificationType.

Definition at line 303 of file mitkPointSet.cpp.

References Expand(), mitk::BaseData::GetGeometry(), mitk::PointSet::PointDataType::id, m_CalculateBoundingBox, m_PointSetSeries, mitk::PointSet::PointDataType::pointSpec, mitk::PointSet::PointDataType::selected, and mitk::BaseGeometry::WorldToIndex().

◆ SetRequestedRegion()

void mitk::PointSet::SetRequestedRegion ( const itk::DataObject * data )

overridevirtual

Set the requested region from this data object to match the requested region of the data object passed in as a parameter.

This method is implemented in the concrete subclasses of BaseData.

Implements mitk::BaseData.

Definition at line 819 of file mitkPointSet.cpp.

◆ SetRequestedRegionToLargestPossibleRegion()

void mitk::PointSet::SetRequestedRegionToLargestPossibleRegion ( )

overridevirtual

Set the RequestedRegion to the LargestPossibleRegion.

This forces a filter to produce all of the output in one execution (i.e. not streaming) on the next call to Update().

Implements mitk::BaseData.

Definition at line 805 of file mitkPointSet.cpp.

◆ SetSelectInfo()

void mitk::PointSet::SetSelectInfo	(	int	position,
		bool	selected,
		int	t = `0`
	)

virtual

Definition at line 484 of file mitkPointSet.cpp.

References ExecuteOperation(), GetPoint(), mitk::BaseData::GetTimeGeometry(), IndexExists(), mitk::OpDESELECTPOINT, mitk::OpSELECTPOINT, and mitk::TimeGeometry::TimeStepToTimePoint().

Referenced by QmitkPointListView::OnListViewSelectionChanged().

◆ SwapPointContents()

bool mitk::PointSet::SwapPointContents	(	PointIdentifier	id1,
		PointIdentifier	id2,
		int	t = `0`
	)

protected

swaps point coordinates and point data of the points with identifiers id1 and id2

Definition at line 854 of file mitkPointSet.cpp.

References GetPoint(), and m_PointSetSeries.

Referenced by ExecuteOperation().

◆ SwapPointPosition()

bool mitk::PointSet::SwapPointPosition	(	PointIdentifier	id,
		bool	moveUpwards,
		int	t = `0`
	)

Swap a point at the given position (id) with the upper point (moveUpwards=true) or with the lower point (moveUpwards=false). If upper or lower index does not exist false is returned, if swap was successful true.

Definition at line 428 of file mitkPointSet.cpp.

References GetPoint(), IndexExists(), and InsertPoint().

◆ UpdateOutputInformation()

void mitk::PointSet::UpdateOutputInformation ( )

override

Definition at line 748 of file mitkPointSet.cpp.

References mitk::TimeGeometry::CountTimeSteps(), mitk::BaseData::GetGeometry(), mitk::BaseData::GetSource(), mitk::BaseData::GetTimeGeometry(), m_CalculateBoundingBox, m_PointSetSeries, mitk::BaseGeometry::SetBounds(), and mitk::TimeGeometry::Update().

◆ VerifyRequestedRegion()

bool mitk::PointSet::VerifyRequestedRegion ( )

overridevirtual

Verify that the RequestedRegion is within the LargestPossibleRegion.

If the RequestedRegion is not within the LargestPossibleRegion, then the filter cannot possibly satisfy the request. This method returns true if the request can be satisfied (even if it will be necessary to process the entire LargestPossibleRegion) and returns false otherwise. This method is used by PropagateRequestedRegion(). PropagateRequestedRegion() throws a InvalidRequestedRegionError exception if the requested region is not within the LargestPossibleRegion.

Implements mitk::BaseData.

Definition at line 814 of file mitkPointSet.cpp.

Member Data Documentation

◆ m_CalculateBoundingBox

bool mitk::PointSet::m_CalculateBoundingBox

protected

flag to indicate the right time to call SetBounds

Definition at line 293 of file mitkPointSet.h.

Referenced by ExecuteOperation(), Expand(), InitializeEmpty(), InsertPoint(), SetPoint(), and UpdateOutputInformation().

◆ m_EmptyPointsContainer

DataType::PointsContainer::Pointer mitk::PointSet::m_EmptyPointsContainer

protected

Definition at line 288 of file mitkPointSet.h.

Referenced by Begin(), End(), GetMaxId(), InitializeEmpty(), and RemovePointAtEnd().

◆ m_PointSetSeries

PointSetSeries mitk::PointSet::m_PointSetSeries

protected

◆ MaxTopologicalDimension

const unsigned int mitk::PointSet::MaxTopologicalDimension

static

Definition at line 88 of file mitkPointSet.h.

◆ PointDimension

const unsigned int mitk::PointSet::PointDimension

static

Definition at line 87 of file mitkPointSet.h.

The documentation for this class was generated from the following files:

Classes

Public Types

Public Member Functions

Static Public Member Functions

Static Public Attributes

Protected Types

Protected Member Functions

Protected Attributes

Detailed Description

mitkPointSetDisplayOptions

Events

Member Typedef Documentation

◆ ConstPointer

◆ CoordinateType

◆ DataType

◆ InterpolationWeightType

◆ MeshTraits

◆ MeshType

◆ PointDataConstIterator

◆ PointDataContainer

◆ PointDataIterator

◆ Pointer

◆ PointIdentifier

◆ PointsConstIterator

◆ PointsContainer

◆ PointSetSeries

◆ PointsIterator

◆ PointType

◆ SelectedLinesIter

◆ SelectedLinesType

◆ Self

◆ Superclass

Constructor & Destructor Documentation

◆ PointSet() [1/2]

◆ PointSet() [2/2]

◆ ~PointSet()

Member Function Documentation

◆ Begin() [1/2]

◆ Begin() [2/2]

◆ ClearData()

◆ Clone()

◆ End() [1/2]

◆ End() [2/2]

◆ ExecuteOperation()

◆ Expand()

◆ GetClassHierarchy()

◆ GetClassName()

◆ GetMaxId()

◆ GetNumberOfSelected()

◆ GetPoint()

◆ GetPointIfExists()

◆ GetPointSet()

◆ GetPointSetSeriesSize()

◆ GetSelectInfo()

◆ GetSize()

◆ GetSpecificationTypeInfo()

◆ GetStaticNameOfClass()

◆ IndexExists()

◆ InitializeEmpty()

◆ InsertPoint() [1/3]

◆ InsertPoint() [2/3]

◆ InsertPoint() [3/3]

◆ InternalClone()

◆ IsEmptyTimeStep()

◆ New()

◆ OnPointSetChange()

◆ PrintSelf()

◆ RemovePointAtEnd()

◆ RemovePointIfExists()

◆ RequestedRegionIsOutsideOfTheBufferedRegion()

◆ SearchPoint()

◆ SearchSelectedPoint()

◆ SetPoint() [1/2]

◆ SetPoint() [2/2]

◆ SetRequestedRegion()

◆ SetRequestedRegionToLargestPossibleRegion()

◆ SetSelectInfo()

◆ SwapPointContents()

◆ SwapPointPosition()

◆ UpdateOutputInformation()