Superclass of all classes generating Images (instances of class Image) as output. More...

#include <mitkImageSource.h>

Inheritance diagram for mitk::ImageSource:

Collaboration diagram for mitk::ImageSource:

Classes
struct	ThreadStruct
	Internal structure used for passing image data into the threading library. More...

Public Types
typedef ImageSource	Self

typedef BaseDataSource	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef mitk::Image	OutputImageType
	Some convenient typedefs. More...

typedef OutputImageType	OutputType

typedef OutputImageType::Pointer	OutputImagePointer

typedef SlicedData::RegionType	OutputImageRegionType

Public Types inherited from mitk::BaseDataSource
typedef BaseDataSource	Self

typedef itk::ProcessObject	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef BaseData	OutputType

typedef itk::DataObject::DataObjectIdentifierType	DataObjectIdentifierType

Public Member Functions
virtual std::vector< std::string >	GetClassHierarchy () const override

virtual const char *	GetClassName () const

Pointer	Clone () const

OutputType *	GetOutput ()
	Get the output data of this image source object. More...

const OutputType *	GetOutput () const

OutputType *	GetOutput (DataObjectPointerArraySizeType idx)

const OutputType *	GetOutput (DataObjectPointerArraySizeType idx) const

virtual itk::DataObject::Pointer	MakeOutput (DataObjectPointerArraySizeType idx) override
	Make a DataObject of the correct type to used as the specified output. More...

virtual itk::DataObject::Pointer	MakeOutput (const DataObjectIdentifierType &name) override

virtual vtkImageData *	GetVtkImageData ()

virtual const vtkImageData *	GetVtkImageData () const

Public Member Functions inherited from mitk::BaseDataSource
OutputType *	GetOutput ()

const OutputType *	GetOutput () const

OutputType *	GetOutput (DataObjectPointerArraySizeType idx)

const OutputType *	GetOutput (DataObjectPointerArraySizeType idx) const

virtual void	GraftOutput (OutputType *output)
	Graft the specified BaseData onto this BaseDataSource's output. More...

virtual void	GraftOutput (const DataObjectIdentifierType &key, OutputType *output)

virtual void	GraftNthOutput (unsigned int idx, OutputType *output)
	Graft the specified base data object onto this BaseDataSource's idx'th output. More...

bool	Updating () const
	Access itk::ProcessObject::m_Updating. More...

Static Public Member Functions
static const char *	GetStaticNameOfClass ()

static Pointer	New ()
	Method for creation through the object factory. More...

Static Public Member Functions inherited from mitk::BaseDataSource
static const char *	GetStaticNameOfClass ()

Protected Member Functions
	ImageSource ()

virtual	~ImageSource ()

virtual void	GenerateData () override
	A version of GenerateData() specific for image processing filters. More...

virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, itk::ThreadIdType threadId)
	If an imaging filter can be implemented as a multithreaded algorithm, the filter will provide an implementation of ThreadedGenerateData(). More...

virtual void	PrepareOutputs () override
	This method is intentionally left blank. More...

virtual void	AllocateOutputs ()
	The GenerateData method normally allocates the buffers for all of the outputs of a filter. More...

virtual void	BeforeThreadedGenerateData ()
	If an imaging filter needs to perform processing after the buffer has been allocated but before threads are spawned, the filter can can provide an implementation for BeforeThreadedGenerateData(). More...

virtual void	AfterThreadedGenerateData ()
	If an imaging filter needs to perform processing after all processing threads have completed, the filter can can provide an implementation for AfterThreadedGenerateData(). More...

virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int num, OutputImageRegionType &splitRegion)
	Split the output's RequestedRegion into "num" pieces, returning region "i" as "splitRegion". More...

Protected Member Functions inherited from mitk::BaseDataSource
	BaseDataSource ()

virtual	~BaseDataSource ()

Static Protected Member Functions
static ITK_THREAD_RETURN_TYPE	ThreaderCallback (void *arg)
	Static function used as a "callback" by the MultiThreader. More...

Static Protected Member Functions inherited from mitk::BaseDataSource
static Pointer	New ()

Detailed Description

Superclass of all classes generating Images (instances of class Image) as output.

In itk and vtk the generated result of a ProcessObject is only guaranteed to be up-to-date, when Update() of the ProcessObject or the generated DataObject is called immediately before access of the data stored in the DataObject. This is also true for subclasses of mitk::BaseProcess and thus for mitk::ImageSource. But there are also three access methods provided that guarantee an up-to-date result (by first calling Update and then returning the result of GetOutput()): GetData(), GetPic() and GetVtkImageData().

Definition at line 40 of file mitkImageSource.h.

Member Typedef Documentation

typedef itk::SmartPointer<const Self> mitk::ImageSource::ConstPointer

Definition at line 43 of file mitkImageSource.h.

typedef OutputImageType::Pointer mitk::ImageSource::OutputImagePointer

Definition at line 51 of file mitkImageSource.h.

typedef SlicedData::RegionType mitk::ImageSource::OutputImageRegionType

Definition at line 52 of file mitkImageSource.h.

typedef mitk::Image mitk::ImageSource::OutputImageType

Some convenient typedefs.

Definition at line 49 of file mitkImageSource.h.

typedef OutputImageType mitk::ImageSource::OutputType

Definition at line 50 of file mitkImageSource.h.

typedef itk::SmartPointer<Self> mitk::ImageSource::Pointer

Definition at line 43 of file mitkImageSource.h.

typedef ImageSource mitk::ImageSource::Self

Definition at line 43 of file mitkImageSource.h.

typedef BaseDataSource mitk::ImageSource::Superclass

Definition at line 43 of file mitkImageSource.h.

Constructor & Destructor Documentation

ImageSource::ImageSource ( )

protected

Definition at line 22 of file mitkImageSource.cpp.

References MakeOutput().

virtual mitk::ImageSource::~ImageSource ( )

inlineprotectedvirtual

Definition at line 137 of file mitkImageSource.h.

Member Function Documentation

virtual void mitk::ImageSource::AfterThreadedGenerateData ( )

inlineprotectedvirtual

If an imaging filter needs to perform processing after all processing threads have completed, the filter can can provide an implementation for AfterThreadedGenerateData().

The execution flow in the default GenerateData() method will be: 1) Allocate the output buffer 2) Call BeforeThreadedGenerateData() 3) Spawn threads, calling ThreadedGenerateData() in each thread. 4) Call AfterThreadedGenerateData() Note that this flow of control is only available if a filter provides a ThreadedGenerateData() method and NOT a GenerateData() method.

Reimplemented in itk::KspaceImageFilter< TPixelType >.

Definition at line 225 of file mitkImageSource.h.

void ImageSource::AllocateOutputs ( )

protectedvirtual

The GenerateData method normally allocates the buffers for all of the outputs of a filter.

Some filters may want to override this default behavior. For example, a filter may have multiple outputs with varying resolution. Or a filter may want to process data in place by grafting its input to its output.

Definition at line 105 of file mitkImageSource.cpp.

virtual void mitk::ImageSource::BeforeThreadedGenerateData ( )

inlineprotectedvirtual

If an imaging filter needs to perform processing after the buffer has been allocated but before threads are spawned, the filter can can provide an implementation for BeforeThreadedGenerateData().

The execution flow in the default GenerateData() method will be: 1) Allocate the output buffer 2) Call BeforeThreadedGenerateData() 3) Spawn threads, calling ThreadedGenerateData() in each thread. 4) Call AfterThreadedGenerateData() Note that this flow of control is only available if a filter provides a ThreadedGenerateData() method and NOT a GenerateData() method.

Reimplemented in itk::KspaceImageFilter< TPixelType >.

Definition at line 212 of file mitkImageSource.h.

Pointer mitk::ImageSource::Clone ( ) const

void ImageSource::GenerateData ( )

overrideprotectedvirtual

A version of GenerateData() specific for image processing filters.

This implementation will split the processing across multiple threads. The buffer is allocated by this method. Then the BeforeThreadedGenerateData() method is called (if provided). Then, a series of threads are spawned each calling ThreadedGenerateData(). After all the threads have completed processing, the AfterThreadedGenerateData() method is called (if provided). If an image processing filter cannot be threaded, the filter should provide an implementation of GenerateData(). That implementation is responsible for allocating the output buffer. If a filter an be threaded, it should NOT provide a GenerateData() method but should provide a ThreadedGenerateData() instead.

See also: ThreadedGenerateData()

Reimplemented in mitk::USDevice, mitk::USCombinedModality, mitk::ToFImageGrabber, mitk::ExtractSliceFilter, mitk::CreateDistanceImageFromSurfaceFilter, mitk::GeometryClipImageFilter, mitk::HeightFieldSurfaceClipImageFilter, mitk::ToFCompositeFilter, mitk::ToFImageRecorderFilter, mitk::OverwriteSliceImageFilter, mitk::AutoCropImageFilter, mitk::ExtractImageFilter, mitk::CompareImageDataFilter, mitk::ExtractDirectedPlaneImageFilter, mitk::OverwriteDirectedPlaneImageFilter, mitk::MaskImageFilter, mitk::BoundingShapeCropper, mitk::ExtractDirectedPlaneImageFilterNew, mitk::DiffusionImageCreationFilter, mitk::OpenCVToMitkImageFilter, mitk::ITKImageImport< TInputImage >, mitk::DemonsRegistration, mitk::SymmetricForcesDemonsRegistration, mitk::CorrectorAlgorithm, mitk::BoundingObjectCutter, mitk::RawImageFileReader, mitk::MultiComponentImageDataComparisonFilter, mitk::OtsuSegmentationFilter, mitk::SurfaceStampImageFilter, mitk::DWIHeadMotionCorrectionFilter, mitk::SurfaceToImageFilter, mitk::DiffusionImageTransformedCreationFilter< TTransformType >, itk::TractsToVectorImageFilter< PixelType >, mitk::ToFImageDownsamplingFilter, mitk::MRNormTwoRegionsBasedFilter, mitk::RGBToRGBACastImageFilter, mitk::MaskAndCutRoiImageFilter, mitk::BSplineRegistration, mitk::HistogramMatching, mitk::PyramidalRegistrationMethod, mitk::MRNormLinearStatisticBasedFilter, mitk::BilateralFilter, mitk::ContourModelSetToImageFilter, mitk::PadImageFilter, mitk::NrrdTbssImageReader, mitk::NrrdTbssRoiImageReader, mitk::ImageRegistrationMethod, mitk::Convert2Dto3DImageFilter, mitk::VtiFileReader, mitk::VtkImageReader, mitk::ImageTimeSelector, mitk::ImageSliceSelector, mitk::ImageChannelSelector, mitk::ItkImageFileReader, mitk::USImageLoggingFilter, and mitk::BoundingObjectToSegmentationFilter.

Definition at line 120 of file mitkImageSource.cpp.

References mitk::ImageSource::ThreadStruct::Filter.

virtual std::vector<std::string> mitk::ImageSource::GetClassHierarchy ( ) const

inlineoverridevirtual

Reimplemented from mitk::BaseDataSource.

Reimplemented in mitk::CompareImageDataFilter, mitk::ExtractSliceFilter, mitk::SurfaceToImageFilter, mitk::ITKImageImport< TInputImage >, mitk::Convert2Dto3DImageFilter, mitk::RGBToRGBACastImageFilter, mitk::SubImageSelector, mitk::MultiComponentImageDataComparisonFilter, mitk::ImageChannelSelector, mitk::ImageSliceSelector, mitk::ImageTimeSelector, and mitk::ImageToImageFilter.

Definition at line 43 of file mitkImageSource.h.

virtual const char* mitk::ImageSource::GetClassName ( ) const

virtual

Reimplemented from mitk::BaseDataSource.

Reimplemented in mitk::CompareImageDataFilter, mitk::ExtractSliceFilter, itk::KspaceImageFilter< TPixelType >, mitk::SurfaceToImageFilter, itk::TractsToVectorImageFilter< PixelType >, mitk::ITKImageImport< TInputImage >, mitk::Convert2Dto3DImageFilter, mitk::RGBToRGBACastImageFilter, mitk::SubImageSelector, mitk::MultiComponentImageDataComparisonFilter, mitk::ImageChannelSelector, mitk::ImageSliceSelector, mitk::ImageTimeSelector, and mitk::ImageToImageFilter.

OutputType* mitk::ImageSource::GetOutput ( DataObjectPointerArraySizeType idx )

const OutputType* mitk::ImageSource::GetOutput ( DataObjectPointerArraySizeType idx ) const

OutputType* mitk::ImageSource::GetOutput ( )

Get the output data of this image source object.

The output of this function is not valid until an appropriate Update() method has been called, either explicitly or implicitly. Both the filter itself and the data object have Update() methods, and both methods update the data. Here are three ways to use GetOutput() and make sure the data is valid. In these examples, image is a pointer to some Image object, and the particular ProcessObjects involved are filters. The same examples apply to non-image (e.g. Mesh) data as well.

anotherFilter->SetInput( someFilter->GetOutput() );

anotherFilter->Update();

In this situation, someFilter and anotherFilter are said to constitute a pipeline.

image = someFilter->GetOutput();

image->Update();

someFilter->Update();

image = someFilter->GetOutput();

(In the above example, the two lines of code can be in either order.)

Note that Update() is not called automatically except within a pipeline as in the first example. When streaming (using a StreamingImageFilter) is activated, it may be more efficient to use a pipeline than to call Update() once for each filter in turn.

For an image, the data generated is for the requested Region, which can be set using ImageBase::SetRequestedRegion(). By default, the largest possible region is requested.

For Filters which have multiple outputs of different types, the GetOutput() method assumes the output is of OutputImageType. For the GetOutput(DataObjectPointerArraySizeType) method, a dynamic_cast is performed incase the filter has outputs of different types or image types. Derived classes should have named get methods for these outputs.

const OutputType* mitk::ImageSource::GetOutput ( ) const

static const char* mitk::ImageSource::GetStaticNameOfClass ( )

inlinestatic

Definition at line 43 of file mitkImageSource.h.

vtkImageData * ImageSource::GetVtkImageData ( )

virtual

Definition at line 192 of file mitkImageSource.cpp.

References Update().

const vtkImageData * ImageSource::GetVtkImageData ( ) const

virtual

Definition at line 198 of file mitkImageSource.cpp.

itk::DataObject::Pointer ImageSource::MakeOutput ( DataObjectPointerArraySizeType idx )

overridevirtual

Make a DataObject of the correct type to used as the specified output.

Every ProcessObject subclass must be able to create a DataObject that can be used as a specified output. This method is automatically called when DataObject::DisconnectPipeline() is called. DataObject::DisconnectPipeline, disconnects a data object from being an output of its current source. When the data object is disconnected, the ProcessObject needs to construct a replacement output data object so that the ProcessObject is in a valid state. So DataObject::DisconnectPipeline eventually calls ProcessObject::MakeOutput. Note that MakeOutput always returns a SmartPointer to a DataObject. If a subclass of ImageSource has multiple outputs of different types, then that class must provide an implementation of MakeOutput().

Implements mitk::BaseDataSource.

Reimplemented in mitk::TbssImageSource, mitk::TbssRoiImageSource, mitk::LabelSetImageSource, mitk::ContourModelSetToImageFilter, mitk::QBallImageSource, mitk::TensorImageSource, and mitk::QBallImageSource.

Definition at line 31 of file mitkImageSource.cpp.

References mitk::Image::New().

Referenced by ImageSource(), mitk::ToFImageGrabber::ToFImageGrabber(), and mitk::USTelemedDevice::USTelemedDevice().

itk::DataObject::Pointer ImageSource::MakeOutput ( const DataObjectIdentifierType & name )

overridevirtual

This is a default implementation to make sure we have something. Once all the subclasses of ProcessObject provide an appopriate MakeOutput(), then ProcessObject::MakeOutput() can be made pure virtual.

Implements mitk::BaseDataSource.

Reimplemented in mitk::TbssImageSource, mitk::TbssRoiImageSource, mitk::ContourModelSetToImageFilter, mitk::QBallImageSource, mitk::TensorImageSource, and mitk::LabelSetImageSource.

Definition at line 36 of file mitkImageSource.cpp.

References mitk::Image::New().

static Pointer mitk::ImageSource::New ( )

static

Method for creation through the object factory.

Referenced by mitk::RegistrationWrapper::ApplyTransformationToImage(), mitk::DiffusionImageTransformedCreationFilter< TTransformType >::GenerateData(), mitk::USTelemedActivator::Load(), QmitkUSNewVideoDeviceWidget::OnClickedDone(), and mitk::USDevicePersistence::StringToUSVideoDevice().

void ImageSource::PrepareOutputs ( )

overrideprotectedvirtual

This method is intentionally left blank.

ImageSource's need not Initialize their containers. The Image::Allocate() method (called from GenerateData()) will resize the container if more memory is needed. Otherwise, the memory can be reused.

Definition at line 187 of file mitkImageSource.cpp.

unsigned int ImageSource::SplitRequestedRegion	(	unsigned int	i,
		unsigned int	num,
		OutputImageRegionType &	splitRegion
	)

protectedvirtual

Split the output's RequestedRegion into "num" pieces, returning region "i" as "splitRegion".

This method is called "num" times. The regions must not overlap. The method returns the number of pieces that the routine is capable of splitting the output RequestedRegion, i.e. return value is less than or equal to "num".

Definition at line 47 of file mitkImageSource.cpp.

References mitk::Image::GetDimension(), and mitk::SlicedData::GetRequestedRegion().

void ImageSource::ThreadedGenerateData	(	const OutputImageRegionType &	outputRegionForThread,
		itk::ThreadIdType	threadId
	)

protectedvirtual

If an imaging filter can be implemented as a multithreaded algorithm, the filter will provide an implementation of ThreadedGenerateData().

This superclass will automatically split the output image into a number of pieces, spawn multiple threads, and call ThreadedGenerateData() in each thread. Prior to spawning threads, the BeforeThreadedGenerateData() method is called. After all the threads have completed, the AfterThreadedGenerateData() method is called. If an image processing filter cannot support threading, that filter should provide an implementation of the GenerateData() method instead of providing an implementation of ThreadedGenerateData(). If a filter provides a GenerateData() method as its implementation, then the filter is responsible for allocating the output data. If a filter provides a ThreadedGenerateData() method as its implementation, then the output memory will allocated automatically by this superclass. The ThreadedGenerateData() method should only produce the output specified by "outputThreadRegion" parameter. ThreadedGenerateData() cannot write to any other portion of the output image (as this is responsibility of a different thread).

See also: GenerateData(), SplitRequestedRegion()

Definition at line 149 of file mitkImageSource.cpp.

ITK_THREAD_RETURN_TYPE ImageSource::ThreaderCallback ( void * arg )

staticprotected

Static function used as a "callback" by the MultiThreader.

The threading library will call this routine for each thread, which will delegate the control to ThreadedGenerateData().

Definition at line 158 of file mitkImageSource.cpp.

References mitk::ImageSource::ThreadStruct::Filter.

The documentation for this class was generated from the following files:

Classes

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Static Protected Member Functions

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation