This class performes a demons registration between two images with the same modality.. More...

#include <mitkDemonsRegistration.h>

Inheritance diagram for mitk::DemonsRegistration:

Collaboration diagram for mitk::DemonsRegistration:

Public Member Functions
	mitkClassMacro (DemonsRegistration, RegistrationBase)

Pointer	Clone () const

void	SetNumberOfIterations (int iterations)
	Sets the number of iterations which will be performed during the registration process. More...

void	SetStandardDeviation (float deviation)
	Sets the standard deviation used by the demons registration. More...

void	SetSaveDeformationField (bool saveField)
	Sets whether the resulting deformation field should be saved or not. More...

void	SetDeformationFieldFileName (const char *fieldName)
	Sets the filename for the resulting deformation field. More...

void	SetSaveResult (bool saveResult)
	Sets whether the result should be saved or not. More...

void	SetResultFileName (const char *resultName)
	Sets the filename for the resulting deformed image. More...

itk::Image< itk::Vector< float, 3 >, 3 >::Pointer	GetDeformationField ()
	Returns the deformation field, which results by the registration. More...

virtual void	GenerateData () override
	Starts the demons registration. More...

Public Member Functions inherited from mitk::RegistrationBase
	mitkClassMacro (RegistrationBase, ImageToImageFilter)

Pointer	Clone () const

virtual void	SetReferenceImage (Image::Pointer fixedImage)
	Sets the reference image (fixed image) for the registration. More...

Public Member Functions inherited from mitk::ImageToImageFilter
virtual std::vector< std::string >	GetClassHierarchy () const override

virtual const char *	GetClassName () const

Pointer	Clone () const

virtual void	SetInput (const InputImageType *image)

virtual void	SetInput (unsigned int, const InputImageType *image)

InputImageType *	GetInput (void)

InputImageType *	GetInput (unsigned int idx)

const InputImageType *	GetInput (void) const

const InputImageType *	GetInput (unsigned int idx) const

Public Member Functions inherited from mitk::ImageSource
Pointer	Clone () const

OutputType *	GetOutput ()
	Get the output data of this image source object. More...

const OutputType *	GetOutput () const

OutputType *	GetOutput (DataObjectPointerArraySizeType idx)

const OutputType *	GetOutput (DataObjectPointerArraySizeType idx) const

virtual itk::DataObject::Pointer	MakeOutput (DataObjectPointerArraySizeType idx) override
	Make a DataObject of the correct type to used as the specified output. More...

virtual itk::DataObject::Pointer	MakeOutput (const DataObjectIdentifierType &name) override

virtual vtkImageData *	GetVtkImageData ()

virtual const vtkImageData *	GetVtkImageData () const

Public Member Functions inherited from mitk::BaseDataSource
OutputType *	GetOutput ()

const OutputType *	GetOutput () const

OutputType *	GetOutput (DataObjectPointerArraySizeType idx)

const OutputType *	GetOutput (DataObjectPointerArraySizeType idx) const

virtual void	GraftOutput (OutputType *output)
	Graft the specified BaseData onto this BaseDataSource's output. More...

virtual void	GraftOutput (const DataObjectIdentifierType &key, OutputType *output)

virtual void	GraftNthOutput (unsigned int idx, OutputType *output)
	Graft the specified base data object onto this BaseDataSource's idx'th output. More...

bool	Updating () const
	Access itk::ProcessObject::m_Updating. More...

Static Public Member Functions
static Pointer	New ()
	Method for creation through the object factory. More...

Static Public Member Functions inherited from mitk::RegistrationBase
static Pointer	New ()
	Method for creation through the object factory. More...

Static Public Member Functions inherited from mitk::ImageToImageFilter
static const char *	GetStaticNameOfClass ()

static Pointer	New ()

Static Public Member Functions inherited from mitk::ImageSource
static const char *	GetStaticNameOfClass ()

static Pointer	New ()
	Method for creation through the object factory. More...

Static Public Member Functions inherited from mitk::BaseDataSource
static const char *	GetStaticNameOfClass ()

Protected Member Functions
	DemonsRegistration ()
	Default constructor. More...

virtual	~DemonsRegistration ()
	Default destructor. More...

template<typename TPixel , unsigned int VImageDimension>
void	GenerateData2 (const itk::Image< TPixel, VImageDimension > *itkImage1)
	Template class to perform the demons registration with any kind of image. Called by GenerateData(). More...

Protected Member Functions inherited from mitk::RegistrationBase
	RegistrationBase ()
	Default constructor. More...

virtual	~RegistrationBase ()
	Default destructor. More...

virtual void	AddStepsToDo (int steps)
	Adds steps to the progress bar, which will be done with AddStepsToDo(int steps) and SetRemainingProgress(int steps) More...

virtual void	SetProgress (const itk::EventObject &)
	Sets one step of progress to the progress bar. More...

virtual void	SetRemainingProgress (int steps)
	Sets the remaining progress to the progress bar. More...

Protected Member Functions inherited from mitk::ImageToImageFilter
	ImageToImageFilter ()

virtual	~ImageToImageFilter ()

virtual void	PrintSelf (std::ostream &os, itk::Indent indent) const override

virtual void	GenerateInputRequestedRegion () override

Protected Member Functions inherited from mitk::ImageSource
	ImageSource ()

virtual	~ImageSource ()

virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, itk::ThreadIdType threadId)
	If an imaging filter can be implemented as a multithreaded algorithm, the filter will provide an implementation of ThreadedGenerateData(). More...

virtual void	PrepareOutputs () override
	This method is intentionally left blank. More...

virtual void	AllocateOutputs ()
	The GenerateData method normally allocates the buffers for all of the outputs of a filter. More...

virtual void	BeforeThreadedGenerateData ()
	If an imaging filter needs to perform processing after the buffer has been allocated but before threads are spawned, the filter can can provide an implementation for BeforeThreadedGenerateData(). More...

virtual void	AfterThreadedGenerateData ()
	If an imaging filter needs to perform processing after all processing threads have completed, the filter can can provide an implementation for AfterThreadedGenerateData(). More...

virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int num, OutputImageRegionType &splitRegion)
	Split the output's RequestedRegion into "num" pieces, returning region "i" as "splitRegion". More...

Protected Member Functions inherited from mitk::BaseDataSource
	BaseDataSource ()

virtual	~BaseDataSource ()

Protected Attributes
int	m_Iterations

float	m_StandardDeviation

const char *	m_FieldName

const char *	m_ResultName

bool	m_SaveField

bool	m_SaveResult

itk::Image< class itk::Vector< float, 3 >, 3 >::Pointer	m_DeformationField

Protected Attributes inherited from mitk::RegistrationBase
Image::Pointer	m_ReferenceImage

Additional Inherited Members
Public Types inherited from mitk::ImageToImageFilter
typedef ImageToImageFilter	Self

typedef ImageSource	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef Superclass::OutputImageRegionType	OutputImageRegionType

typedef mitk::Image	InputImageType

typedef InputImageType::Pointer	InputImagePointer

typedef InputImageType::ConstPointer	InputImageConstPointer

typedef SlicedData::RegionType	InputImageRegionType

Public Types inherited from mitk::ImageSource
typedef ImageSource	Self

typedef BaseDataSource	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef mitk::Image	OutputImageType
	Some convenient typedefs. More...

typedef OutputImageType	OutputType

typedef OutputImageType::Pointer	OutputImagePointer

typedef SlicedData::RegionType	OutputImageRegionType

Public Types inherited from mitk::BaseDataSource
typedef BaseDataSource	Self

typedef itk::ProcessObject	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef BaseData	OutputType

typedef itk::DataObject::DataObjectIdentifierType	DataObjectIdentifierType

Static Protected Member Functions inherited from mitk::ImageSource
static ITK_THREAD_RETURN_TYPE	ThreaderCallback (void *arg)
	Static function used as a "callback" by the MultiThreader. More...

Static Protected Member Functions inherited from mitk::BaseDataSource
static Pointer	New ()

Detailed Description

This class performes a demons registration between two images with the same modality..

Author: Daniel Stein

Definition at line 36 of file mitkDemonsRegistration.h.

Constructor & Destructor Documentation

mitk::DemonsRegistration::DemonsRegistration ( )

protected

Default constructor.

Definition at line 27 of file mitkDemonsRegistration.cpp.

mitk::DemonsRegistration::~DemonsRegistration ( )

protectedvirtual

Default destructor.

Definition at line 38 of file mitkDemonsRegistration.cpp.

Member Function Documentation

Pointer mitk::DemonsRegistration::Clone ( ) const

virtual void mitk::DemonsRegistration::GenerateData ( )

inlineoverridevirtual

Starts the demons registration.

Reimplemented from mitk::ImageSource.

Definition at line 84 of file mitkDemonsRegistration.h.

References AccessByItk.

template<typename TPixel , unsigned int VImageDimension>

void mitk::DemonsRegistration::GenerateData2 ( const itk::Image< TPixel, VImageDimension > * itkImage1 )

protected

Template class to perform the demons registration with any kind of image. Called by GenerateData().

Definition at line 47 of file mitkDemonsRegistration.cpp.

References mitk::RegistrationBase::AddStepsToDo(), mitk::CastToItkImage(), mitk::CastToMitkImage(), mitk::ImageSource::GetOutput(), m_DeformationField, m_FieldName, m_Iterations, mitk::RegistrationBase::m_ReferenceImage, m_ResultName, m_SaveField, m_SaveResult, m_StandardDeviation, MITK_ERROR, mitk::New(), mitk::RegistrationBase::SetProgress(), and mitk::RegistrationBase::SetRemainingProgress().

itk::Image< itk::Vector< float, 3 >, 3 >::Pointer mitk::DemonsRegistration::GetDeformationField ( )

Returns the deformation field, which results by the registration.

Definition at line 45 of file mitkDemonsRegistration.cpp.

References m_DeformationField.

mitk::DemonsRegistration::mitkClassMacro	(	DemonsRegistration	,
		RegistrationBase
	)

static Pointer mitk::DemonsRegistration::New ( )

static

Method for creation through the object factory.

Referenced by QmitkDemonsRegistrationView::CalculateTransformation().

void mitk::DemonsRegistration::SetDeformationFieldFileName ( const char * fieldName )

Sets the filename for the resulting deformation field.

Definition at line 42 of file mitkDemonsRegistration.cpp.

References m_FieldName.

void mitk::DemonsRegistration::SetNumberOfIterations ( int iterations )

Sets the number of iterations which will be performed during the registration process.

Definition at line 39 of file mitkDemonsRegistration.cpp.

References m_Iterations.

void mitk::DemonsRegistration::SetResultFileName ( const char * resultName )

Sets the filename for the resulting deformed image.

Definition at line 44 of file mitkDemonsRegistration.cpp.

References m_ResultName.

void mitk::DemonsRegistration::SetSaveDeformationField ( bool saveField )

Sets whether the resulting deformation field should be saved or not.

Definition at line 41 of file mitkDemonsRegistration.cpp.

References m_SaveField.

void mitk::DemonsRegistration::SetSaveResult ( bool saveResult )

Sets whether the result should be saved or not.

Definition at line 43 of file mitkDemonsRegistration.cpp.

References m_SaveResult.

void mitk::DemonsRegistration::SetStandardDeviation ( float deviation )

Sets the standard deviation used by the demons registration.

Definition at line 40 of file mitkDemonsRegistration.cpp.

References m_StandardDeviation.

Member Data Documentation

itk::Image<class itk::Vector<float, 3>, 3>::Pointer mitk::DemonsRegistration::m_DeformationField

protected

Definition at line 115 of file mitkDemonsRegistration.h.

Referenced by GenerateData2(), and GetDeformationField().

const char* mitk::DemonsRegistration::m_FieldName

protected

Definition at line 111 of file mitkDemonsRegistration.h.

Referenced by GenerateData2(), and SetDeformationFieldFileName().

int mitk::DemonsRegistration::m_Iterations

protected

Definition at line 109 of file mitkDemonsRegistration.h.

Referenced by GenerateData2(), and SetNumberOfIterations().

const char* mitk::DemonsRegistration::m_ResultName

protected

Definition at line 112 of file mitkDemonsRegistration.h.

Referenced by GenerateData2(), and SetResultFileName().

bool mitk::DemonsRegistration::m_SaveField

protected

Definition at line 113 of file mitkDemonsRegistration.h.

Referenced by GenerateData2(), and SetSaveDeformationField().

bool mitk::DemonsRegistration::m_SaveResult

protected

Definition at line 114 of file mitkDemonsRegistration.h.

Referenced by GenerateData2(), and SetSaveResult().

float mitk::DemonsRegistration::m_StandardDeviation

protected

Definition at line 110 of file mitkDemonsRegistration.h.

Referenced by GenerateData2(), and SetStandardDeviation().

The documentation for this class was generated from the following files:

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation