|
| class | AdaptiveThresholdIterator |
| | Iterates over an image using a variable image function, which threshold can be varied during the iteration process. More...
|
| |
| class | ADCAverageFunctor |
| |
| class | ADCFitFunctor |
| |
| class | AdcImageFilter |
| |
| class | AnalyticalDiffusionQballReconstructionImageFilter |
| | This class takes as input one or more reference image (acquired in the absence of diffusion sensitizing gradients) and 'n' diffusion weighted images and their gradient directions and computes an image of orientation distribution function coefficients in a spherical harmonic basis. More...
|
| |
| class | B0ImageExtractionImageFilter |
| | This class takes as input a T2-weighted image and computes a brainmask. More...
|
| |
| class | B0ImageExtractionToSeparateImageFilter |
| | This class has an advanced functionality to the B0ImageExtractionImageFilter, however the b0 images are stored in a 3D+t image with each b0 image beeing a separate timestep and not averaged to a single 3D volume. More...
|
| |
| class | BiExpFitFunctor |
| |
| class | BrainMaskExtractionImageFilter |
| | This class takes as input a T2-weighted image and computes a brainmask. More...
|
| |
| class | BSplineDeformableTransformInitializer |
| | BSplineDeformableTransformInitializer is a helper class intended to initialize the grid parameters of a BSplineDeformableTransform based on the parameters of an image. More...
|
| |
| class | CartesianToPolarVectorImageFilter |
| |
| class | ConnectedAdaptiveThresholdImageFilter |
| | ImageFilter used for processing an image with an adaptive iterator (such as itkAdaptiveThresholdIterator) More...
|
| |
| class | ConnectednessFilter |
| |
| class | ConnectomicsNetworkToConnectivityMatrixImageFilter |
| |
| class | ContourExtractor2DImageFilter |
| | Computes a list of PolyLineParametricPath objects from the contours in a 2D image. More...
|
| |
| class | DftImageFilter |
| | 2D Discrete Fourier Transform Filter (complex to real). Special issue for Fiberfox -> rearranges slice. More...
|
| |
| class | DiffusionIntravoxelIncoherentMotionReconstructionImageFilter |
| |
| class | DiffusionKurtosisReconstructionImageFilter |
| | This filter provides the fit of the kurtosis (non-IVIM) signal to the data. More...
|
| |
| class | DiffusionMultiShellQballReconstructionImageFilter |
| |
| class | DiffusionQballGeneralizedFaImageFilter |
| |
| class | DiffusionQballPrepareVisualizationImageFilter |
| |
| class | DiffusionQballReconstructionImageFilter |
| | This class takes as input one or more reference images (acquired in the absence of diffusion sensitizing gradients) and 'n' diffusion weighted images and their gradient directions and computes an image of orientation distribution functions (ODFs). More...
|
| |
| class | DiffusionTensorPrincipalDirectionImageFilter |
| | Extracts principal eigenvectors of the input tensors. More...
|
| |
| class | DistanceMapFilter |
| |
| class | DwiGradientLengthCorrectionFilter |
| |
| class | DwiNormilzationFilter |
| | Normalizes the data vectors either using the specified reference value or the voxelwise baseline value. More...
|
| |
| class | DwiPhantomGenerationFilter |
| | Generation of synthetic diffusion weighted images using a second rank tensor model. More...
|
| |
| class | DWIVoxelFunctor |
| | The DWIVoxelFunctor class Abstract basisclass for voxelprocessing of Diffusion Weighted Images. More...
|
| |
| class | ElectrostaticRepulsionDiffusionGradientReductionFilter |
| | Select subset of the input vectors equally distributed over the sphere using an iterative electrostatic repulsion strategy. More...
|
| |
| class | EvaluateDirectionImagesFilter |
| | Evaluates the voxel-wise angular error between two sets of directions. More...
|
| |
| class | EvaluateTractogramDirectionsFilter |
| | Calculates the voxel-wise angular error of the input tractogram to a set of voxel-wise directions. More...
|
| |
| class | ExtendedLabelStatisticsImageFilter |
| | Extension of the itkLabelStatisticsImageFilter that also calculates the Skewness,Kurtosis,Entropy,Uniformity. More...
|
| |
| class | ExtendedStatisticsImageFilter |
| | Extension of the itkStatisticsImageFilter that also calculates the Skewness and Kurtosis. More...
|
| |
| class | ExtractChannelFromRgbaImageFilter |
| |
| class | ExtractDwiChannelFilter |
| | Remove specified channels from diffusion-weighted image. More...
|
| |
| class | FiberCurvatureFilter |
| | Generates artificial fibers distributed in and interpolated between the input planar figures. More...
|
| |
| class | FibersFromPlanarFiguresFilter |
| | Generates artificial fibers distributed in and interpolated between the input planar figures. More...
|
| |
| class | FieldmapGeneratorFilter |
| | Generate float image with artificial frequency maps used by Fiberfox. Simulates additional frequencies at (possibly multiple) positions based on 3D gaussians with the specified variance and amplitude and/or as a linear gradient in the image. See "Fiberfox: Facilitating the creation of realistic white matter software phantoms" (DOI: 10.1002/mrm.25045) for details. More...
|
| |
| class | FiniteDiffOdfMaximaExtractionFilter |
| | Extract ODF peaks by searching all local maxima on a densely sampled ODF und clustering these maxima to get the underlying fiber direction. NrOdfDirections: number of sampling points on the ODF surface (about 20000 is a good value) More...
|
| |
| class | FslPeakImageConverter |
| |
| class | GaussianInterpolateImageFunction |
| | Evaluates the Gaussian interpolation of an image. More...
|
| |
| class | GibbsTrackingFilter |
| | Performes global fiber tractography on the input Q-Ball or tensor image (Gibbs tracking, Reisert 2010). More...
|
| |
| class | HessianMatrixEigenvalueImageFilter |
| |
| class | ImageIOFactoryRegisterManager |
| |
| class | ImageToPathFilter |
| | Base class for filters that take an image as input and produce an path as output. More...
|
| |
| class | ImportMitkImageContainer |
| |
| class | Index |
| |
| class | IntelligentBinaryClosingFilter |
| |
| struct | IVIM_3param |
| |
| struct | IVIM_base |
| |
| struct | IVIM_d_and_f |
| |
| struct | IVIM_dstar_only |
| |
| struct | IVIM_fixd |
| |
| struct | IVIM_fixdstar |
| |
| class | IVIMSquaredEuclideanMetric |
| |
| class | IVIMSquaredEuclideanMetric< itk::VariableLengthVector< double > > |
| |
| class | IVIMSquaredEuclideanMetric< itk::VariableLengthVector< float > > |
| |
| class | IVIMSquaredEuclideanMetric< itk::Vector< double, 3 > > |
| |
| class | KspaceImageFilter |
| | Simulates k-space acquisition of one slice with a single shot EPI sequence. Enables the simulation of various effects occuring during real MR acquisitions: More...
|
| |
| struct | kurtosis_fit_lsq_function |
| |
| struct | kurtosis_fit_omit_unweighted |
| | A fitting function handling the unweighted signal b_0 as a fitted parameter. More...
|
| |
| struct | KurtosisFitConfiguration |
| |
| class | KurtosisFitFunctor |
| |
| class | LabelSampler |
| |
| class | LineHistogramBasedMassImageFilter |
| |
| class | LocalVariationImageFilter |
| | Calculates the local variation in each pixel. More...
|
| |
| class | MaskImageFilter2 |
| |
| struct | MeasAndBvals |
| |
| class | MergeDiffusionImagesFilter |
| | Merges diffusion weighted images, e.g. to generate one multishell volume from several single shell volumes. More...
|
| |
| class | MinMaxImageFilterWithIndex |
| |
| class | MinMaxLabelImageFilterWithIndex |
| |
| class | MLBSTrackingFilter |
| | Performes deterministic streamline tracking on the input tensor image. More...
|
| |
| class | MrtrixPeakImageConverter |
| |
| class | MultiGaussianImageSource |
| | Generate an 3-dimensional multigaussian image. More...
|
| |
| class | MultiHistogramFilter |
| |
| class | MutexLockHolder |
| |
| class | NeighborhoodFunctorImageFilter |
| |
| class | NonLocalMeansDenoisingFilter |
| | This class denoises a vectorimage according to the non-local means procedure. More...
|
| |
| class | NonUniformBSpline |
| | BSpline with nonuniform knot spacing. More...
|
| |
| class | OdfMaximaExtractionFilter |
| |
| class | OrientationDistributionFunction |
| | Represents an ODF for Q-Ball imaging. More...
|
| |
| class | PointShell |
| |
| class | PolarToCartesianVectorImageFilter |
| |
| class | ProjectionFilter |
| | Projection part of the TBSS pipeline. More...
|
| |
| class | QBallToRgbImageFilter |
| |
| class | RadialMultishellToSingleshellImageFilter |
| |
| class | RegularizedIVIMLocalVariationImageFilter |
| | Calculates the local variation in each pixel. More...
|
| |
| class | RegularizedIVIMReconstructionFilter |
| | Applies a total variation denoising filter to an image. More...
|
| |
| class | RegularizedIVIMReconstructionSingleIteration |
| | Applies a total variation denoising filter to an image. More...
|
| |
| class | RemoveDwiChannelFilter |
| | Remove spcified channels from diffusion-weighted image. More...
|
| |
| class | ResampleDwiImageFilter |
| | Resample DWI channel by channel. More...
|
| |
| class | ResidualImageFilter |
| |
| class | ShCoefficientImageExporter |
| |
| class | ShCoefficientImageImporter |
| |
| class | ShortestPathCostFunction |
| |
| class | ShortestPathCostFunctionLiveWire |
| | Cost function for LiveWire purposes. Specific features are considered to calculate cummulative costs of a link between two pixels. These are: More...
|
| |
| class | ShortestPathCostFunctionTbss |
| |
| class | ShortestPathImageFilter |
| |
| class | ShortestPathNode |
| |
| class | SkeletonizationFilter |
| | Skeletonization part of the TBSS pipeline. More...
|
| |
| class | SlowPolyLineParametricPath |
| | Represent a path of line segments through ND Space. More...
|
| |
| class | SmartPointer |
| |
| class | SmoothedClassProbabilites |
| |
| class | SplitDWImageFilter |
| | Splits a DW-Image passed in as input into a 3D-t image where each volume coresponds to a gradient image ( or the unweighted b0 ) More...
|
| |
| class | SquaredEuclideanMetric |
| |
| class | StochasticTractographyFilter |
| |
| class | StreamlineTrackingFilter |
| | Performes deterministic streamline tracking on the input tensor image. More...
|
| |
| class | StructureTensorEigenvalueImageFilter |
| |
| class | TensorDerivedMeasurementsFilter |
| |
| class | TensorImageToDiffusionImageFilter |
| |
| class | TensorImageToQBallImageFilter |
| |
| class | TensorReconstructionWithEigenvalueCorrectionFilter |
| |
| class | TensorToL2NormImageFilter |
| |
| class | TensorToRgbImageFilter |
| |
| class | ThreeLayerPointShell |
| |
| class | TotalVariationDenoisingImageFilter |
| | Applies a total variation denoising filter to an image. More...
|
| |
| class | TotalVariationSingleIterationImageFilter |
| | Applies a total variation denoising filter to an image. More...
|
| |
| class | TractDensityImageFilter |
| | Generates tract density images from input fiberbundles (Calamante 2010). More...
|
| |
| class | TractsToDWIImageFilter |
| | Generates artificial diffusion weighted image volume from the input fiberbundle using a generic multicompartment model. See "Fiberfox: Facilitating the creation of realistic white matter software phantoms" (DOI: 10.1002/mrm.25045) for details. More...
|
| |
| class | TractsToFiberEndingsImageFilter |
| | Generates image where the pixel values are set according to the number of fibers ending in the voxel. More...
|
| |
| class | TractsToRgbaImageFilter |
| | Generates RGBA image from the input fibers where color values are set according to the local fiber directions. More...
|
| |
| class | TractsToVectorImageFilter |
| | Extracts the voxel-wise main directions of the input fiber bundle. More...
|
| |
| class | TransformIOFactoryRegisterManager |
| |
| class | VariableLengthVector |
| |
| class | VectorImageToImageFilter |
| | This class extracts an image out of a vectorimage. More...
|
| |
| class | VtkAbstractTransform |
| | Adapter from vtkAbstractTransform to itk::Transform<TScalarType, 3, 3> More...
|
| |
1.8.9.1 
