itk::FieldmapGeneratorFilter< OutputImageType > Class Template Reference

Generate float image with artificial frequency maps used by Fiberfox. Simulates additional frequencies at (possibly multiple) positions based on 3D gaussians with the specified variance and amplitude and/or as a linear gradient in the image. See "Fiberfox: Facilitating the creation of realistic white matter software phantoms" (DOI: 10.1002/mrm.25045) for details. More...

#include <itkFieldmapGeneratorFilter.h>

Inheritance diagram for itk::FieldmapGeneratorFilter< OutputImageType >:

Collaboration diagram for itk::FieldmapGeneratorFilter< OutputImageType >:

Public Types
typedef FieldmapGeneratorFilter	Self
typedef ProcessObject	Superclass
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef OutputImageType::PixelType	PixelType
typedef OutputImageType::IndexType	IndexType
typedef itk::ImageRegion< 3 >	OutputImageRegionType
typedef itk::Matrix< double, 3, 3 >	MatrixType

Public Member Functions
Pointer	Clone () const
virtual const char *	GetClassName () const
virtual void	SetSpacing (itk::Vector< double > _arg)
virtual void	SetOrigin (mitk::Point3D _arg)
virtual void	SetDirectionMatrix (MatrixType _arg)
virtual void	SetImageRegion (OutputImageRegionType _arg)
void	SetGradient (vnl_vector_fixed< double, 3 > gradient)
void	SetOffset (vnl_vector_fixed< double, 3 > offset)
void	SetVariances (std::vector< double > variances)
void	SetHeights (std::vector< double > heights)
void	SetWorldPositions (std::vector< mitk::Point3D > worldPositions)

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
void	BeforeThreadedGenerateData ()
void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
	FieldmapGeneratorFilter ()
virtual	~FieldmapGeneratorFilter ()

Protected Attributes
itk::Vector< double >	m_Spacing
	output image spacing More...
mitk::Point3D	m_Origin
	output image origin More...
MatrixType	m_DirectionMatrix
	output image rotation More...
OutputImageRegionType	m_ImageRegion
	output image size More...
std::vector< double >	m_Variances
std::vector< double >	m_Heights
std::vector< mitk::Point3D >	m_WorldPositions
vnl_vector_fixed< double, 3 >	m_Gradient
vnl_vector_fixed< double, 3 >	m_Offset

Detailed Description

template<class OutputImageType>
class itk::FieldmapGeneratorFilter< OutputImageType >

Generate float image with artificial frequency maps used by Fiberfox. Simulates additional frequencies at (possibly multiple) positions based on 3D gaussians with the specified variance and amplitude and/or as a linear gradient in the image. See "Fiberfox: Facilitating the creation of realistic white matter software phantoms" (DOI: 10.1002/mrm.25045) for details.

Definition at line 35 of file itkFieldmapGeneratorFilter.h.

Member Typedef Documentation

template<class OutputImageType >

typedef SmartPointer< const Self > itk::FieldmapGeneratorFilter< OutputImageType >::ConstPointer

Definition at line 42 of file itkFieldmapGeneratorFilter.h.

template<class OutputImageType >

typedef OutputImageType::IndexType itk::FieldmapGeneratorFilter< OutputImageType >::IndexType

Definition at line 45 of file itkFieldmapGeneratorFilter.h.

template<class OutputImageType >

typedef itk::Matrix<double, 3, 3> itk::FieldmapGeneratorFilter< OutputImageType >::MatrixType

Definition at line 47 of file itkFieldmapGeneratorFilter.h.

template<class OutputImageType >

typedef itk::ImageRegion<3> itk::FieldmapGeneratorFilter< OutputImageType >::OutputImageRegionType

Definition at line 46 of file itkFieldmapGeneratorFilter.h.

template<class OutputImageType >

typedef OutputImageType::PixelType itk::FieldmapGeneratorFilter< OutputImageType >::PixelType

Definition at line 44 of file itkFieldmapGeneratorFilter.h.

template<class OutputImageType >

typedef SmartPointer< Self > itk::FieldmapGeneratorFilter< OutputImageType >::Pointer

Definition at line 41 of file itkFieldmapGeneratorFilter.h.

template<class OutputImageType >

typedef FieldmapGeneratorFilter itk::FieldmapGeneratorFilter< OutputImageType >::Self

Definition at line 39 of file itkFieldmapGeneratorFilter.h.

template<class OutputImageType >

typedef ProcessObject itk::FieldmapGeneratorFilter< OutputImageType >::Superclass

Definition at line 40 of file itkFieldmapGeneratorFilter.h.

Constructor & Destructor Documentation

template<class OutputImageType >

itk::FieldmapGeneratorFilter< OutputImageType >::FieldmapGeneratorFilter ( )

protected

Definition at line 25 of file itkFieldmapGeneratorFilter.cpp.

template<class OutputImageType >

itk::FieldmapGeneratorFilter< OutputImageType >::~FieldmapGeneratorFilter ( )

protectedvirtual

Definition at line 32 of file itkFieldmapGeneratorFilter.cpp.

Member Function Documentation

template<class OutputImageType >

void itk::FieldmapGeneratorFilter< OutputImageType >::BeforeThreadedGenerateData ( void  )

protected

Definition at line 37 of file itkFieldmapGeneratorFilter.cpp.

References mitk::New().

template<class OutputImageType >

Pointer itk::FieldmapGeneratorFilter< OutputImageType >::Clone

(

)

const

template<class OutputImageType >

virtual const char* itk::FieldmapGeneratorFilter< OutputImageType >::GetClassName ( ) const

virtual

template<class OutputImageType >

static Pointer itk::FieldmapGeneratorFilter< OutputImageType >::New ( )

static

template<class OutputImageType >

virtual void itk::FieldmapGeneratorFilter< OutputImageType >::SetDirectionMatrix ( MatrixType  _arg )

virtual

template<class OutputImageType >

void itk::FieldmapGeneratorFilter< OutputImageType >::SetGradient ( vnl_vector_fixed< double, 3 >  gradient )

inline

Gradient direction and offset.

Definition at line 60 of file itkFieldmapGeneratorFilter.h.

References itk::FieldmapGeneratorFilter< OutputImageType >::m_Gradient.

template<class OutputImageType >

void itk::FieldmapGeneratorFilter< OutputImageType >::SetHeights ( std::vector< double >  heights )

inline

Definition at line 65 of file itkFieldmapGeneratorFilter.h.

References itk::FieldmapGeneratorFilter< OutputImageType >::m_Heights.

template<class OutputImageType >

virtual void itk::FieldmapGeneratorFilter< OutputImageType >::SetImageRegion ( OutputImageRegionType  _arg )

virtual

template<class OutputImageType >

void itk::FieldmapGeneratorFilter< OutputImageType >::SetOffset ( vnl_vector_fixed< double, 3 >  offset )

inline

Definition at line 61 of file itkFieldmapGeneratorFilter.h.

References itk::FieldmapGeneratorFilter< OutputImageType >::m_Offset, and offset.

template<class OutputImageType >

virtual void itk::FieldmapGeneratorFilter< OutputImageType >::SetOrigin ( mitk::Point3D  _arg )

virtual

template<class OutputImageType >

virtual void itk::FieldmapGeneratorFilter< OutputImageType >::SetSpacing ( itk::Vector< double >  _arg )

virtual

Output image parameters.

template<class OutputImageType >

void itk::FieldmapGeneratorFilter< OutputImageType >::SetVariances ( std::vector< double >  variances )

inline

Parameters of gaussian frequency sources.

Definition at line 64 of file itkFieldmapGeneratorFilter.h.

References itk::FieldmapGeneratorFilter< OutputImageType >::m_Variances.

template<class OutputImageType >

void itk::FieldmapGeneratorFilter< OutputImageType >::SetWorldPositions ( std::vector< mitk::Point3D >  worldPositions )

inline

Definition at line 66 of file itkFieldmapGeneratorFilter.h.

References itk::FieldmapGeneratorFilter< OutputImageType >::m_WorldPositions.

template<class OutputImageType >

void itk::FieldmapGeneratorFilter< OutputImageType >::ThreadedGenerateData ( const OutputImageRegionType &  outputRegionForThread, ThreadIdType  threadId  )

protected

Definition at line 52 of file itkFieldmapGeneratorFilter.cpp.

References MITK_INFO.

Member Data Documentation

template<class OutputImageType >

MatrixType itk::FieldmapGeneratorFilter< OutputImageType >::m_DirectionMatrix

protected

output image rotation

Definition at line 78 of file itkFieldmapGeneratorFilter.h.

template<class OutputImageType >

vnl_vector_fixed< double, 3 > itk::FieldmapGeneratorFilter< OutputImageType >::m_Gradient

protected

Definition at line 83 of file itkFieldmapGeneratorFilter.h.

Referenced by itk::FieldmapGeneratorFilter< OutputImageType >::SetGradient().

template<class OutputImageType >

std::vector< double > itk::FieldmapGeneratorFilter< OutputImageType >::m_Heights

protected

Definition at line 81 of file itkFieldmapGeneratorFilter.h.

Referenced by itk::FieldmapGeneratorFilter< OutputImageType >::SetHeights().

template<class OutputImageType >

OutputImageRegionType itk::FieldmapGeneratorFilter< OutputImageType >::m_ImageRegion

protected

output image size

Definition at line 79 of file itkFieldmapGeneratorFilter.h.

template<class OutputImageType >

vnl_vector_fixed< double, 3 > itk::FieldmapGeneratorFilter< OutputImageType >::m_Offset

protected

Definition at line 84 of file itkFieldmapGeneratorFilter.h.

Referenced by itk::FieldmapGeneratorFilter< OutputImageType >::SetOffset().

template<class OutputImageType >

mitk::Point3D itk::FieldmapGeneratorFilter< OutputImageType >::m_Origin

protected

output image origin

Definition at line 77 of file itkFieldmapGeneratorFilter.h.

template<class OutputImageType >

itk::Vector<double> itk::FieldmapGeneratorFilter< OutputImageType >::m_Spacing

protected

output image spacing

Definition at line 76 of file itkFieldmapGeneratorFilter.h.

template<class OutputImageType >

std::vector< double > itk::FieldmapGeneratorFilter< OutputImageType >::m_Variances

protected

Definition at line 80 of file itkFieldmapGeneratorFilter.h.

Referenced by itk::FieldmapGeneratorFilter< OutputImageType >::SetVariances().

template<class OutputImageType >

std::vector< mitk::Point3D > itk::FieldmapGeneratorFilter< OutputImageType >::m_WorldPositions

protected

Definition at line 82 of file itkFieldmapGeneratorFilter.h.

Referenced by itk::FieldmapGeneratorFilter< OutputImageType >::SetWorldPositions().

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The documentation for this class was generated from the following files:

• itkFieldmapGeneratorFilter.h
• itkFieldmapGeneratorFilter.cpp