Calculates the voxel-wise angular error of the input tractogram to a set of voxel-wise directions. More...

#include <itkEvaluateTractogramDirectionsFilter.h>

Inheritance diagram for itk::EvaluateTractogramDirectionsFilter< PixelType >:

Collaboration diagram for itk::EvaluateTractogramDirectionsFilter< PixelType >:

Public Types
typedef EvaluateTractogramDirectionsFilter	Self

typedef SmartPointer< Self >	Pointer

typedef SmartPointer< const Self >	ConstPointer

typedef ImageSource< Image< PixelType, 3 > >	Superclass

typedef Superclass::OutputImageRegionType	OutputImageRegionType

typedef Superclass::OutputImageType	OutputImageType

typedef mitk::FiberBundle	FiberBundleType

typedef Vector< float, 3 >	DirectionType

typedef Image< DirectionType, 3 >	DirectionImageType

typedef VectorContainer< int, DirectionImageType::Pointer >	DirectionImageContainerType

typedef Image< float, 3 >	FloatImageType

typedef Image< bool, 3 >	BoolImageType

typedef Image< unsigned char, 3 >	UCharImageType

typedef Image< double, 3 >	DoubleImageType

Public Member Functions
Pointer	Clone () const

virtual const char *	GetClassName () const

virtual void	SetTractogram (FiberBundleType::Pointer _arg)
	Input tractogram. More...

virtual void	SetReferenceImageSet (DirectionImageContainerType::Pointer _arg)
	Input images containing one reference direction per voxel. More...

virtual void	SetMaskImage (UCharImageType::Pointer _arg)
	Calculation is only performed inside of the mask image. More...

virtual void	SetIgnoreMissingDirections (bool _arg)
	If in one voxel, the number of directions differs between the input tractogram and the reference, the excess directions are ignored. Otherwise, the error to the next closest direction is calculated. More...

virtual void	SetUseInterpolation (bool _arg)
	Use trilinear interpolation. More...

virtual float	GetMeanAngularError ()

virtual float	GetMinAngularError ()

virtual float	GetMaxAngularError ()

virtual float	GetVarAngularError ()

virtual float	GetMedianAngularError ()

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
	EvaluateTractogramDirectionsFilter ()

	~EvaluateTractogramDirectionsFilter ()

void	GenerateData ()

itk::Point< PixelType, 3 >	GetItkPoint (double point[3])

itk::Vector< PixelType, 3 >	GetItkVector (double point[3])

vnl_vector_fixed< PixelType, 3 >	GetVnlVector (double point[3])

vnl_vector_fixed< PixelType, 3 >	GetVnlVector (Vector< PixelType, 3 > &vector)

Protected Attributes
UCharImageType::Pointer	m_MaskImage

DirectionImageContainerType::Pointer	m_ReferenceImageSet

bool	m_IgnoreMissingDirections

double	m_MeanAngularError

double	m_MedianAngularError

double	m_MaxAngularError

double	m_MinAngularError

double	m_VarAngularError

std::vector< double >	m_AngularErrorVector

double	m_Eps

FiberBundleType::Pointer	m_Tractogram

bool	m_UseInterpolation

Detailed Description

template<class PixelType>
class itk::EvaluateTractogramDirectionsFilter< PixelType >

Calculates the voxel-wise angular error of the input tractogram to a set of voxel-wise directions.

Definition at line 35 of file itkEvaluateTractogramDirectionsFilter.h.

Member Typedef Documentation

template<class PixelType >

typedef Image< bool, 3 > itk::EvaluateTractogramDirectionsFilter< PixelType >::BoolImageType

Definition at line 59 of file itkEvaluateTractogramDirectionsFilter.h.

template<class PixelType >

typedef SmartPointer<const Self> itk::EvaluateTractogramDirectionsFilter< PixelType >::ConstPointer

Definition at line 42 of file itkEvaluateTractogramDirectionsFilter.h.

template<class PixelType >

typedef VectorContainer< int, DirectionImageType::Pointer > itk::EvaluateTractogramDirectionsFilter< PixelType >::DirectionImageContainerType

Definition at line 57 of file itkEvaluateTractogramDirectionsFilter.h.

template<class PixelType >

typedef Image< DirectionType, 3 > itk::EvaluateTractogramDirectionsFilter< PixelType >::DirectionImageType

Definition at line 56 of file itkEvaluateTractogramDirectionsFilter.h.

template<class PixelType >

typedef Vector< float, 3 > itk::EvaluateTractogramDirectionsFilter< PixelType >::DirectionType

Definition at line 55 of file itkEvaluateTractogramDirectionsFilter.h.

template<class PixelType >

typedef Image< double, 3 > itk::EvaluateTractogramDirectionsFilter< PixelType >::DoubleImageType

Definition at line 61 of file itkEvaluateTractogramDirectionsFilter.h.

template<class PixelType >

typedef mitk::FiberBundle itk::EvaluateTractogramDirectionsFilter< PixelType >::FiberBundleType

Definition at line 54 of file itkEvaluateTractogramDirectionsFilter.h.

template<class PixelType >

typedef Image< float, 3 > itk::EvaluateTractogramDirectionsFilter< PixelType >::FloatImageType

Definition at line 58 of file itkEvaluateTractogramDirectionsFilter.h.

template<class PixelType >

typedef Superclass::OutputImageRegionType itk::EvaluateTractogramDirectionsFilter< PixelType >::OutputImageRegionType

Definition at line 44 of file itkEvaluateTractogramDirectionsFilter.h.

template<class PixelType >

typedef Superclass::OutputImageType itk::EvaluateTractogramDirectionsFilter< PixelType >::OutputImageType

Definition at line 45 of file itkEvaluateTractogramDirectionsFilter.h.

template<class PixelType >

typedef SmartPointer<Self> itk::EvaluateTractogramDirectionsFilter< PixelType >::Pointer

Definition at line 41 of file itkEvaluateTractogramDirectionsFilter.h.

template<class PixelType >

typedef EvaluateTractogramDirectionsFilter itk::EvaluateTractogramDirectionsFilter< PixelType >::Self

Definition at line 40 of file itkEvaluateTractogramDirectionsFilter.h.

template<class PixelType >

typedef ImageSource< Image< PixelType, 3 > > itk::EvaluateTractogramDirectionsFilter< PixelType >::Superclass

Definition at line 43 of file itkEvaluateTractogramDirectionsFilter.h.

template<class PixelType >

typedef Image< unsigned char, 3 > itk::EvaluateTractogramDirectionsFilter< PixelType >::UCharImageType

Definition at line 60 of file itkEvaluateTractogramDirectionsFilter.h.

Constructor & Destructor Documentation

template<class PixelType >

itk::EvaluateTractogramDirectionsFilter< PixelType >::EvaluateTractogramDirectionsFilter ( )

protected

Definition at line 33 of file itkEvaluateTractogramDirectionsFilter.cpp.

template<class PixelType >

itk::EvaluateTractogramDirectionsFilter< PixelType >::~EvaluateTractogramDirectionsFilter ( )

inlineprotected

Definition at line 78 of file itkEvaluateTractogramDirectionsFilter.h.

Member Function Documentation

template<class PixelType >

Pointer itk::EvaluateTractogramDirectionsFilter< PixelType >::Clone ( ) const

template<class PixelType >

void itk::EvaluateTractogramDirectionsFilter< PixelType >::GenerateData ( )

protected

Definition at line 83 of file itkEvaluateTractogramDirectionsFilter.cpp.

References M_PI, max(), MITK_INFO, and mitk::New().

template<class PixelType >

virtual const char* itk::EvaluateTractogramDirectionsFilter< PixelType >::GetClassName ( ) const

virtual

Runtime information support.

template<class PixelType >

itk::Point< PixelType, 3 > itk::EvaluateTractogramDirectionsFilter< PixelType >::GetItkPoint ( double point[3] )

protected

Definition at line 73 of file itkEvaluateTractogramDirectionsFilter.cpp.

template<class PixelType >

itk::Vector< PixelType, 3 > itk::EvaluateTractogramDirectionsFilter< PixelType >::GetItkVector ( double point[3] )

protected

Definition at line 43 of file itkEvaluateTractogramDirectionsFilter.cpp.

template<class PixelType >

virtual float itk::EvaluateTractogramDirectionsFilter< PixelType >::GetMaxAngularError ( )

virtual

template<class PixelType >

virtual float itk::EvaluateTractogramDirectionsFilter< PixelType >::GetMeanAngularError ( )

virtual

Output statistics.

template<class PixelType >

virtual float itk::EvaluateTractogramDirectionsFilter< PixelType >::GetMedianAngularError ( )

virtual

template<class PixelType >

virtual float itk::EvaluateTractogramDirectionsFilter< PixelType >::GetMinAngularError ( )

virtual

template<class PixelType >

virtual float itk::EvaluateTractogramDirectionsFilter< PixelType >::GetVarAngularError ( )

virtual

template<class PixelType >

vnl_vector_fixed< PixelType, 3 > itk::EvaluateTractogramDirectionsFilter< PixelType >::GetVnlVector ( double point[3] )

protected

Definition at line 53 of file itkEvaluateTractogramDirectionsFilter.cpp.

template<class PixelType >

vnl_vector_fixed< PixelType, 3 > itk::EvaluateTractogramDirectionsFilter< PixelType >::GetVnlVector ( Vector< PixelType, 3 > & vector )

protected

Definition at line 63 of file itkEvaluateTractogramDirectionsFilter.cpp.

template<class PixelType >

static Pointer itk::EvaluateTractogramDirectionsFilter< PixelType >::New ( )

static

Method for creation through the object factory.

template<class PixelType >

virtual void itk::EvaluateTractogramDirectionsFilter< PixelType >::SetIgnoreMissingDirections ( bool _arg )

virtual

If in one voxel, the number of directions differs between the input tractogram and the reference, the excess directions are ignored. Otherwise, the error to the next closest direction is calculated.

template<class PixelType >

virtual void itk::EvaluateTractogramDirectionsFilter< PixelType >::SetMaskImage ( UCharImageType::Pointer _arg )

virtual

Calculation is only performed inside of the mask image.

template<class PixelType >

virtual void itk::EvaluateTractogramDirectionsFilter< PixelType >::SetReferenceImageSet ( DirectionImageContainerType::Pointer _arg )

virtual

Input images containing one reference direction per voxel.

template<class PixelType >

virtual void itk::EvaluateTractogramDirectionsFilter< PixelType >::SetTractogram ( FiberBundleType::Pointer _arg )