TumorProgressionMapping.cpp File Reference

#include <mitkIOUtil.h>
#include <mitkImageAccessByItk.h>
#include <mitkImageCast.h>
#include <mitkImagePixelReadAccessor.h>
#include <mitkImagePixelWriteAccessor.h>
#include <mitkImageToItk.h>
#include <mitkImageWriter.h>
#include <mitkPixelType.h>
#include <mitkPlaneGeometry.h>
#include "itkImageDuplicator.h"
#include "itkPermuteAxesImageFilter.h"
#include "itkTileImageFilter.h"
#include <itkExtractImageFilter.h>
#include <itkImageFileWriter.h>
#include <itkRGBPixel.h>
#include <itkResampleImageFilter.h>
#include <itkVTKImageImport.h>
#include <itkDirectory.h>
#include <itksys/SystemTools.hxx>
#include <vtkCellArray.h>
#include <vtkFreeTypeStringToImage.h>
#include <vtkImageData.h>
#include <vtkTextProperty.h>
#include <vtkUnicodeString.h>
#include <mitkCommandLineParser.h>
#include "itkRescaleIntensityImageFilter.h"
#include <typeExtension.h>

Go to the source code of this file.

Typedefs
typedef unsigned short	PixelType
typedef double	InputPixelType
typedef itk::Image< itk::RGBPixel< PixelType >, 2 >	RGB2DImage
typedef itk::RGBPixel< PixelType >	RGBPixelType
typedef std::vector< std::string >	FileList
typedef std::vector< mitk::Image::Pointer >	ImageList

Functions
static FileList	CreateFileList (std::string folder, std::string postfix)
	Create list of all files in provided folder ending with same postfix. More...
static std::string	GetName (std::string fileName, std::string suffix="_T2.nrrd")
static std::string	GetDate (std::string fileName, std::string suffix="_T2.nrrd")
static ImageList	LoadPreprocessedFiles (FileList files)
int	main (int argc, char *argv[])

Typedef Documentation

typedef std::vector<std::string> FileList

Definition at line 60 of file TumorProgressionMapping.cpp.

typedef std::vector<mitk::Image::Pointer> ImageList

Definition at line 61 of file TumorProgressionMapping.cpp.

typedef double InputPixelType

Definition at line 56 of file TumorProgressionMapping.cpp.

typedef unsigned short PixelType

Definition at line 55 of file TumorProgressionMapping.cpp.

typedef itk::Image<itk::RGBPixel<PixelType>, 2> RGB2DImage

Definition at line 57 of file TumorProgressionMapping.cpp.

typedef itk::RGBPixel<PixelType> RGBPixelType

Definition at line 58 of file TumorProgressionMapping.cpp.

Function Documentation

static FileList CreateFileList ( std::string  folder, std::string  postfix  )

static

Create list of all files in provided folder ending with same postfix.

Definition at line 64 of file TumorProgressionMapping.cpp.

References filename, and mitk::New().

Referenced by main().

static std::string GetDate ( std::string  fileName, std::string  suffix = "_T2.nrrd"  )

static

Definition at line 283 of file TumorProgressionMapping.cpp.

Referenced by main().

static std::string GetName ( std::string  fileName, std::string  suffix = "_T2.nrrd"  )

static

Definition at line 277 of file TumorProgressionMapping.cpp.

Referenced by main().

static ImageList LoadPreprocessedFiles ( FileList  files )

static

Definition at line 290 of file TumorProgressionMapping.cpp.

References images, and mitk::IOUtil::LoadImage().

Referenced by main().

int main	(	int	argc,
		char *	argv[]
	)

END Parsing CL Options

Definition at line 300 of file TumorProgressionMapping.cpp.

References mitkCommandLineParser::addArgument(), us::any_cast(), mitkCommandLineParser::Bool, mitk::CastToItkImage(), CreateFileList(), mitkCommandLineParser::Float, mitk::ImagePixelReadAccessor< TPixel, VDimension >::GetData(), GetDate(), mitk::Image::GetDimensions(), mitk::BaseData::GetGeometry(), mitk::BaseGeometry::GetIndexToWorldTransform(), GetName(), mitk::BaseGeometry::GetOrigin(), mitk::Image::GetPixelType(), mitk::BaseGeometry::GetSpacing(), mitkCommandLineParser::helpText(), mitkCommandLineParser::InputDirectory, mitkCommandLineParser::Int, LoadPreprocessedFiles(), MITK_INFO, mitk::New(), mitk::Image::New(), mitkCommandLineParser::OutputFile, mitkCommandLineParser::parseArguments(), mitk::IOUtil::Save(), mitkCommandLineParser::setArgumentPrefix(), mitkCommandLineParser::setCategory(), mitkCommandLineParser::setContributor(), mitkCommandLineParser::setDescription(), mitkCommandLineParser::setTitle(), and mitkCommandLineParser::String.