#include <mitkNrrdTbssImageReader.h>

Inheritance diagram for mitk::NrrdTbssImageReader:

Collaboration diagram for mitk::NrrdTbssImageReader:

Public Types
typedef mitk::TbssImage	OutputType

typedef itk::VectorImage< float, 3 >	ImageType

typedef TbssImageSource	TbssVolSourceType

Public Types inherited from mitk::TbssImageSource
typedef TbssImage	OutputType

typedef itk::DataObject::Pointer	DataObjectPointer

Public Types inherited from mitk::ImageSource
typedef ImageSource	Self

typedef BaseDataSource	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef mitk::Image	OutputImageType
	Some convenient typedefs. More...

typedef OutputImageType	OutputType

typedef OutputImageType::Pointer	OutputImagePointer

typedef SlicedData::RegionType	OutputImageRegionType

Public Types inherited from mitk::BaseDataSource
typedef BaseDataSource	Self

typedef itk::ProcessObject	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef BaseData	OutputType

typedef itk::DataObject::DataObjectIdentifierType	DataObjectIdentifierType

Public Types inherited from mitk::FileReader
typedef FileReader	Self

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

Public Member Functions
	mitkClassMacro (NrrdTbssImageReader, TbssVolSourceType) static Pointer New()

Pointer	Clone () const

const char *	GetFileName () const override

void	SetFileName (const char *aFileName) override
	Specify the file to load. More...

const char *	GetFilePrefix () const override
	Get the specified file prefix for the file(s) to load. More...

void	SetFilePrefix (const char *aFilePrefix) override
	Specify file prefix for the file(s) to load. More...

const char *	GetFilePattern () const override
	Get the specified file pattern for the file(s) to load. The sprintf format used to build filename from FilePrefix and number. More...

void	SetFilePattern (const char *aFilePattern) override
	Specified file pattern for the file(s) to load. The sprintf format used to build filename from FilePrefix and number. More...

Public Member Functions inherited from mitk::TbssImageSource
	mitkClassMacro (TbssImageSource, BaseDataSource) static Pointer New()

Pointer	Clone () const

virtual itk::DataObject::Pointer	MakeOutput (DataObjectPointerArraySizeType idx) override

virtual itk::DataObject::Pointer	MakeOutput (const DataObjectIdentifierType &name) override

OutputType *	GetOutput ()

OutputType *	GetOutput (unsigned int idx)

Public Member Functions inherited from mitk::ImageSource
virtual std::vector< std::string >	GetClassHierarchy () const override

virtual const char *	GetClassName () const

Pointer	Clone () const

OutputType *	GetOutput ()
	Get the output data of this image source object. More...

const OutputType *	GetOutput () const

OutputType *	GetOutput (DataObjectPointerArraySizeType idx)

const OutputType *	GetOutput (DataObjectPointerArraySizeType idx) const

virtual vtkImageData *	GetVtkImageData ()

virtual const vtkImageData *	GetVtkImageData () const

Public Member Functions inherited from mitk::BaseDataSource
OutputType *	GetOutput ()

const OutputType *	GetOutput () const

OutputType *	GetOutput (DataObjectPointerArraySizeType idx)

const OutputType *	GetOutput (DataObjectPointerArraySizeType idx) const

virtual void	GraftOutput (OutputType *output)
	Graft the specified BaseData onto this BaseDataSource's output. More...

virtual void	GraftOutput (const DataObjectIdentifierType &key, OutputType *output)

virtual void	GraftNthOutput (unsigned int idx, OutputType *output)
	Graft the specified base data object onto this BaseDataSource's idx'th output. More...

bool	Updating () const
	Access itk::ProcessObject::m_Updating. More...

Public Member Functions inherited from mitk::FileReader
virtual std::vector< std::string >	GetClassHierarchy () const

	itkTypeMacroNoParent (FileReader) virtual const char *GetFileName() const =0
	Get the specified the file to load. More...

virtual bool	CanReadFromMemory ()
	Specifies, whether the file reader also can read a file from a memory buffer. More...

virtual void	SetReadFromMemory (bool read)
	Set/Get functions to advise the file reader to use a memory array for reading a file. More...

virtual bool	GetReadFromMemory ()

virtual void	SetMemoryBuffer (const char *dataArray, unsigned int size)
	To be used along with a call of SetReadFromMemory(true). This sets the memory buffer and the size from which the reader will read. More...

Static Public Member Functions
static bool	CanReadFile (const std::string filename, const std::string filePrefix, const std::string filePattern)

Static Public Member Functions inherited from mitk::ImageSource
static const char *	GetStaticNameOfClass ()

static Pointer	New ()
	Method for creation through the object factory. More...

Static Public Member Functions inherited from mitk::BaseDataSource
static const char *	GetStaticNameOfClass ()

Static Public Member Functions inherited from mitk::FileReader
static const char *	GetStaticNameOfClass ()

Protected Member Functions
virtual void	GenerateData () override

virtual void	GenerateOutputInformation () override

void	Tokenize (const std::string &str, std::vector< std::string > &tokens, const std::string &delimiters=" ")

Protected Member Functions inherited from mitk::TbssImageSource
	TbssImageSource ()

virtual	~TbssImageSource ()

Protected Member Functions inherited from mitk::ImageSource
	ImageSource ()

virtual	~ImageSource ()

virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, itk::ThreadIdType threadId)
	If an imaging filter can be implemented as a multithreaded algorithm, the filter will provide an implementation of ThreadedGenerateData(). More...

virtual void	PrepareOutputs () override
	This method is intentionally left blank. More...

virtual void	AllocateOutputs ()
	The GenerateData method normally allocates the buffers for all of the outputs of a filter. More...

virtual void	BeforeThreadedGenerateData ()
	If an imaging filter needs to perform processing after the buffer has been allocated but before threads are spawned, the filter can can provide an implementation for BeforeThreadedGenerateData(). More...

virtual void	AfterThreadedGenerateData ()
	If an imaging filter needs to perform processing after all processing threads have completed, the filter can can provide an implementation for AfterThreadedGenerateData(). More...

virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int num, OutputImageRegionType &splitRegion)
	Split the output's RequestedRegion into "num" pieces, returning region "i" as "splitRegion". More...

Protected Member Functions inherited from mitk::BaseDataSource
	BaseDataSource ()

virtual	~BaseDataSource ()

Protected Member Functions inherited from mitk::FileReader
	FileReader ()

virtual	~FileReader ()

Protected Attributes
std::string	m_FileName

std::string	m_FilePrefix

std::string	m_FilePattern

std::vector< std::pair< std::string, int > >	m_GroupInfo

OutputType::Pointer	m_OutputCache

itk::TimeStamp	m_CacheTime

Protected Attributes inherited from mitk::FileReader
bool	m_CanReadFromMemory

bool	m_ReadFromMemory

const char *	m_MemoryBuffer

unsigned int	m_MemorySize

Additional Inherited Members
Static Protected Member Functions inherited from mitk::ImageSource
static ITK_THREAD_RETURN_TYPE	ThreaderCallback (void *arg)
	Static function used as a "callback" by the MultiThreader. More...

Static Protected Member Functions inherited from mitk::BaseDataSource
static Pointer	New ()

Detailed Description

Definition at line 34 of file mitkNrrdTbssImageReader.h.

Member Typedef Documentation

typedef itk::VectorImage<float,3> mitk::NrrdTbssImageReader::ImageType

Definition at line 39 of file mitkNrrdTbssImageReader.h.

typedef mitk::TbssImage mitk::NrrdTbssImageReader::OutputType

Definition at line 38 of file mitkNrrdTbssImageReader.h.

typedef TbssImageSource mitk::NrrdTbssImageReader::TbssVolSourceType

Definition at line 40 of file mitkNrrdTbssImageReader.h.

Member Function Documentation

bool mitk::NrrdTbssImageReader::CanReadFile	(	const std::string	filename,
		const std::string	filePrefix,
		const std::string	filePattern
	)

static

Definition at line 253 of file mitkNrrdTbssImageReader.cpp.

References MITK_INFO, and mitk::New().

Pointer mitk::NrrdTbssImageReader::Clone ( ) const

void mitk::NrrdTbssImageReader::GenerateData ( )

overrideprotectedvirtual

Does the real work.

Reimplemented from mitk::ImageSource.

Definition at line 38 of file mitkNrrdTbssImageReader.cpp.

void mitk::NrrdTbssImageReader::GenerateOutputInformation ( void )

overrideprotectedvirtual

Definition at line 70 of file mitkNrrdTbssImageReader.cpp.

References MITK_INFO, and mitk::New().

const char * mitk::NrrdTbssImageReader::GetFileName ( ) const

override

Definition at line 217 of file mitkNrrdTbssImageReader.cpp.

const char * mitk::NrrdTbssImageReader::GetFilePattern ( ) const

overridevirtual

Get the specified file pattern for the file(s) to load. The sprintf format used to build filename from FilePrefix and number.

You should specify either a FileName or FilePrefix. Use FilePrefix if the data is stored in multiple files.

Implements mitk::FileReader.

Definition at line 241 of file mitkNrrdTbssImageReader.cpp.

const char * mitk::NrrdTbssImageReader::GetFilePrefix ( ) const

overridevirtual

Get the specified file prefix for the file(s) to load.

You should specify either a FileName or FilePrefix. Use FilePrefix if the data is stored in multiple files.

Implements mitk::FileReader.

Definition at line 229 of file mitkNrrdTbssImageReader.cpp.

mitk::NrrdTbssImageReader::mitkClassMacro	(	NrrdTbssImageReader	,
		TbssVolSourceType
	)

void mitk::NrrdTbssImageReader::SetFileName ( const char * aFileName )

overridevirtual

Specify the file to load.

Either the FileName or FilePrefix plus FilePattern are used to read.

Implements mitk::FileReader.

Definition at line 223 of file mitkNrrdTbssImageReader.cpp.

void mitk::NrrdTbssImageReader::SetFilePattern ( const char * aFilePattern )

overridevirtual

Specified file pattern for the file(s) to load. The sprintf format used to build filename from FilePrefix and number.

You should specify either a FileName or FilePrefix. Use FilePrefix if the data is stored in multiple files.

Implements mitk::FileReader.

Definition at line 247 of file mitkNrrdTbssImageReader.cpp.

void mitk::NrrdTbssImageReader::SetFilePrefix ( const char * aFilePrefix )

overridevirtual

Specify file prefix for the file(s) to load.

You should specify either a FileName or FilePrefix. Use FilePrefix if the data is stored in multiple files.

Implements mitk::FileReader.

Definition at line 235 of file mitkNrrdTbssImageReader.cpp.

void mitk::NrrdTbssImageReader::Tokenize	(	const std::string &	str,
		std::vector< std::string > &	tokens,
		const std::string &	delimiters = `" "`
	)

inlineprotected

Definition at line 74 of file mitkNrrdTbssImageReader.h.

Member Data Documentation

itk::TimeStamp mitk::NrrdTbssImageReader::m_CacheTime

protected

Definition at line 71 of file mitkNrrdTbssImageReader.h.

std::string mitk::NrrdTbssImageReader::m_FileName

protected

Definition at line 64 of file mitkNrrdTbssImageReader.h.

std::string mitk::NrrdTbssImageReader::m_FilePattern

protected

Definition at line 66 of file mitkNrrdTbssImageReader.h.

std::string mitk::NrrdTbssImageReader::m_FilePrefix

protected

Definition at line 65 of file mitkNrrdTbssImageReader.h.

std::vector< std::pair<std::string, int> > mitk::NrrdTbssImageReader::m_GroupInfo

protected

Definition at line 68 of file mitkNrrdTbssImageReader.h.

OutputType::Pointer mitk::NrrdTbssImageReader::m_OutputCache

protected

Definition at line 70 of file mitkNrrdTbssImageReader.h.

The documentation for this class was generated from the following files:

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

Member Function Documentation

Member Data Documentation