This class performes a b-spline registration between two images. More...

#include <mitkBSplineRegistration.h>

Inheritance diagram for mitk::BSplineRegistration:

Collaboration diagram for mitk::BSplineRegistration:

Public Member Functions
	mitkClassMacro (BSplineRegistration, RegistrationBase)

Pointer	Clone () const

void	SetNumberOfIterations (int iterations)
	Sets the number of iterations which will be performed during the registration process. More...

void	SetSaveResult (bool saveResult)
	Sets whether the result should be saved or not. More...

void	SetResultFileName (const char *resultName)
	Sets the filename for the resulting deformed image. More...

virtual void	GenerateData () override
	Starts the B-Spline registration. More...

void	SetOptimizerParameters (mitk::OptimizerParameters::Pointer optimizerParameters)
	Set the optimizer parameters. More...

virtual void	SetNumberOfGridPoints (int _arg)

virtual void	SetSaveDeformationField (bool _arg)

virtual void	SetUpdateInputImage (bool _arg)

virtual void	SetDeformationFileName (std::string _arg)

virtual void	SetMetric (int _arg)

virtual void	SetMatchHistograms (bool _arg)

Public Member Functions inherited from mitk::RegistrationBase
	mitkClassMacro (RegistrationBase, ImageToImageFilter)

Pointer	Clone () const

virtual void	SetReferenceImage (Image::Pointer fixedImage)
	Sets the reference image (fixed image) for the registration. More...

Public Member Functions inherited from mitk::ImageToImageFilter
virtual std::vector< std::string >	GetClassHierarchy () const override

virtual const char *	GetClassName () const

Pointer	Clone () const

virtual void	SetInput (const InputImageType *image)

virtual void	SetInput (unsigned int, const InputImageType *image)

InputImageType *	GetInput (void)

InputImageType *	GetInput (unsigned int idx)

const InputImageType *	GetInput (void) const

const InputImageType *	GetInput (unsigned int idx) const

Public Member Functions inherited from mitk::ImageSource
Pointer	Clone () const

OutputType *	GetOutput ()
	Get the output data of this image source object. More...

const OutputType *	GetOutput () const

OutputType *	GetOutput (DataObjectPointerArraySizeType idx)

const OutputType *	GetOutput (DataObjectPointerArraySizeType idx) const

virtual itk::DataObject::Pointer	MakeOutput (DataObjectPointerArraySizeType idx) override
	Make a DataObject of the correct type to used as the specified output. More...

virtual itk::DataObject::Pointer	MakeOutput (const DataObjectIdentifierType &name) override

virtual vtkImageData *	GetVtkImageData ()

virtual const vtkImageData *	GetVtkImageData () const

Public Member Functions inherited from mitk::BaseDataSource
OutputType *	GetOutput ()

const OutputType *	GetOutput () const

OutputType *	GetOutput (DataObjectPointerArraySizeType idx)

const OutputType *	GetOutput (DataObjectPointerArraySizeType idx) const

virtual void	GraftOutput (OutputType *output)
	Graft the specified BaseData onto this BaseDataSource's output. More...

virtual void	GraftOutput (const DataObjectIdentifierType &key, OutputType *output)

virtual void	GraftNthOutput (unsigned int idx, OutputType *output)
	Graft the specified base data object onto this BaseDataSource's idx'th output. More...

bool	Updating () const
	Access itk::ProcessObject::m_Updating. More...

Static Public Member Functions
static Pointer	New ()
	Method for creation through the object factory. More...

Static Public Member Functions inherited from mitk::RegistrationBase
static Pointer	New ()
	Method for creation through the object factory. More...

Static Public Member Functions inherited from mitk::ImageToImageFilter
static const char *	GetStaticNameOfClass ()

static Pointer	New ()

Static Public Member Functions inherited from mitk::ImageSource
static const char *	GetStaticNameOfClass ()

static Pointer	New ()
	Method for creation through the object factory. More...

Static Public Member Functions inherited from mitk::BaseDataSource
static const char *	GetStaticNameOfClass ()

Protected Member Functions
	BSplineRegistration ()
	Default constructor. More...

virtual	~BSplineRegistration ()
	Default destructor. More...

template<typename TPixel , unsigned int VImageDimension>
void	GenerateData2 (const itk::Image< TPixel, VImageDimension > *itkImage1)
	Template class to perform the demons registration with any kind of image. Called by GenerateData(). More...

Protected Member Functions inherited from mitk::RegistrationBase
	RegistrationBase ()
	Default constructor. More...

virtual	~RegistrationBase ()
	Default destructor. More...

virtual void	AddStepsToDo (int steps)
	Adds steps to the progress bar, which will be done with AddStepsToDo(int steps) and SetRemainingProgress(int steps) More...

virtual void	SetProgress (const itk::EventObject &)
	Sets one step of progress to the progress bar. More...

virtual void	SetRemainingProgress (int steps)
	Sets the remaining progress to the progress bar. More...

Protected Member Functions inherited from mitk::ImageToImageFilter
	ImageToImageFilter ()

virtual	~ImageToImageFilter ()

virtual void	PrintSelf (std::ostream &os, itk::Indent indent) const override

virtual void	GenerateInputRequestedRegion () override

Protected Member Functions inherited from mitk::ImageSource
	ImageSource ()

virtual	~ImageSource ()

virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, itk::ThreadIdType threadId)
	If an imaging filter can be implemented as a multithreaded algorithm, the filter will provide an implementation of ThreadedGenerateData(). More...

virtual void	PrepareOutputs () override
	This method is intentionally left blank. More...

virtual void	AllocateOutputs ()
	The GenerateData method normally allocates the buffers for all of the outputs of a filter. More...

virtual void	BeforeThreadedGenerateData ()
	If an imaging filter needs to perform processing after the buffer has been allocated but before threads are spawned, the filter can can provide an implementation for BeforeThreadedGenerateData(). More...

virtual void	AfterThreadedGenerateData ()
	If an imaging filter needs to perform processing after all processing threads have completed, the filter can can provide an implementation for AfterThreadedGenerateData(). More...

virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int num, OutputImageRegionType &splitRegion)
	Split the output's RequestedRegion into "num" pieces, returning region "i" as "splitRegion". More...

Protected Member Functions inherited from mitk::BaseDataSource
	BaseDataSource ()

virtual	~BaseDataSource ()

Protected Attributes
int	m_Iterations

const char *	m_ResultName

bool	m_SaveResult

mitk::OptimizerParameters::Pointer	m_OptimizerParameters

int	m_NumberOfGridPoints

bool	m_SaveDeformationField

bool	m_UpdateInputImage

std::string	m_DeformationFileName

bool	m_MatchHistograms

int	m_Metric

RigidRegistrationObserver::Pointer	m_Observer

Protected Attributes inherited from mitk::RegistrationBase
Image::Pointer	m_ReferenceImage

Additional Inherited Members
Public Types inherited from mitk::ImageToImageFilter
typedef ImageToImageFilter	Self

typedef ImageSource	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef Superclass::OutputImageRegionType	OutputImageRegionType

typedef mitk::Image	InputImageType

typedef InputImageType::Pointer	InputImagePointer

typedef InputImageType::ConstPointer	InputImageConstPointer

typedef SlicedData::RegionType	InputImageRegionType

Public Types inherited from mitk::ImageSource
typedef ImageSource	Self

typedef BaseDataSource	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef mitk::Image	OutputImageType
	Some convenient typedefs. More...

typedef OutputImageType	OutputType

typedef OutputImageType::Pointer	OutputImagePointer

typedef SlicedData::RegionType	OutputImageRegionType

Public Types inherited from mitk::BaseDataSource
typedef BaseDataSource	Self

typedef itk::ProcessObject	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef BaseData	OutputType

typedef itk::DataObject::DataObjectIdentifierType	DataObjectIdentifierType

Static Protected Member Functions inherited from mitk::ImageSource
static ITK_THREAD_RETURN_TYPE	ThreaderCallback (void *arg)
	Static function used as a "callback" by the MultiThreader. More...

Static Protected Member Functions inherited from mitk::BaseDataSource
static Pointer	New ()

Detailed Description

This class performes a b-spline registration between two images.

Author: Thomas van Bruggen

Definition at line 37 of file mitkBSplineRegistration.h.

Constructor & Destructor Documentation

mitk::BSplineRegistration::BSplineRegistration ( )

protected

Default constructor.

Definition at line 41 of file mitkBSplineRegistration.cpp.

References m_Observer, and mitk::RigidRegistrationObserver::New().

mitk::BSplineRegistration::~BSplineRegistration ( )

protectedvirtual

Default destructor.

Definition at line 53 of file mitkBSplineRegistration.cpp.

Member Function Documentation

Pointer mitk::BSplineRegistration::Clone ( ) const

virtual void mitk::BSplineRegistration::GenerateData ( )

inlineoverridevirtual

Starts the B-Spline registration.

Reimplemented from mitk::ImageSource.

Definition at line 65 of file mitkBSplineRegistration.h.

References AccessByItk.

template<typename TPixel , unsigned int VImageDimension>

void mitk::BSplineRegistration::GenerateData2 ( const itk::Image< TPixel, VImageDimension > * itkImage1 )

protected

Template class to perform the demons registration with any kind of image. Called by GenerateData().

Definition at line 58 of file mitkBSplineRegistration.cpp.

References mitk::CastToItkImage(), mitk::CastToMitkImage(), mitk::ImageSource::GetOutput(), m_DeformationFileName, m_MatchHistograms, m_Metric, m_NumberOfGridPoints, m_Observer, m_OptimizerParameters, mitk::RegistrationBase::m_ReferenceImage, m_SaveDeformationField, m_UpdateInputImage, MITK_INFO, mitk::New(), and mitk::OptimizerFactory::New().

mitk::BSplineRegistration::mitkClassMacro	(	BSplineRegistration	,
		RegistrationBase
	)

static Pointer mitk::BSplineRegistration::New ( )

static

Method for creation through the object factory.

Referenced by QmitkBSplineRegistrationView::CalculateTransformation().

virtual void mitk::BSplineRegistration::SetDeformationFileName ( std::string _arg )

virtual

virtual void mitk::BSplineRegistration::SetMatchHistograms ( bool _arg )

virtual

virtual void mitk::BSplineRegistration::SetMetric ( int _arg )

virtual

virtual void mitk::BSplineRegistration::SetNumberOfGridPoints ( int _arg )

virtual

void mitk::BSplineRegistration::SetNumberOfIterations ( int iterations )

Sets the number of iterations which will be performed during the registration process.

Definition at line 54 of file mitkBSplineRegistration.cpp.

References m_Iterations.

void mitk::BSplineRegistration::SetOptimizerParameters ( mitk::OptimizerParameters::Pointer optimizerParameters )

inline

Set the optimizer parameters.

Definition at line 77 of file mitkBSplineRegistration.h.

void mitk::BSplineRegistration::SetResultFileName ( const char * resultName )

Sets the filename for the resulting deformed image.

Definition at line 56 of file mitkBSplineRegistration.cpp.

References m_ResultName.

virtual void mitk::BSplineRegistration::SetSaveDeformationField ( bool _arg )

virtual

void mitk::BSplineRegistration::SetSaveResult ( bool saveResult )

Sets whether the result should be saved or not.

Definition at line 55 of file mitkBSplineRegistration.cpp.

References m_SaveResult.

virtual void mitk::BSplineRegistration::SetUpdateInputImage ( bool _arg )

virtual

Member Data Documentation

std::string mitk::BSplineRegistration::m_DeformationFileName

protected

Definition at line 128 of file mitkBSplineRegistration.h.

Referenced by GenerateData2().

int mitk::BSplineRegistration::m_Iterations

protected

Definition at line 118 of file mitkBSplineRegistration.h.

Referenced by SetNumberOfIterations().

bool mitk::BSplineRegistration::m_MatchHistograms

protected

Definition at line 130 of file mitkBSplineRegistration.h.

Referenced by GenerateData2().

int mitk::BSplineRegistration::m_Metric

protected

Definition at line 132 of file mitkBSplineRegistration.h.

Referenced by GenerateData2().

int mitk::BSplineRegistration::m_NumberOfGridPoints

protected

Definition at line 125 of file mitkBSplineRegistration.h.

Referenced by GenerateData2().

RigidRegistrationObserver::Pointer mitk::BSplineRegistration::m_Observer

protected

Definition at line 134 of file mitkBSplineRegistration.h.

Referenced by BSplineRegistration(), and GenerateData2().

mitk::OptimizerParameters::Pointer mitk::BSplineRegistration::m_OptimizerParameters

protected

Definition at line 122 of file mitkBSplineRegistration.h.

Referenced by GenerateData2().

const char* mitk::BSplineRegistration::m_ResultName

protected

Definition at line 119 of file mitkBSplineRegistration.h.

Referenced by SetResultFileName().

bool mitk::BSplineRegistration::m_SaveDeformationField

protected

Definition at line 126 of file mitkBSplineRegistration.h.

Referenced by GenerateData2().

bool mitk::BSplineRegistration::m_SaveResult

protected

Definition at line 120 of file mitkBSplineRegistration.h.

Referenced by SetSaveResult().

bool mitk::BSplineRegistration::m_UpdateInputImage

protected

Definition at line 127 of file mitkBSplineRegistration.h.

Referenced by GenerateData2().

The documentation for this class was generated from the following files:

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation