Reader to read raw image files. More...

#include <mitkRawImageFileReader.h>

Inheritance diagram for mitk::RawImageFileReader:

Collaboration diagram for mitk::RawImageFileReader:

Public Types
enum	IOPixelType { UCHAR, SCHAR, USHORT, SSHORT, UINT, SINT, FLOAT, DOUBLE }

enum	EndianityType { LITTLE, BIG }

Public Types inherited from mitk::ImageSource
typedef ImageSource	Self

typedef BaseDataSource	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef mitk::Image	OutputImageType
	Some convenient typedefs. More...

typedef OutputImageType	OutputType

typedef OutputImageType::Pointer	OutputImagePointer

typedef SlicedData::RegionType	OutputImageRegionType

Public Types inherited from mitk::BaseDataSource
typedef BaseDataSource	Self

typedef itk::ProcessObject	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef BaseData	OutputType

typedef itk::DataObject::DataObjectIdentifierType	DataObjectIdentifierType

Public Types inherited from mitk::FileReader
typedef FileReader	Self

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

Public Member Functions
	mitkClassMacro (RawImageFileReader, FileReader)

Pointer	Clone () const

virtual void	SetFileName (std::string _arg)

virtual void	SetFileName (const char *_arg)
	Specify the file to load. More...

virtual std::string	GetFileName ()

virtual const char *	GetFileName () const

virtual void	SetFilePrefix (std::string _arg)

virtual void	SetFilePrefix (const char *_arg)
	Specify file prefix for the file(s) to load. More...

virtual std::string	GetFilePrefix ()

virtual const char *	GetFilePrefix () const
	Get the specified file prefix for the file(s) to load. More...

virtual void	SetFilePattern (std::string _arg)

virtual void	SetFilePattern (const char *_arg)
	Specified file pattern for the file(s) to load. The sprintf format used to build filename from FilePrefix and number. More...

virtual std::string	GetFilePattern ()

virtual const char *	GetFilePattern () const
	Get the specified file pattern for the file(s) to load. The sprintf format used to build filename from FilePrefix and number. More...

virtual void	SetPixelType (IOPixelType _arg)

virtual void	SetEndianity (EndianityType _arg)

virtual void	SetDimensionality (int _arg)

virtual int	GetDimensionality ()

void	SetDimensions (unsigned int i, unsigned int dim)

unsigned int	GetDimensions (unsigned int i) const

Public Member Functions inherited from mitk::ImageSource
virtual std::vector< std::string >	GetClassHierarchy () const override

virtual const char *	GetClassName () const

Pointer	Clone () const

OutputType *	GetOutput ()
	Get the output data of this image source object. More...

const OutputType *	GetOutput () const

OutputType *	GetOutput (DataObjectPointerArraySizeType idx)

const OutputType *	GetOutput (DataObjectPointerArraySizeType idx) const

virtual itk::DataObject::Pointer	MakeOutput (DataObjectPointerArraySizeType idx) override
	Make a DataObject of the correct type to used as the specified output. More...

virtual itk::DataObject::Pointer	MakeOutput (const DataObjectIdentifierType &name) override

virtual vtkImageData *	GetVtkImageData ()

virtual const vtkImageData *	GetVtkImageData () const

Public Member Functions inherited from mitk::BaseDataSource
OutputType *	GetOutput ()

const OutputType *	GetOutput () const

OutputType *	GetOutput (DataObjectPointerArraySizeType idx)

const OutputType *	GetOutput (DataObjectPointerArraySizeType idx) const

virtual void	GraftOutput (OutputType *output)
	Graft the specified BaseData onto this BaseDataSource's output. More...

virtual void	GraftOutput (const DataObjectIdentifierType &key, OutputType *output)

virtual void	GraftNthOutput (unsigned int idx, OutputType *output)
	Graft the specified base data object onto this BaseDataSource's idx'th output. More...

bool	Updating () const
	Access itk::ProcessObject::m_Updating. More...

Public Member Functions inherited from mitk::FileReader
virtual std::vector< std::string >	GetClassHierarchy () const

	itkTypeMacroNoParent (FileReader) virtual const char *GetFileName() const =0
	Get the specified the file to load. More...

virtual bool	CanReadFromMemory ()
	Specifies, whether the file reader also can read a file from a memory buffer. More...

virtual void	SetReadFromMemory (bool read)
	Set/Get functions to advise the file reader to use a memory array for reading a file. More...

virtual bool	GetReadFromMemory ()

virtual void	SetMemoryBuffer (const char *dataArray, unsigned int size)
	To be used along with a call of SetReadFromMemory(true). This sets the memory buffer and the size from which the reader will read. More...

Static Public Member Functions
static Pointer	New ()

static bool	CanReadFile (const std::string filename, const std::string filePrefix, const std::string filePattern)

Static Public Member Functions inherited from mitk::ImageSource
static const char *	GetStaticNameOfClass ()

static Pointer	New ()
	Method for creation through the object factory. More...

Static Public Member Functions inherited from mitk::BaseDataSource
static const char *	GetStaticNameOfClass ()

Static Public Member Functions inherited from mitk::FileReader
static const char *	GetStaticNameOfClass ()

Protected Member Functions
	RawImageFileReader ()

	~RawImageFileReader ()

virtual void	GenerateData () override
	A version of GenerateData() specific for image processing filters. More...

template<typename TPixel , unsigned int VImageDimensions>
void	TypedGenerateData ()

Protected Member Functions inherited from mitk::ImageSource
	ImageSource ()

virtual	~ImageSource ()

virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, itk::ThreadIdType threadId)
	If an imaging filter can be implemented as a multithreaded algorithm, the filter will provide an implementation of ThreadedGenerateData(). More...

virtual void	PrepareOutputs () override
	This method is intentionally left blank. More...

virtual void	AllocateOutputs ()
	The GenerateData method normally allocates the buffers for all of the outputs of a filter. More...

virtual void	BeforeThreadedGenerateData ()
	If an imaging filter needs to perform processing after the buffer has been allocated but before threads are spawned, the filter can can provide an implementation for BeforeThreadedGenerateData(). More...

virtual void	AfterThreadedGenerateData ()
	If an imaging filter needs to perform processing after all processing threads have completed, the filter can can provide an implementation for AfterThreadedGenerateData(). More...

virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int num, OutputImageRegionType &splitRegion)
	Split the output's RequestedRegion into "num" pieces, returning region "i" as "splitRegion". More...

Protected Member Functions inherited from mitk::BaseDataSource
	BaseDataSource ()

virtual	~BaseDataSource ()

Protected Member Functions inherited from mitk::FileReader
	FileReader ()

virtual	~FileReader ()

Protected Attributes
std::string	m_FileName

std::string	m_FilePrefix

std::string	m_FilePattern

IOPixelType	m_PixelType

int	m_Dimensionality

EndianityType	m_Endianity

itk::Vector< int, 3 >	m_Dimensions

Protected Attributes inherited from mitk::FileReader
bool	m_CanReadFromMemory

bool	m_ReadFromMemory

const char *	m_MemoryBuffer

unsigned int	m_MemorySize

Additional Inherited Members
Static Protected Member Functions inherited from mitk::ImageSource
static ITK_THREAD_RETURN_TYPE	ThreaderCallback (void *arg)
	Static function used as a "callback" by the MultiThreader. More...

Static Protected Member Functions inherited from mitk::BaseDataSource
static Pointer	New ()

Detailed Description

Reader to read raw image files.

The user must set the dimensionality, the dimensions and the pixel type. If they are incorrect, the image will not be opened or the visualization will be incorrect.

Definition at line 32 of file LegacyIO/mitkRawImageFileReader.h.

Member Enumeration Documentation

enum mitk::RawImageFileReader::EndianityType

Endianity of bits.

Enumerator
LITTLE
BIG

Definition at line 60 of file LegacyIO/mitkRawImageFileReader.h.

enum mitk::RawImageFileReader::IOPixelType

Supported pixel types.

Enumerator
UCHAR
SCHAR
USHORT
SSHORT
UINT
SINT
FLOAT
DOUBLE

Definition at line 56 of file LegacyIO/mitkRawImageFileReader.h.

Constructor & Destructor Documentation

mitk::RawImageFileReader::RawImageFileReader ( )

protected

Definition at line 24 of file LegacyIO/mitkRawImageFileReader.cpp.

mitk::RawImageFileReader::~RawImageFileReader ( )

protected

Definition at line 28 of file LegacyIO/mitkRawImageFileReader.cpp.

Member Function Documentation

bool mitk::RawImageFileReader::CanReadFile	(	const std::string	filename,
		const std::string	filePrefix,
		const std::string	filePattern
	)

static

Definition at line 49 of file LegacyIO/mitkRawImageFileReader.cpp.

Pointer mitk::RawImageFileReader::Clone ( ) const

void mitk::RawImageFileReader::GenerateData ( )

overrideprotectedvirtual

A version of GenerateData() specific for image processing filters.

This implementation will split the processing across multiple threads. The buffer is allocated by this method. Then the BeforeThreadedGenerateData() method is called (if provided). Then, a series of threads are spawned each calling ThreadedGenerateData(). After all the threads have completed processing, the AfterThreadedGenerateData() method is called (if provided). If an image processing filter cannot be threaded, the filter should provide an implementation of GenerateData(). That implementation is responsible for allocating the output buffer. If a filter an be threaded, it should NOT provide a GenerateData() method but should provide a ThreadedGenerateData() instead.

See also: ThreadedGenerateData()

Reimplemented from mitk::ImageSource.

Definition at line 64 of file LegacyIO/mitkRawImageFileReader.cpp.

References MITK_INFO.

virtual int mitk::RawImageFileReader::GetDimensionality ( )

virtual

unsigned int mitk::RawImageFileReader::GetDimensions ( unsigned int i ) const

Definition at line 41 of file LegacyIO/mitkRawImageFileReader.cpp.

virtual std::string mitk::RawImageFileReader::GetFileName ( )

virtual

virtual const char* mitk::RawImageFileReader::GetFileName ( ) const

virtual

virtual std::string mitk::RawImageFileReader::GetFilePattern ( )

virtual

virtual const char* mitk::RawImageFileReader::GetFilePattern ( ) const

virtual

Get the specified file pattern for the file(s) to load. The sprintf format used to build filename from FilePrefix and number.

You should specify either a FileName or FilePrefix. Use FilePrefix if the data is stored in multiple files.

Implements mitk::FileReader.

virtual std::string mitk::RawImageFileReader::GetFilePrefix ( )

virtual

virtual const char* mitk::RawImageFileReader::GetFilePrefix ( ) const

virtual

Get the specified file prefix for the file(s) to load.

You should specify either a FileName or FilePrefix. Use FilePrefix if the data is stored in multiple files.

Implements mitk::FileReader.

mitk::RawImageFileReader::mitkClassMacro	(	RawImageFileReader	,
		FileReader
	)

static Pointer mitk::RawImageFileReader::New ( )

static

Method for creation through the object factory.

virtual void mitk::RawImageFileReader::SetDimensionality ( int _arg )

virtual

void mitk::RawImageFileReader::SetDimensions	(	unsigned int	i,
		unsigned int	dim
	)

Image dimensions must be set one by one, starting from dimension 0.

Definition at line 32 of file LegacyIO/mitkRawImageFileReader.cpp.

virtual void mitk::RawImageFileReader::SetEndianity ( EndianityType _arg )

virtual

virtual void mitk::RawImageFileReader::SetFileName ( std::string _arg )

virtual

virtual void mitk::RawImageFileReader::SetFileName ( const char * aFileName )

virtual

Specify the file to load.

Either the FileName or FilePrefix plus FilePattern are used to read.

Implements mitk::FileReader.

virtual void mitk::RawImageFileReader::SetFilePattern ( std::string _arg )

virtual

virtual void mitk::RawImageFileReader::SetFilePattern ( const char * aFilePattern )

virtual

Specified file pattern for the file(s) to load. The sprintf format used to build filename from FilePrefix and number.

You should specify either a FileName or FilePrefix. Use FilePrefix if the data is stored in multiple files.

Implements mitk::FileReader.

virtual void mitk::RawImageFileReader::SetFilePrefix ( std::string _arg )

virtual

virtual void mitk::RawImageFileReader::SetFilePrefix ( const char * aFilePrefix )

virtual

Specify file prefix for the file(s) to load.

You should specify either a FileName or FilePrefix. Use FilePrefix if the data is stored in multiple files.

Implements mitk::FileReader.

virtual void mitk::RawImageFileReader::SetPixelType ( IOPixelType _arg )

virtual

template<typename TPixel , unsigned int VImageDimensions>

void mitk::RawImageFileReader::TypedGenerateData ( )

protected

Definition at line 141 of file LegacyIO/mitkRawImageFileReader.cpp.

References mitk::CastToMitkImage(), MITK_ERROR, MITK_INFO, mitk::New(), and mitk::Image::New().

Member Data Documentation

int mitk::RawImageFileReader::m_Dimensionality

protected

Dimensionality of file to be read. Can be 2 or 3.

Definition at line 96 of file LegacyIO/mitkRawImageFileReader.h.

itk::Vector<int, 3> mitk::RawImageFileReader::m_Dimensions

protected

Vector containing dimensions of image to be read.

Definition at line 102 of file LegacyIO/mitkRawImageFileReader.h.

EndianityType mitk::RawImageFileReader::m_Endianity

protected

Endianity. Must be set to LITTLE or BIG. Default is BIG.

Definition at line 99 of file LegacyIO/mitkRawImageFileReader.h.

std::string mitk::RawImageFileReader::m_FileName

protected

Name of file to be read.

Definition at line 84 of file LegacyIO/mitkRawImageFileReader.h.

std::string mitk::RawImageFileReader::m_FilePattern

protected

File pattern.

Definition at line 90 of file LegacyIO/mitkRawImageFileReader.h.

std::string mitk::RawImageFileReader::m_FilePrefix

protected

File prefix.

Definition at line 87 of file LegacyIO/mitkRawImageFileReader.h.

IOPixelType mitk::RawImageFileReader::m_PixelType

protected

Pixel type of image to be read. Must be of type IOPixelType.

Definition at line 93 of file LegacyIO/mitkRawImageFileReader.h.

The documentation for this class was generated from the following files:

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Member Enumeration Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation