Main class for the rigid registration pipeline. More...

#include <mitkPyramidalRegistrationMethod.h>

Inheritance diagram for mitk::PyramidalRegistrationMethod:

Collaboration diagram for mitk::PyramidalRegistrationMethod:

Public Types
typedef itk::SingleValuedNonLinearOptimizer	OptimizerType

typedef itk::ImageMaskSpatialObject< 3 >	MaskType

Public Types inherited from mitk::ImageToImageFilter
typedef ImageToImageFilter	Self

typedef ImageSource	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef Superclass::OutputImageRegionType	OutputImageRegionType

typedef mitk::Image	InputImageType

typedef InputImageType::Pointer	InputImagePointer

typedef InputImageType::ConstPointer	InputImageConstPointer

typedef SlicedData::RegionType	InputImageRegionType

Public Types inherited from mitk::ImageSource
typedef ImageSource	Self

typedef BaseDataSource	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef mitk::Image	OutputImageType
	Some convenient typedefs. More...

typedef OutputImageType	OutputType

typedef OutputImageType::Pointer	OutputImagePointer

typedef SlicedData::RegionType	OutputImageRegionType

Public Types inherited from mitk::BaseDataSource
typedef BaseDataSource	Self

typedef itk::ProcessObject	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef BaseData	OutputType

typedef itk::DataObject::DataObjectIdentifierType	DataObjectIdentifierType

Public Member Functions
	mitkClassMacro (PyramidalRegistrationMethod, ImageToImageFilter)

Pointer	Clone () const

void	SetObserver (RigidRegistrationObserver::Pointer observer)

void	SetInterpolator (int interpolator)

virtual void	GenerateData () override
	A version of GenerateData() specific for image processing filters. More...

virtual void	SetReferenceImage (Image::Pointer fixedImage)

virtual void	SetFixedMask (Image::Pointer fixedMask)

virtual void	SetMovingMask (Image::Pointer movingMask)

void	SetOptimizerParameters (OptimizerParameters::Pointer optimizerParameters)

OptimizerParameters::Pointer	GetOptimizerParameters ()

void	SetTransformParameters (TransformParameters::Pointer transformParameters)

TransformParameters::Pointer	GetTransformParameters ()

void	SetMetricParameters (MetricParameters::Pointer metricParameters)

MetricParameters::Pointer	GetMetricParameters ()

void	SetPresets (std::vector< std::string > presets)

virtual void	SetFixedSchedule (itk::Array2D< unsigned int > _arg)

virtual void	SetMovingSchedule (itk::Array2D< unsigned int > _arg)

virtual void	SetMatchHistograms (bool _arg)

virtual mitk::RigidRegistrationPreset *	GetPreset ()

virtual void	SetBlurFixedImage (bool _arg)

virtual void	SetBlurMovingImage (bool _arg)

Public Member Functions inherited from mitk::ImageToImageFilter
virtual std::vector< std::string >	GetClassHierarchy () const override

virtual const char *	GetClassName () const

Pointer	Clone () const

virtual void	SetInput (const InputImageType *image)

virtual void	SetInput (unsigned int, const InputImageType *image)

InputImageType *	GetInput (void)

InputImageType *	GetInput (unsigned int idx)

const InputImageType *	GetInput (void) const

const InputImageType *	GetInput (unsigned int idx) const

Public Member Functions inherited from mitk::ImageSource
Pointer	Clone () const

OutputType *	GetOutput ()
	Get the output data of this image source object. More...

const OutputType *	GetOutput () const

OutputType *	GetOutput (DataObjectPointerArraySizeType idx)

const OutputType *	GetOutput (DataObjectPointerArraySizeType idx) const

virtual itk::DataObject::Pointer	MakeOutput (DataObjectPointerArraySizeType idx) override
	Make a DataObject of the correct type to used as the specified output. More...

virtual itk::DataObject::Pointer	MakeOutput (const DataObjectIdentifierType &name) override

virtual vtkImageData *	GetVtkImageData ()

virtual const vtkImageData *	GetVtkImageData () const

Public Member Functions inherited from mitk::BaseDataSource
OutputType *	GetOutput ()

const OutputType *	GetOutput () const

OutputType *	GetOutput (DataObjectPointerArraySizeType idx)

const OutputType *	GetOutput (DataObjectPointerArraySizeType idx) const

virtual void	GraftOutput (OutputType *output)
	Graft the specified BaseData onto this BaseDataSource's output. More...

virtual void	GraftOutput (const DataObjectIdentifierType &key, OutputType *output)

virtual void	GraftNthOutput (unsigned int idx, OutputType *output)
	Graft the specified base data object onto this BaseDataSource's idx'th output. More...

bool	Updating () const
	Access itk::ProcessObject::m_Updating. More...

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from mitk::ImageToImageFilter
static const char *	GetStaticNameOfClass ()

static Pointer	New ()

Static Public Member Functions inherited from mitk::ImageSource
static const char *	GetStaticNameOfClass ()

static Pointer	New ()
	Method for creation through the object factory. More...

Static Public Member Functions inherited from mitk::BaseDataSource
static const char *	GetStaticNameOfClass ()

Static Public Attributes
static const int	LINEARINTERPOLATOR

static const int	NEARESTNEIGHBORINTERPOLATOR

Protected Member Functions
	PyramidalRegistrationMethod ()

virtual	~PyramidalRegistrationMethod ()

void	GenerateOutputInformation () override

Protected Member Functions inherited from mitk::ImageToImageFilter
	ImageToImageFilter ()

virtual	~ImageToImageFilter ()

virtual void	PrintSelf (std::ostream &os, itk::Indent indent) const override

virtual void	GenerateInputRequestedRegion () override

Protected Member Functions inherited from mitk::ImageSource
	ImageSource ()

virtual	~ImageSource ()

virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, itk::ThreadIdType threadId)
	If an imaging filter can be implemented as a multithreaded algorithm, the filter will provide an implementation of ThreadedGenerateData(). More...

virtual void	PrepareOutputs () override
	This method is intentionally left blank. More...

virtual void	AllocateOutputs ()
	The GenerateData method normally allocates the buffers for all of the outputs of a filter. More...

virtual void	BeforeThreadedGenerateData ()
	If an imaging filter needs to perform processing after the buffer has been allocated but before threads are spawned, the filter can can provide an implementation for BeforeThreadedGenerateData(). More...

virtual void	AfterThreadedGenerateData ()
	If an imaging filter needs to perform processing after all processing threads have completed, the filter can can provide an implementation for AfterThreadedGenerateData(). More...

virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int num, OutputImageRegionType &splitRegion)
	Split the output's RequestedRegion into "num" pieces, returning region "i" as "splitRegion". More...

Protected Member Functions inherited from mitk::BaseDataSource
	BaseDataSource ()

virtual	~BaseDataSource ()

Protected Attributes
RigidRegistrationObserver::Pointer	m_Observer

int	m_Interpolator

Image::Pointer	m_ReferenceImage

Image::Pointer	m_FixedMask

Image::Pointer	m_MovingMask

Additional Inherited Members
Static Protected Member Functions inherited from mitk::ImageSource
static ITK_THREAD_RETURN_TYPE	ThreaderCallback (void *arg)
	Static function used as a "callback" by the MultiThreader. More...

Static Protected Member Functions inherited from mitk::BaseDataSource
static Pointer	New ()

Detailed Description

Main class for the rigid registration pipeline.

Author: Thomas van Bruggen

Definition at line 46 of file mitkPyramidalRegistrationMethod.h.

Member Typedef Documentation

typedef itk::ImageMaskSpatialObject<3> mitk::PyramidalRegistrationMethod::MaskType

Definition at line 50 of file mitkPyramidalRegistrationMethod.h.

typedef itk::SingleValuedNonLinearOptimizer mitk::PyramidalRegistrationMethod::OptimizerType

Definition at line 49 of file mitkPyramidalRegistrationMethod.h.

Constructor & Destructor Documentation

mitk::PyramidalRegistrationMethod::PyramidalRegistrationMethod ( )

protected

Definition at line 22 of file mitkPyramidalRegistrationMethod.cpp.

References mitk::RigidRegistrationPreset::LoadPreset(), m_FixedMask, m_MovingMask, m_ReferenceImage, mitk::OptimizerParameters::New(), mitk::MetricParameters::New(), mitk::TransformParameters::New(), and mitk::Image::New().

mitk::PyramidalRegistrationMethod::~PyramidalRegistrationMethod ( )

protectedvirtual

Definition at line 46 of file mitkPyramidalRegistrationMethod.cpp.

Member Function Documentation

Pointer mitk::PyramidalRegistrationMethod::Clone ( ) const

void mitk::PyramidalRegistrationMethod::GenerateData ( )

overridevirtual

A version of GenerateData() specific for image processing filters.

This implementation will split the processing across multiple threads. The buffer is allocated by this method. Then the BeforeThreadedGenerateData() method is called (if provided). Then, a series of threads are spawned each calling ThreadedGenerateData(). After all the threads have completed processing, the AfterThreadedGenerateData() method is called (if provided). If an image processing filter cannot be threaded, the filter should provide an implementation of GenerateData(). That implementation is responsible for allocating the output buffer. If a filter an be threaded, it should NOT provide a GenerateData() method but should provide a ThreadedGenerateData() instead.

See also: ThreadedGenerateData()

Reimplemented from mitk::ImageSource.

Definition at line 47 of file mitkPyramidalRegistrationMethod.cpp.

References mitk::ImageToImageFilter::GetInput(), and PyramidalRegistrationMethodAccessFunctor.

void mitk::PyramidalRegistrationMethod::GenerateOutputInformation ( void )

inlineoverrideprotected

Definition at line 105 of file mitkPyramidalRegistrationMethod.h.

MetricParameters::Pointer mitk::PyramidalRegistrationMethod::GetMetricParameters ( )

inline

Definition at line 84 of file mitkPyramidalRegistrationMethod.h.

OptimizerParameters::Pointer mitk::PyramidalRegistrationMethod::GetOptimizerParameters ( )

inline

Definition at line 76 of file mitkPyramidalRegistrationMethod.h.

virtual mitk::RigidRegistrationPreset* mitk::PyramidalRegistrationMethod::GetPreset ( )

virtual

TransformParameters::Pointer mitk::PyramidalRegistrationMethod::GetTransformParameters ( )

inline

Definition at line 82 of file mitkPyramidalRegistrationMethod.h.

mitk::PyramidalRegistrationMethod::mitkClassMacro	(	PyramidalRegistrationMethod	,
		ImageToImageFilter
	)

static Pointer mitk::PyramidalRegistrationMethod::New ( )

static

virtual void mitk::PyramidalRegistrationMethod::SetBlurFixedImage ( bool _arg )

virtual

virtual void mitk::PyramidalRegistrationMethod::SetBlurMovingImage ( bool _arg )

virtual

void mitk::PyramidalRegistrationMethod::SetFixedMask ( Image::Pointer fixedMask )

virtual

Definition at line 163 of file mitkPyramidalRegistrationMethod.cpp.

References m_FixedMask.

virtual void mitk::PyramidalRegistrationMethod::SetFixedSchedule ( itk::Array2D< unsigned int > _arg )

virtual

void mitk::PyramidalRegistrationMethod::SetInterpolator ( int interpolator )

Definition at line 56 of file mitkPyramidalRegistrationMethod.cpp.

References m_Interpolator.

virtual void mitk::PyramidalRegistrationMethod::SetMatchHistograms ( bool _arg )

virtual

void mitk::PyramidalRegistrationMethod::SetMetricParameters ( MetricParameters::Pointer metricParameters )

inline

Definition at line 83 of file mitkPyramidalRegistrationMethod.h.

void mitk::PyramidalRegistrationMethod::SetMovingMask ( Image::Pointer movingMask )

virtual

Definition at line 156 of file mitkPyramidalRegistrationMethod.cpp.

References m_MovingMask.

virtual void mitk::PyramidalRegistrationMethod::SetMovingSchedule ( itk::Array2D< unsigned int > _arg )

virtual

void mitk::PyramidalRegistrationMethod::SetObserver ( RigidRegistrationObserver::Pointer observer )

Definition at line 55 of file mitkPyramidalRegistrationMethod.cpp.

References m_Observer.

void mitk::PyramidalRegistrationMethod::SetOptimizerParameters ( OptimizerParameters::Pointer optimizerParameters )

inline

Definition at line 71 of file mitkPyramidalRegistrationMethod.h.

void mitk::PyramidalRegistrationMethod::SetPresets ( std::vector< std::string > presets )

inline

Definition at line 85 of file mitkPyramidalRegistrationMethod.h.

void mitk::PyramidalRegistrationMethod::SetReferenceImage ( Image::Pointer fixedImage )

virtual

Definition at line 57 of file mitkPyramidalRegistrationMethod.cpp.

References m_ReferenceImage.

void mitk::PyramidalRegistrationMethod::SetTransformParameters ( TransformParameters::Pointer transformParameters )

inline

Definition at line 77 of file mitkPyramidalRegistrationMethod.h.

Member Data Documentation

const int mitk::PyramidalRegistrationMethod::LINEARINTERPOLATOR

static

Definition at line 56 of file mitkPyramidalRegistrationMethod.h.

Image::Pointer mitk::PyramidalRegistrationMethod::m_FixedMask

protected

Definition at line 102 of file mitkPyramidalRegistrationMethod.h.

Referenced by PyramidalRegistrationMethod(), and SetFixedMask().

int mitk::PyramidalRegistrationMethod::m_Interpolator

protected

Definition at line 100 of file mitkPyramidalRegistrationMethod.h.

Referenced by SetInterpolator().

Image::Pointer mitk::PyramidalRegistrationMethod::m_MovingMask

protected

Definition at line 103 of file mitkPyramidalRegistrationMethod.h.

Referenced by PyramidalRegistrationMethod(), and SetMovingMask().

RigidRegistrationObserver::Pointer mitk::PyramidalRegistrationMethod::m_Observer

protected

Definition at line 99 of file mitkPyramidalRegistrationMethod.h.

Referenced by SetObserver().

Image::Pointer mitk::PyramidalRegistrationMethod::m_ReferenceImage

protected

Definition at line 101 of file mitkPyramidalRegistrationMethod.h.

Referenced by PyramidalRegistrationMethod(), and SetReferenceImage().

const int mitk::PyramidalRegistrationMethod::NEARESTNEIGHBORINTERPOLATOR

static

Definition at line 57 of file mitkPyramidalRegistrationMethod.h.

The documentation for this class was generated from the following files:

Public Types

Public Member Functions

Static Public Member Functions

Static Public Attributes

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation