Calculates some gray value statistics for segmentations. More...

#include <mitkCalculateGrayValueStatisticsTool.h>

Inheritance diagram for mitk::CalculateGrayValueStatisticsTool:

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Collaboration diagram for mitk::CalculateGrayValueStatisticsTool:

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Public Types
typedef itk::Statistics::Histogram< double >	HistogramType

typedef HistogramType::MeasurementType	HistogramMeasurementType

Public Types inherited from mitk::Tool
typedef mitk::Label::PixelType	DefaultSegmentationDataType

Public Types inherited from mitk::EventStateMachine
typedef EventStateMachine	Self

typedef InteractionEventHandler	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef std::map< std::string, TActionFunctor * >	ActionFunctionsMapType

typedef itk::SmartPointer< StateMachineState >	StateMachineStateType

Public Types inherited from mitk::InteractionEventHandler
typedef InteractionEventHandler	Self

typedef itk::Object	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

Public Member Functions
	mitkClassMacro (CalculateGrayValueStatisticsTool, SegmentationsProcessingTool)

Pointer	Clone () const

const char **	GetXPM () const override
	Returns an icon in the XPM format. More...

const char *	GetName () const override
	Returns the name of this tool. Make it short! More...

virtual std::string	GetReport () const

HistogramType::ConstPointer	GetHistogram ()

Public Member Functions inherited from mitk::SegmentationsProcessingTool
	mitkClassMacro (SegmentationsProcessingTool, Tool)

Public Member Functions inherited from mitk::Tool
	mitkClassMacro (Tool, EventStateMachine)

virtual std::string	GetIconPath () const
	Returns the path of an icon. More...

virtual us::ModuleResource	GetCursorIconResource () const
	Returns the path of a cursor icon. More...

virtual us::ModuleResource	GetIconResource () const
	Returns the tool button icon of the tool wrapped by a usModuleResource. More...

virtual void	InitializeStateMachine ()

virtual itk::Object::Pointer	GetGUI (const std::string &toolkitPrefix, const std::string &toolkitPostfix)
	Interface for GUI creation. More...

virtual NodePredicateBase::ConstPointer	GetReferenceDataPreference () const

virtual NodePredicateBase::ConstPointer	GetWorkingDataPreference () const

DataNode::Pointer	CreateEmptySegmentationNode (const Image *original, const std::string &organName, const mitk::Color &color)

DataNode::Pointer	CreateSegmentationNode (Image *image, const std::string &organName, const mitk::Color &color)

virtual bool	CanHandle (BaseData *referenceData) const

Public Member Functions inherited from mitk::EventStateMachine
virtual std::vector< std::string >	GetClassHierarchy () const override

virtual const char *	GetClassName () const

bool	LoadStateMachine (const std::string &filename, const us::Module *module=nullptr)
	Loads XML resource. More...

bool	HandleEvent (InteractionEvent event, DataNode dataNode)

void	EnableUndo (bool enable)
	Enables or disabled Undo. More...

void	EnableInteraction (bool enable)
	Enables/disables the state machine. In un-enabled state it won't react to any events. More...

Public Member Functions inherited from mitk::InteractionEventHandler
bool	SetEventConfig (const std::string &filename, const us::Module *module=nullptr)
	Loads a configuration from an XML resource. More...

bool	SetEventConfig (const EventConfig &config)
	Loads a configuration from an EventConfig object. More...

EventConfig	GetEventConfig () const
	Returns the current configuration. More...

bool	AddEventConfig (const std::string &filename, const us::Module *module=nullptr)
	This method extends the configuration. More...

bool	AddEventConfig (const EventConfig &config)
	This method extends the configuration. The configuration from the EventConfig object is loaded and only the ones conflicting are replaced by the new one. This way several configurations can be combined. More...

Public Member Functions inherited from mitk::InteractionEventObserver
	InteractionEventObserver ()

virtual	~InteractionEventObserver ()

void	Disable ()

void	Enable ()

bool	IsEnabled () const

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from mitk::EventStateMachine
static const char *	GetStaticNameOfClass ()

Static Public Member Functions inherited from mitk::InteractionEventHandler
static const char *	GetStaticNameOfClass ()

Public Attributes
Message	StatisticsCompleted

HistogramType::Pointer	m_ITKHistogram

Public Attributes inherited from mitk::Tool
Message	GUIProcessEventsMessage
	To let GUI process new events (e.g. qApp->processEvents() ) More...

Message1< std::string >	ErrorMessage
	To send error messages (to be shown by some GUI) More...

Message1< bool >	CurrentlyBusy
	To send whether the tool is busy (to be shown by some GUI) More...

Message1< std::string >	GeneralMessage
	To send general messages (to be shown by some GUI) More...

Protected Member Functions
	CalculateGrayValueStatisticsTool ()

	~CalculateGrayValueStatisticsTool () override

void	StartProcessingAllData () override
	Subclasses should override this method. More...

bool	ProcessOneWorkingData (DataNode *node) override
	Subclasses should override this method. More...

void	FinishProcessingAllData () override
	Subclasses should override this method. More...

std::string	GetErrorMessage () override
	Describes the error (if one occurred during processing). More...

template<typename TPixel , unsigned int VImageDimension>
void	CalculateMinMax (itk::Image< TPixel, VImageDimension > referenceImage, Image segmentation, TPixel &minimum, TPixel &maximum)

template<typename TPixel , unsigned int VImageDimension>
void	ITKHistogramming (itk::Image< TPixel, VImageDimension > referenceImage, Image segmentation, std::stringstream &report)

Protected Member Functions inherited from mitk::SegmentationsProcessingTool
	SegmentationsProcessingTool ()

	~SegmentationsProcessingTool () override

const char *	GetGroup () const override
	Name of a group. More...

void	Activated () override
	Called when the tool gets activated. More...

void	Deactivated () override
	Called when the tool gets deactivated. More...

virtual void	ProcessAllObjects ()
	Loop over all working data items. More...

virtual void	SendErrorMessageIfAny ()
	Sends an error message if there was an error during processing. More...

Protected Member Functions inherited from mitk::Tool
virtual void	SetToolManager (ToolManager *)

void	ConnectActionsAndFunctions () override

	Tool ()

	Tool (const char , const us::Module interactorModule=nullptr)

	~Tool () override

void	Notify (InteractionEvent *interactionEvent, bool isHandled) override

bool	FilterEvents (InteractionEvent , DataNode ) override

Protected Member Functions inherited from mitk::EventStateMachine
	EventStateMachine ()

	~EventStateMachine () override

void	AddActionFunction (const std::string &action, TActionFunctor *functor)

void	AddActionFunction (const std::string &action, const ActionFunctionDelegate &delegate)

void	AddConditionFunction (const std::string &condition, const ConditionFunctionDelegate &delegate)

StateMachineState *	GetCurrentState () const

void	ResetToStartState ()
	ResetToStartState Reset state machine to it initial starting state. More...

virtual bool	CheckCondition (const StateMachineCondition &condition, const InteractionEvent *interactionEvent)

virtual void	ExecuteAction (StateMachineAction action, InteractionEvent interactionEvent)

void	SetMouseCursor (const char *xpm[], int hotspotX, int hotspotY)
	Sets the specified mouse cursor. More...

void	ResetMouseCursor ()
	Resets the mouse cursor (if modified by the SlicesCoordinator) to its original state. More...

StateMachineTransition *	GetExecutableTransition (InteractionEvent *event)
	Returns the executable transition for the given event. More...

Protected Member Functions inherited from mitk::InteractionEventHandler
	InteractionEventHandler ()

	~InteractionEventHandler () override

PropertyList::Pointer	GetAttributes () const

std::string	MapToEventVariant (InteractionEvent *interactionEvent)

virtual void	ConfigurationChanged ()

Protected Attributes
std::stringstream	m_CompleteReport

Protected Attributes inherited from mitk::SegmentationsProcessingTool
std::string	m_FailedNodes

Protected Attributes inherited from mitk::Tool
std::string	m_EventConfig
	Let subclasses change their event configuration. More...

ToolManager *	m_ToolManager

Protected Attributes inherited from mitk::EventStateMachine
bool	m_IsActive

UndoController *	m_UndoController

bool	m_UndoEnabled

Additional Inherited Members
Protected Types inherited from mitk::EventStateMachine
typedef MessageAbstractDelegate2< StateMachineAction , InteractionEvent , void >	ActionFunctionDelegate

typedef MessageAbstractDelegate1< const InteractionEvent *, bool >	ConditionFunctionDelegate

Detailed Description

Calculates some gray value statistics for segmentations.

See also: mitk::Tool; QmitkInteractiveSegmentation

Last contributor: $Author$

Definition at line 38 of file mitkCalculateGrayValueStatisticsTool.h.

Member Typedef Documentation

◆ HistogramMeasurementType

typedef HistogramType::MeasurementType mitk::CalculateGrayValueStatisticsTool::HistogramMeasurementType

Definition at line 61 of file mitkCalculateGrayValueStatisticsTool.h.

◆ HistogramType

typedef itk::Statistics::Histogram<double> mitk::CalculateGrayValueStatisticsTool::HistogramType

Definition at line 56 of file mitkCalculateGrayValueStatisticsTool.h.

Constructor & Destructor Documentation

◆ CalculateGrayValueStatisticsTool()

mitk::CalculateGrayValueStatisticsTool::CalculateGrayValueStatisticsTool ( )

protected

Definition at line 33 of file mitkCalculateGrayValueStatisticsTool.cpp.

◆ ~CalculateGrayValueStatisticsTool()

mitk::CalculateGrayValueStatisticsTool::~CalculateGrayValueStatisticsTool ( )

overrideprotected

Definition at line 37 of file mitkCalculateGrayValueStatisticsTool.cpp.

Member Function Documentation

◆ CalculateMinMax()

template<typename TPixel , unsigned int VImageDimension>

void mitk::CalculateGrayValueStatisticsTool::CalculateMinMax	(	itk::Image< TPixel, VImageDimension > *	referenceImage,
		Image *	segmentation,
		TPixel &	minimum,
		TPixel &	maximum
	)

protected

Calculates the minimum and maximum of the pixelvalues. They have to be known to initialize the histogram.

Definition at line 141 of file mitkCalculateGrayValueStatisticsTool.cpp.

References mitk::CastToItkImage(), max(), min(), and ROUND_P.

◆ Clone()

Pointer mitk::CalculateGrayValueStatisticsTool::Clone ( ) const

◆ FinishProcessingAllData()

void mitk::CalculateGrayValueStatisticsTool::FinishProcessingAllData ( )

overrideprotectedvirtual

Subclasses should override this method.

See also: ProcessAllObjects

Reimplemented from mitk::SegmentationsProcessingTool.

Definition at line 129 of file mitkCalculateGrayValueStatisticsTool.cpp.

References mitk::SegmentationsProcessingTool::FinishProcessingAllData().

◆ GetErrorMessage()

std::string mitk::CalculateGrayValueStatisticsTool::GetErrorMessage ( )

overrideprotectedvirtual

Describes the error (if one occurred during processing).

Reimplemented from mitk::SegmentationsProcessingTool.

Definition at line 51 of file mitkCalculateGrayValueStatisticsTool.cpp.

◆ GetHistogram()

mitk::CalculateGrayValueStatisticsTool::HistogramType::ConstPointer mitk::CalculateGrayValueStatisticsTool::GetHistogram ( )

Definition at line 329 of file mitkCalculateGrayValueStatisticsTool.cpp.

◆ GetName()

const char * mitk::CalculateGrayValueStatisticsTool::GetName ( ) const

overridevirtual

Returns the name of this tool. Make it short!

This name has to fit into some kind of button in most applications, so take some time to think of a good name!

Implements mitk::Tool.

Definition at line 46 of file mitkCalculateGrayValueStatisticsTool.cpp.

◆ GetReport()

std::string mitk::CalculateGrayValueStatisticsTool::GetReport ( ) const

virtual

Definition at line 323 of file mitkCalculateGrayValueStatisticsTool.cpp.

◆ GetXPM()

const char ** mitk::CalculateGrayValueStatisticsTool::GetXPM ( ) const

overridevirtual

Returns an icon in the XPM format.

This icon has to fit into some kind of button in most applications, so make it smaller than 25x25 pixels.

XPM is e.g. supported by The Gimp. But if you open any XPM file in your text editor, you will see that you could also "draw" it with an editor.

Implements mitk::Tool.

Definition at line 41 of file mitkCalculateGrayValueStatisticsTool.cpp.

◆ ITKHistogramming()

template<typename TPixel , unsigned int VImageDimension>

void mitk::CalculateGrayValueStatisticsTool::ITKHistogramming	(	itk::Image< TPixel, VImageDimension > *	referenceImage,
		Image *	segmentation,
		std::stringstream &	report
	)