mitk::GIFCooccurenceMatrix Class Reference
#include <mitkGIFCooccurenceMatrix.h>
Inheritance diagram for mitk::GIFCooccurenceMatrix:
Collaboration diagram for mitk::GIFCooccurenceMatrix:
Classes | |
| struct | GIFCooccurenceMatrixConfiguration |
Public Member Functions | |
| mitkClassMacro (GIFCooccurenceMatrix, AbstractGlobalImageFeature) | |
| Calculates features based on the co-occurence matrix. More... | |
| Pointer | Clone () const |
| GIFCooccurenceMatrix () | |
| FeatureListType | CalculateFeatures (const Image::Pointer &image, const Image::Pointer &feature) override |
| Calculates the Cooccurence-Matrix based features for this class. More... | |
| FeatureNameListType | GetFeatureNames () override |
| Returns a list of the names of all features that are calculated from this class. More... | |
| virtual double | GetRange () const |
| virtual void | SetRange (double _arg) |
| void | CalculateFeaturesUsingParameters (const Image::Pointer &feature, const Image::Pointer &mask, const Image::Pointer &maskNoNAN, FeatureListType &featureList) override |
| Calculates the feature of this abstact interface. Does not necessarily considers the parameter settings. More... | |
| void | AddArguments (mitkCommandLineParser &parser) override |
 Public Member Functions inherited from mitk::AbstractGlobalImageFeature | |
| mitkClassMacro (AbstractGlobalImageFeature, BaseData) | |
| FeatureListType | CalculateFeaturesSlicewise (const Image::Pointer &feature, const Image::Pointer &mask, int sliceID) |
| Calculates the given feature Slice-wise. Might not be availble for an individual filter! More... | |
| virtual void | CalculateFeaturesSliceWiseUsingParameters (const Image::Pointer &feature, const Image::Pointer &mask, int sliceID, FeatureListType &featureList) |
| Calculates the feature of this abstact interface. Does not necessarily considers the parameter settings. More... | |
| virtual std::string | GetCurrentFeatureEncoding () |
| Adds an additional Separator to the name of the feature, which encodes the used parameters. More... | |
| std::string | FeatureDescriptionPrefix () |
| Returns a string that encodes the feature class name. More... | |
| virtual void | SetPrefix (std::string _arg) |
| virtual void | SetShortName (std::string _arg) |
| virtual void | SetLongName (std::string _arg) |
| virtual void | SetFeatureClassName (std::string _arg) |
| virtual void | SetDirection (int _arg) |
| void | SetParameter (ParameterTypes param) |
| virtual std::string | GetPrefix () const |
| virtual std::string | GetShortName () const |
| virtual std::string | GetLongName () const |
| virtual std::string | GetFeatureClassName () const |
| virtual ParameterTypes | GetParameter () const |
| virtual void | SetUseQuantifier (bool _arg) |
| virtual bool | GetUseQuantifier () const |
| virtual void | SetQuantifier (IntensityQuantifier::Pointer _arg) |
| virtual IntensityQuantifier::Pointer | GetQuantifier () |
| virtual int | GetDirection () const |
| virtual void | SetMinimumIntensity (double _arg) |
| virtual void | SetUseMinimumIntensity (bool _arg) |
| virtual void | SetMaximumIntensity (double _arg) |
| virtual void | SetUseMaximumIntensity (bool _arg) |
| virtual double | GetMinimumIntensity () const |
| virtual bool | GetUseMinimumIntensity () const |
| virtual double | GetMaximumIntensity () const |
| virtual bool | GetUseMaximumIntensity () const |
| virtual void | SetBinsize (double _arg) |
| virtual void | SetUseBinsize (bool _arg) |
| virtual double | GetBinsize () const |
| virtual bool | GetUseBinsize () const |
| virtual void | SetMorphMask (mitk::Image::Pointer _arg) |
| virtual mitk::Image::Pointer | GetMorphMask () const |
| virtual void | SetBins (int _arg) |
| virtual void | SetUseBins (bool _arg) |
| virtual bool | GetUseBins () const |
| virtual int | GetBins () const |
| virtual void | SetIgnoreMask (bool _arg) |
| virtual bool | GetIgnoreMask () const |
| virtual void | SetEncodeParameters (bool _arg) |
| virtual bool | GetEncodeParameters () const |
| std::string | GetOptionPrefix () const |
| std::vector< double > | SplitDouble (std::string str, char delimiter) |
| void | AddQuantifierArguments (mitkCommandLineParser &parser) |
| void | InitializeQuantifierFromParameters (const Image::Pointer &feature, const Image::Pointer &mask, unsigned int defaultBins=256) |
| void | InitializeQuantifier (const Image::Pointer &feature, const Image::Pointer &mask, unsigned int defaultBins=256) |
| std::string | QuantifierParameterString () |
| void | SetRequestedRegionToLargestPossibleRegion () override |
| Set the RequestedRegion to the LargestPossibleRegion. More... | |
| bool | RequestedRegionIsOutsideOfTheBufferedRegion () override |
| Determine whether the RequestedRegion is outside of the BufferedRegion. More... | |
| bool | VerifyRequestedRegion () override |
| Verify that the RequestedRegion is within the LargestPossibleRegion. More... | |
| void | SetRequestedRegion (const itk::DataObject *) override |
| Set the requested region from this data object to match the requested region of the data object passed in as a parameter. More... | |
| bool | IsEmpty () const override |
| Check whether object contains data (at least at one point in time), e.g., a set of points may be empty. More... | |
| Public Member Functions inherited from mitk::BaseData | |
| virtual std::vector< std::string > | GetClassHierarchy () const |
| virtual const char * | GetClassName () const |
| BaseProperty::ConstPointer | GetConstProperty (const std::string &propertyKey, const std::string &contextName="", bool fallBackOnDefaultContext=true) const override |
| Get property by its key. More... | |
| std::vector< std::string > | GetPropertyKeys (const std::string &contextName="", bool includeDefaultContext=false) const override |
| Query keys of existing properties. More... | |
| std::vector< std::string > | GetPropertyContextNames () const override |
| Query names of existing contexts. More... | |
| BaseProperty * | GetNonConstProperty (const std::string &propertyKey, const std::string &contextName="", bool fallBackOnDefaultContext=true) override |
| Get property by its key. More... | |
| void | SetProperty (const std::string &propertyKey, BaseProperty *property, const std::string &contextName="", bool fallBackOnDefaultContext=false) override |
| Add new or change existent property. More... | |
| void | RemoveProperty (const std::string &propertyKey, const std::string &contextName="", bool fallBackOnDefaultContext=false) override |
| Removes a property. If the property does not exist, nothing will be done. More... | |
| const mitk::TimeGeometry * | GetTimeGeometry () const |
| Return the TimeGeometry of the data as const pointer. More... | |
| const mitk::TimeGeometry * | GetTimeSlicedGeometry () const |
| Return the TimeGeometry of the data as const pointer. More... | |
| mitk::TimeGeometry * | GetTimeGeometry () |
| Return the TimeGeometry of the data as pointer. More... | |
| const mitk::TimeGeometry * | GetUpdatedTimeGeometry () |
| Return the TimeGeometry of the data. More... | |
| const mitk::TimeGeometry * | GetUpdatedTimeSliceGeometry () |
| Return the TimeGeometry of the data. More... | |
| virtual void | Expand (unsigned int timeSteps) |
| Expands the TimeGeometry to a number of TimeSteps. More... | |
| const mitk::BaseGeometry * | GetUpdatedGeometry (int t=0) |
| Return the BaseGeometry of the data at time t. More... | |
| mitk::BaseGeometry * | GetGeometry (int t=0) const |
| Return the geometry, which is a TimeGeometry, of the data as non-const pointer. More... | |
| void | UpdateOutputInformation () override |
| Update the information for this BaseData (the geometry in particular) so that it can be used as an output of a BaseProcess. More... | |
| void | CopyInformation (const itk::DataObject *data) override |
| Copy information from the specified data set. More... | |
| virtual bool | IsInitialized () const |
| Check whether the data has been initialized, i.e., at least the Geometry and other header data has been set. More... | |
| virtual void | Clear () |
| Calls ClearData() and InitializeEmpty();. More... | |
| virtual bool | IsEmptyTimeStep (unsigned int t) const |
| Check whether object contains data (at a specified time), e.g., a set of points may be empty. More... | |
| void | ExecuteOperation (Operation *operation) override |
| overwrite if the Data can be called by an Interactor (StateMachine). More... | |
| virtual void | SetGeometry (BaseGeometry *aGeometry3D) |
| Set the BaseGeometry of the data, which will be referenced (not copied!). Assumes the data object has only 1 time step ( is a 3D object ) and creates a new TimeGeometry which saves the given BaseGeometry. If an TimeGeometry has already been set for the object, it will be replaced after calling this function. More... | |
| virtual void | SetTimeGeometry (TimeGeometry *geometry) |
| Set the TimeGeometry of the data, which will be referenced (not copied!). More... | |
| virtual void | SetClonedGeometry (const BaseGeometry *aGeometry3D) |
| Set a clone of the provided Geometry as Geometry of the data. Assumes the data object has only 1 time step ( is a 3D object ) and creates a new TimeGeometry. If an TimeGeometry has already been set for the object, it will be replaced after calling this function. More... | |
| virtual void | SetClonedTimeGeometry (const TimeGeometry *geometry) |
| Set a clone of the provided TimeGeometry as TimeGeometry of the data. More... | |
| virtual void | SetClonedGeometry (const BaseGeometry *aGeometry3D, unsigned int time) |
| Set a clone of the provided geometry as BaseGeometry of a given time step. More... | |
| mitk::PropertyList::Pointer | GetPropertyList () const |
| Get the data's property list. More... | |
| void | SetPropertyList (PropertyList *propertyList) |
| Set the data's property list. More... | |
| mitk::BaseProperty::Pointer | GetProperty (const char *propertyKey) const |
| Get the property (instance of BaseProperty) with key propertyKey from the PropertyList, and set it to this, respectively;. More... | |
| void | SetProperty (const char *propertyKey, BaseProperty *property) |
| virtual void | SetOrigin (const Point3D &origin) |
| Convenience method for setting the origin of the BaseGeometry instances of all time steps. More... | |
| itk::SmartPointer< mitk::BaseDataSource > | GetSource () const |
| Get the process object that generated this data object. More... | |
| unsigned int | GetTimeSteps () const |
| Get the number of time steps from the TimeGeometry As the base data has not a data vector given by itself, the number of time steps is defined over the time sliced geometry. In sub classes, a better implementation could be over the length of the data vector. More... | |
| unsigned long | GetMTime () const override |
| Get the modified time of the last change of the contents this data object or its geometry. More... | |
| void | Graft (const DataObject *) override |
| Public Member Functions inherited from mitk::OperationActor | |
| itkTypeMacroNoParent (OperationActor) virtual ~OperationActor() | |
| Public Member Functions inherited from mitk::Identifiable | |
| Identifiable () | |
| Identifiable (const UIDType &uid) | |
| Identifiable (const Identifiable &)=delete | |
| Identifiable (Identifiable &&) noexcept | |
| virtual | ~Identifiable () |
| Identifiable & | operator= (const Identifiable &)=delete |
| Identifiable & | operator= (Identifiable &&other) noexcept |
| UIDType | GetUID () const |
| Get unique ID of an object. More... | |
| Public Member Functions inherited from mitk::IPropertyOwner | |
| ~IPropertyOwner () override | |
| Public Member Functions inherited from mitk::IPropertyProvider | |
| virtual | ~IPropertyProvider () |
Static Public Member Functions | |
| static Pointer | New () |
| Static Public Member Functions inherited from mitk::BaseData | |
| static const char * | GetStaticNameOfClass () |
Additional Inherited Members | |
| Public Types inherited from mitk::AbstractGlobalImageFeature | |
| typedef std::vector< std::pair< std::string, double > > | FeatureListType |
| typedef std::vector< std::string > | FeatureNameListType |
| typedef std::map< std::string, us::Any > | ParameterTypes |
| Public Types inherited from mitk::BaseData | |
| typedef BaseData | Self |
| typedef itk::DataObject | Superclass |
| typedef itk::SmartPointer< Self > | Pointer |
| typedef itk::SmartPointer< const Self > | ConstPointer |
| Public Types inherited from mitk::Identifiable | |
| using | UIDType = std::string |
| Protected Member Functions inherited from mitk::BaseData | |
| BaseData () | |
| BaseData (const BaseData &other) | |
| ~BaseData () override | |
| virtual void | InitializeTimeGeometry (unsigned int timeSteps=1) |
| Initialize the TimeGeometry for a number of time steps. The TimeGeometry is initialized empty and evenly timed. In many cases it will be necessary to overwrite this in sub-classes. More... | |
| virtual void | InitializeTimeSlicedGeometry (unsigned int timeSteps=1) |
| Initialize the TimeGeometry for a number of time steps. The TimeGeometry is initialized empty and evenly timed. In many cases it will be necessary to overwrite this in sub-classes. More... | |
| virtual void | ClearData () |
| reset to non-initialized state, release memory More... | |
| virtual void | InitializeEmpty () |
| Pure virtual; Must be used in subclasses to get a data object to a valid state. Should at least create one empty object and call Superclass::InitializeTimeGeometry() to ensure an existing valid geometry. More... | |
| void | PrintSelf (std::ostream &os, itk::Indent indent) const override |
| Protected Attributes inherited from mitk::BaseData | |
| bool | m_LastRequestedRegionWasOutsideOfTheBufferedRegion |
| unsigned int | m_SourceOutputIndexDuplicate |
| bool | m_Initialized |
Detailed Description
Definition at line 23 of file mitkGIFCooccurenceMatrix.h.
Constructor & Destructor Documentation
◆ GIFCooccurenceMatrix()
| mitk::GIFCooccurenceMatrix::GIFCooccurenceMatrix | ( | ) |
Definition at line 254 of file mitkGIFCooccurenceMatrix.cpp.
References mitk::AbstractGlobalImageFeature::SetFeatureClassName(), mitk::AbstractGlobalImageFeature::SetLongName(), and mitk::AbstractGlobalImageFeature::SetShortName().
Member Function Documentation
◆ AddArguments()
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overridevirtual |
Implements mitk::AbstractGlobalImageFeature.
Definition at line 291 of file mitkGIFCooccurenceMatrix.cpp.
References mitkCommandLineParser::addArgument(), mitkCommandLineParser::Bool, mitk::AbstractGlobalImageFeature::GetLongName(), mitk::AbstractGlobalImageFeature::GetOptionPrefix(), and mitkCommandLineParser::String.
◆ CalculateFeatures()
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overridevirtual |
Calculates the Cooccurence-Matrix based features for this class.
Implements mitk::AbstractGlobalImageFeature.
Definition at line 262 of file mitkGIFCooccurenceMatrix.cpp.
References AccessByItk_3, mitk::GIFCooccurenceMatrix::GIFCooccurenceMatrixConfiguration::Bins, CalculateCoocurenceFeatures(), mitk::GIFCooccurenceMatrix::GIFCooccurenceMatrixConfiguration::direction, mitk::AbstractGlobalImageFeature::GetBins(), mitk::AbstractGlobalImageFeature::GetDirection(), mitk::AbstractGlobalImageFeature::GetMaximumIntensity(), mitk::AbstractGlobalImageFeature::GetMinimumIntensity(), mitk::AbstractGlobalImageFeature::GetUseMaximumIntensity(), mitk::AbstractGlobalImageFeature::GetUseMinimumIntensity(), mitk::GIFCooccurenceMatrix::GIFCooccurenceMatrixConfiguration::MaximumIntensity, mitk::GIFCooccurenceMatrix::GIFCooccurenceMatrixConfiguration::MinimumIntensity, mitk::GIFCooccurenceMatrix::GIFCooccurenceMatrixConfiguration::range, mitk::GIFCooccurenceMatrix::GIFCooccurenceMatrixConfiguration::UseMaximumIntensity, and mitk::GIFCooccurenceMatrix::GIFCooccurenceMatrixConfiguration::UseMinimumIntensity.
Referenced by CalculateCoocurenceFeatures().
◆ CalculateFeaturesUsingParameters()
|
overridevirtual |
Calculates the feature of this abstact interface. Does not necessarily considers the parameter settings.
Implements mitk::AbstractGlobalImageFeature.
Definition at line 300 of file mitkGIFCooccurenceMatrix.cpp.
References mitk::AbstractGlobalImageFeature::GetLongName(), mitk::AbstractGlobalImageFeature::GetOptionPrefix(), mitk::AbstractGlobalImageFeature::GetParameter(), MITK_INFO, New(), and mitk::AbstractGlobalImageFeature::SplitDouble().
◆ Clone()
| Pointer mitk::GIFCooccurenceMatrix::Clone | ( | ) | const |
◆ GetFeatureNames()
|
overridevirtual |
Returns a list of the names of all features that are calculated from this class.
Implements mitk::AbstractGlobalImageFeature.
Definition at line 281 of file mitkGIFCooccurenceMatrix.cpp.
◆ GetRange()
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virtual |
◆ mitkClassMacro()
| mitk::GIFCooccurenceMatrix::mitkClassMacro | ( | GIFCooccurenceMatrix | , |
| AbstractGlobalImageFeature | |||
| ) |
Calculates features based on the co-occurence matrix.
This filter calculates features based on the Co-Occurence Matrix.
- Warning
- { This is a legacy class only. If possible, avoid to use it. Use GIFCooccurenceMatrix2 instead.}
◆ New()
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static |
Referenced by CalculateFeaturesUsingParameters(), GenerateGradientWithDimXImage(), and main().
◆ SetRange()
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virtual |
The documentation for this class was generated from the following files:
