#include <mitkAbstractGlobalImageFeature.h>

Inheritance diagram for mitk::AbstractGlobalImageFeature:

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Collaboration diagram for mitk::AbstractGlobalImageFeature:

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Public Types
typedef std::vector< std::pair< std::string, double > >	FeatureListType

typedef std::vector< std::string >	FeatureNameListType

typedef std::map< std::string, us::Any >	ParameterTypes

Public Types inherited from mitk::BaseData
typedef BaseData	Self

typedef itk::DataObject	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

Public Types inherited from mitk::Identifiable
using	UIDType = std::string

Public Member Functions
	mitkClassMacro (AbstractGlobalImageFeature, BaseData)

virtual FeatureListType	CalculateFeatures (const Image::Pointer &feature, const Image::Pointer &mask)=0
	Calculates the feature of this abstact interface. Does not necessarily considers the parameter settings. More...

FeatureListType	CalculateFeaturesSlicewise (const Image::Pointer &feature, const Image::Pointer &mask, int sliceID)
	Calculates the given feature Slice-wise. Might not be availble for an individual filter! More...

virtual void	CalculateFeaturesSliceWiseUsingParameters (const Image::Pointer &feature, const Image::Pointer &mask, int sliceID, FeatureListType &featureList)
	Calculates the feature of this abstact interface. Does not necessarily considers the parameter settings. More...

virtual void	CalculateFeaturesUsingParameters (const Image::Pointer &feature, const Image::Pointer &mask, const Image::Pointer &maskNoNAN, FeatureListType &featureList)=0
	Calculates the feature of this abstact interface. Does not necessarily considers the parameter settings. More...

virtual FeatureNameListType	GetFeatureNames ()=0
	Returns a list of the names of all features that are calculated from this class. More...

virtual std::string	GetCurrentFeatureEncoding ()
	Adds an additional Separator to the name of the feature, which encodes the used parameters. More...

std::string	FeatureDescriptionPrefix ()
	Returns a string that encodes the feature class name. More...

virtual void	SetPrefix (std::string _arg)

virtual void	SetShortName (std::string _arg)

virtual void	SetLongName (std::string _arg)

virtual void	SetFeatureClassName (std::string _arg)

virtual void	SetDirection (int _arg)

void	SetParameter (ParameterTypes param)

virtual std::string	GetPrefix () const

virtual std::string	GetShortName () const

virtual std::string	GetLongName () const

virtual std::string	GetFeatureClassName () const

virtual ParameterTypes	GetParameter () const

virtual void	SetUseQuantifier (bool _arg)

virtual bool	GetUseQuantifier () const

virtual void	SetQuantifier (IntensityQuantifier::Pointer _arg)

virtual IntensityQuantifier::Pointer	GetQuantifier ()

virtual int	GetDirection () const

virtual void	SetMinimumIntensity (double _arg)

virtual void	SetUseMinimumIntensity (bool _arg)

virtual void	SetMaximumIntensity (double _arg)

virtual void	SetUseMaximumIntensity (bool _arg)

virtual double	GetMinimumIntensity () const

virtual bool	GetUseMinimumIntensity () const

virtual double	GetMaximumIntensity () const

virtual bool	GetUseMaximumIntensity () const

virtual void	SetBinsize (double _arg)

virtual void	SetUseBinsize (bool _arg)

virtual double	GetBinsize () const

virtual bool	GetUseBinsize () const

virtual void	SetMorphMask (mitk::Image::Pointer _arg)

virtual mitk::Image::Pointer	GetMorphMask () const

virtual void	SetBins (int _arg)

virtual void	SetUseBins (bool _arg)

virtual bool	GetUseBins () const

virtual int	GetBins () const

virtual void	SetIgnoreMask (bool _arg)

virtual bool	GetIgnoreMask () const

virtual void	SetEncodeParameters (bool _arg)

virtual bool	GetEncodeParameters () const

std::string	GetOptionPrefix () const

virtual void	AddArguments (mitkCommandLineParser &parser)=0

std::vector< double >	SplitDouble (std::string str, char delimiter)

void	AddQuantifierArguments (mitkCommandLineParser &parser)

void	InitializeQuantifierFromParameters (const Image::Pointer &feature, const Image::Pointer &mask, unsigned int defaultBins=256)

void	InitializeQuantifier (const Image::Pointer &feature, const Image::Pointer &mask, unsigned int defaultBins=256)

std::string	QuantifierParameterString ()

void	SetRequestedRegionToLargestPossibleRegion () override
	Set the RequestedRegion to the LargestPossibleRegion. More...

bool	RequestedRegionIsOutsideOfTheBufferedRegion () override
	Determine whether the RequestedRegion is outside of the BufferedRegion. More...

bool	VerifyRequestedRegion () override
	Verify that the RequestedRegion is within the LargestPossibleRegion. More...

void	SetRequestedRegion (const itk::DataObject *) override
	Set the requested region from this data object to match the requested region of the data object passed in as a parameter. More...

bool	IsEmpty () const override
	Check whether object contains data (at least at one point in time), e.g., a set of points may be empty. More...

Public Member Functions inherited from mitk::BaseData
virtual std::vector< std::string >	GetClassHierarchy () const

virtual const char *	GetClassName () const

BaseProperty::ConstPointer	GetConstProperty (const std::string &propertyKey, const std::string &contextName="", bool fallBackOnDefaultContext=true) const override
	Get property by its key. More...

std::vector< std::string >	GetPropertyKeys (const std::string &contextName="", bool includeDefaultContext=false) const override
	Query keys of existing properties. More...

std::vector< std::string >	GetPropertyContextNames () const override
	Query names of existing contexts. More...

BaseProperty *	GetNonConstProperty (const std::string &propertyKey, const std::string &contextName="", bool fallBackOnDefaultContext=true) override
	Get property by its key. More...

void	SetProperty (const std::string &propertyKey, BaseProperty *property, const std::string &contextName="", bool fallBackOnDefaultContext=false) override
	Add new or change existent property. More...

void	RemoveProperty (const std::string &propertyKey, const std::string &contextName="", bool fallBackOnDefaultContext=false) override
	Removes a property. If the property does not exist, nothing will be done. More...

const mitk::TimeGeometry *	GetTimeGeometry () const
	Return the TimeGeometry of the data as const pointer. More...

const mitk::TimeGeometry *	GetTimeSlicedGeometry () const
	Return the TimeGeometry of the data as const pointer. More...

mitk::TimeGeometry *	GetTimeGeometry ()
	Return the TimeGeometry of the data as pointer. More...

const mitk::TimeGeometry *	GetUpdatedTimeGeometry ()
	Return the TimeGeometry of the data. More...

const mitk::TimeGeometry *	GetUpdatedTimeSliceGeometry ()
	Return the TimeGeometry of the data. More...

virtual void	Expand (unsigned int timeSteps)
	Expands the TimeGeometry to a number of TimeSteps. More...

const mitk::BaseGeometry *	GetUpdatedGeometry (int t=0)
	Return the BaseGeometry of the data at time t. More...

mitk::BaseGeometry *	GetGeometry (int t=0) const
	Return the geometry, which is a TimeGeometry, of the data as non-const pointer. More...

void	UpdateOutputInformation () override
	Update the information for this BaseData (the geometry in particular) so that it can be used as an output of a BaseProcess. More...

void	CopyInformation (const itk::DataObject *data) override
	Copy information from the specified data set. More...

virtual bool	IsInitialized () const
	Check whether the data has been initialized, i.e., at least the Geometry and other header data has been set. More...

virtual void	Clear ()
	Calls ClearData() and InitializeEmpty();. More...

virtual bool	IsEmptyTimeStep (unsigned int t) const
	Check whether object contains data (at a specified time), e.g., a set of points may be empty. More...

void	ExecuteOperation (Operation *operation) override
	overwrite if the Data can be called by an Interactor (StateMachine). More...

virtual void	SetGeometry (BaseGeometry *aGeometry3D)
	Set the BaseGeometry of the data, which will be referenced (not copied!). Assumes the data object has only 1 time step ( is a 3D object ) and creates a new TimeGeometry which saves the given BaseGeometry. If an TimeGeometry has already been set for the object, it will be replaced after calling this function. More...

virtual void	SetTimeGeometry (TimeGeometry *geometry)
	Set the TimeGeometry of the data, which will be referenced (not copied!). More...

virtual void	SetClonedGeometry (const BaseGeometry *aGeometry3D)
	Set a clone of the provided Geometry as Geometry of the data. Assumes the data object has only 1 time step ( is a 3D object ) and creates a new TimeGeometry. If an TimeGeometry has already been set for the object, it will be replaced after calling this function. More...

virtual void	SetClonedTimeGeometry (const TimeGeometry *geometry)
	Set a clone of the provided TimeGeometry as TimeGeometry of the data. More...

virtual void	SetClonedGeometry (const BaseGeometry *aGeometry3D, unsigned int time)
	Set a clone of the provided geometry as BaseGeometry of a given time step. More...

mitk::PropertyList::Pointer	GetPropertyList () const
	Get the data's property list. More...

void	SetPropertyList (PropertyList *propertyList)
	Set the data's property list. More...

mitk::BaseProperty::Pointer	GetProperty (const char *propertyKey) const
	Get the property (instance of BaseProperty) with key propertyKey from the PropertyList, and set it to this, respectively;. More...

void	SetProperty (const char propertyKey, BaseProperty property)

virtual void	SetOrigin (const Point3D &origin)
	Convenience method for setting the origin of the BaseGeometry instances of all time steps. More...

itk::SmartPointer< mitk::BaseDataSource >	GetSource () const
	Get the process object that generated this data object. More...

unsigned int	GetTimeSteps () const
	Get the number of time steps from the TimeGeometry As the base data has not a data vector given by itself, the number of time steps is defined over the time sliced geometry. In sub classes, a better implementation could be over the length of the data vector. More...

unsigned long	GetMTime () const override
	Get the modified time of the last change of the contents this data object or its geometry. More...

void	Graft (const DataObject *) override

Public Member Functions inherited from mitk::OperationActor
	itkTypeMacroNoParent (OperationActor) virtual ~OperationActor()

Public Member Functions inherited from mitk::Identifiable
	Identifiable ()

	Identifiable (const UIDType &uid)

	Identifiable (const Identifiable &)=delete

	Identifiable (Identifiable &&) noexcept

virtual	~Identifiable ()

Identifiable &	operator= (const Identifiable &)=delete

Identifiable &	operator= (Identifiable &&other) noexcept

UIDType	GetUID () const
	Get unique ID of an object. More...

Public Member Functions inherited from mitk::IPropertyOwner
	~IPropertyOwner () override

Public Member Functions inherited from mitk::IPropertyProvider
virtual	~IPropertyProvider ()

Additional Inherited Members
Static Public Member Functions inherited from mitk::BaseData
static const char *	GetStaticNameOfClass ()

Protected Member Functions inherited from mitk::BaseData
	BaseData ()

	BaseData (const BaseData &other)

	~BaseData () override

virtual void	InitializeTimeGeometry (unsigned int timeSteps=1)
	Initialize the TimeGeometry for a number of time steps. The TimeGeometry is initialized empty and evenly timed. In many cases it will be necessary to overwrite this in sub-classes. More...

virtual void	InitializeTimeSlicedGeometry (unsigned int timeSteps=1)
	Initialize the TimeGeometry for a number of time steps. The TimeGeometry is initialized empty and evenly timed. In many cases it will be necessary to overwrite this in sub-classes. More...

virtual void	ClearData ()
	reset to non-initialized state, release memory More...

virtual void	InitializeEmpty ()
	Pure virtual; Must be used in subclasses to get a data object to a valid state. Should at least create one empty object and call Superclass::InitializeTimeGeometry() to ensure an existing valid geometry. More...

void	PrintSelf (std::ostream &os, itk::Indent indent) const override

Protected Attributes inherited from mitk::BaseData
bool	m_LastRequestedRegionWasOutsideOfTheBufferedRegion

unsigned int	m_SourceOutputIndexDuplicate

bool	m_Initialized

Detailed Description

Histogram Configuration

Most Feature Generation Classes that use histograms use the same parameters and initialization logic. In general, all information can be passed either by the corresponding Setter (which does not differenciate between global setting and feature specific setting) and a parameter object which can be obtained from the command line arguments, for example.

If the image values are used for the initializiation of the histogram, it can be defined whether the whole image is used or only the masked areas to find minima and maxima. This is done by the option SetIgnoreMask or the corrsponding options -NAME::ignore-mask-for-histogram and -ignore-mask-for-histogram. If these are true, the whole image is used for the calculation.

Depending on the passed arguments, different initialization methods are used. The initialization is in the following order:

If Minimum Intensity, Maximum Intensity, and Binsize: The histogram is initialized between the minimum and maximum intensity. the number of bins is determined by the binsize. If the distance between minimum and maximum is not a multiple of the binsize, the maximum is increase so that it is.
Minimum Intensity, Bins, and Binsize: The histogram is initialized with the given binsize, and the intensity range from the minimum to \(maximum = minimum + binsize*bins\).
Minimum Intensity, Maximum Intensity, and Bins: The histogram is initialized between the given minimum and maximum intensity. The binsize is calculated so that the number of bins is equal to the given number of bins.
Binsize, and Minimum Intensity: The maximum is set to the maximum that occur in the given image. Depending if the mask is considered or not, either only masked voxels or the whole image is used for the calculation. The initialization is then equal as if the minimum and maximum would have been given right from the beginning.
Binsize, and Maximum Intensity: The minimum intensity is set to the minimum that occur in the given image. Depending if the mask is considered or not, either only masked voxels or the whole image is used for the calculation. The initialization is then equal as if the minimum and maximum would have been given right from the beginning.
Binsize: The maximum and the minimum intensity is set to the minimum and maximum that occur in the given image. Depending if the mask is considered or not, either only masked voxels or the whole image is used for the calculation. The initialization is then equal as if the minimum and maximum would have been given right from the beginning.
Bins, and Minimum Intensity: The maximum is calculated from the image. Depending if the mask is considered or not, either only masked voxels or the whole image is used for the calculation. The histogram is then initialized as if these values would have been given as minimum and maximum intensity.
Bins, and Maximum Intensity: The minimum is calculated from the image. Depending if the mask is considered or not, either only masked voxels or the whole image is used for the calculation. The histogram is then initialized as if these values would have been given as minimum and maximum intensity.
Bins: The minimum and the maximum is calculated from the image. Depending if the mask is considered or not, either only masked voxels or * the whole image is used for the calculation. The histogram is then initialized as if these values would have been given as minimum and maximum intensity.
No Parameter given:The minimum and maximum intensity from the whole image or masked image is calculated and the histogram then initialized to this with a standard number of bins (Is set by each filter on its own.)

Remark about command line parameter

There are generally two options to set a parameter via the command line. A global one that works for all filters that use histograms and a local one that set this parameter specific for this filter. The local parameters start with the filter name (Indiciated by NAME) followed by two colons, for example vol::min to set the minimum intensity for the volume filter. The global parameter is overwritten by the local parameter, if it is specified. Otherwise, it is still valid. If this prevents the specification of an histogram initialization method (for example, because the binsize is globally specified but the histogram should be initialized using a fixed numbe of bins), the parameter NAME::ignore-global-histogram can be passed. Then, all global histogram parameters are ignored and only local ones are used.

The maximum intensity can be set by different command line parameters: global for all filters that use histograms by -minimum-intensity and -minimum. Alternative it can be set only for this filter by -NAME::minimum and -NAMEmin.

The minimum intensity can be set by different command line parameters: global for all filters that use histograms by -maximum-intensity and -maximum. Alternative it can be set only for this filter by ::maximum and NAME::max.

The binsize can be set by different command line parameters: global for all filters that use histograms by -binsize. Alternative it can be set only for this filter by ::binsize.

The number of bins can be set by different command line parameters: global for all filters that use histograms by -bins. Alternative it can be set only for this filter by ::bins.

Note to the developers

All features are supposed to work the same way if a histogram is used somewhere in the code. For this, each derived class that makes use of a histogram should use the Quantifier object. In order to use this object correctly, the AddArguments-Function should contain the line AddQuantifierArguments(parser);, the CalculateFeaturesUsingParameters function should contain the line InitializeQuantifierFromParameters(feature, mask); and the CalculateFeatures function sould contain the line InitializeQuantifier(image, mask);. These function calls ensure that the necessary options are given to the configuration file, and that the initialization of the quantifier is done correctly. This ensures an consistend behavior over all FeatureGeneration Classes.

Definition at line 124 of file mitkAbstractGlobalImageFeature.h.

Member Typedef Documentation

◆ FeatureListType

typedef std::vector< std::pair<std::string, double> > mitk::AbstractGlobalImageFeature::FeatureListType

Definition at line 129 of file mitkAbstractGlobalImageFeature.h.

◆ FeatureNameListType

typedef std::vector< std::string> mitk::AbstractGlobalImageFeature::FeatureNameListType

Definition at line 130 of file mitkAbstractGlobalImageFeature.h.

◆ ParameterTypes

typedef std::map<std::string, us::Any> mitk::AbstractGlobalImageFeature::ParameterTypes

Definition at line 131 of file mitkAbstractGlobalImageFeature.h.

Member Function Documentation

◆ AddArguments()

virtual void mitk::AbstractGlobalImageFeature::AddArguments ( mitkCommandLineParser & parser )

pure virtual

Implemented in mitk::GIFGreyLevelDistanceZone, mitk::GIFCooccurenceMatrix2, mitk::GIFFirstOrderNumericStatistics, mitk::GIFFirstOrderStatistics, mitk::GIFNeighbouringGreyLevelDependenceFeature, mitk::GIFVolumetricStatistics, mitk::GIFVolumetricDensityStatistics, mitk::GIFGreyLevelRunLength, mitk::GIFGreyLevelSizeZone, mitk::GIFFirstOrderHistogramStatistics, mitk::GIFCurvatureStatistic, mitk::GIFNeighbourhoodGreyToneDifferenceFeatures, mitk::GIFImageDescriptionFeatures, mitk::GIFIntensityVolumeHistogramFeatures, mitk::GIFLocalIntensity, mitk::GIFCooccurenceMatrix, and mitk::GIFNeighbourhoodGreyLevelDifference.

◆ AddQuantifierArguments()

void mitk::AbstractGlobalImageFeature::AddQuantifierArguments ( mitkCommandLineParser & parser )

Definition at line 132 of file mitkAbstractGlobalImageFeature.cpp.

References mitkCommandLineParser::addArgument(), mitkCommandLineParser::Bool, mitkCommandLineParser::Float, GetOptionPrefix(), and mitkCommandLineParser::Int.

Referenced by mitk::GIFNeighbourhoodGreyToneDifferenceFeatures::AddArguments(), mitk::GIFFirstOrderHistogramStatistics::AddArguments(), mitk::GIFGreyLevelSizeZone::AddArguments(), mitk::GIFGreyLevelRunLength::AddArguments(), mitk::GIFNeighbouringGreyLevelDependenceFeature::AddArguments(), mitk::GIFFirstOrderStatistics::AddArguments(), mitk::GIFCooccurenceMatrix2::AddArguments(), and mitk::GIFGreyLevelDistanceZone::AddArguments().

◆ CalculateFeatures()

virtual FeatureListType mitk::AbstractGlobalImageFeature::CalculateFeatures	(	const Image::Pointer &	feature,
		const Image::Pointer &	mask
	)

pure virtual

Calculates the feature of this abstact interface. Does not necessarily considers the parameter settings.

Implemented in mitk::GIFGreyLevelDistanceZone, mitk::GIFCooccurenceMatrix2, mitk::GIFFirstOrderNumericStatistics, mitk::GIFFirstOrderStatistics, mitk::GIFNeighbouringGreyLevelDependenceFeature, mitk::GIFVolumetricStatistics, mitk::GIFVolumetricDensityStatistics, mitk::GIFGreyLevelRunLength, mitk::GIFGreyLevelSizeZone, mitk::GIFFirstOrderHistogramStatistics, mitk::GIFCurvatureStatistic, mitk::GIFNeighbourhoodGreyToneDifferenceFeatures, mitk::GIFImageDescriptionFeatures, mitk::GIFIntensityVolumeHistogramFeatures, mitk::GIFLocalIntensity, mitk::GIFCooccurenceMatrix, and mitk::GIFNeighbourhoodGreyLevelDifference.

Referenced by CalculateFeaturesSlicewise().

◆ CalculateFeaturesSlicewise()

mitk::AbstractGlobalImageFeature::FeatureListType mitk::AbstractGlobalImageFeature::CalculateFeaturesSlicewise	(	const Image::Pointer &	feature,
		const Image::Pointer &	mask,
		int	sliceID
	)

Calculates the given feature Slice-wise. Might not be availble for an individual filter!

Definition at line 341 of file mitkAbstractGlobalImageFeature.cpp.

References CalculateFeatures(), CalculateFeaturesUsingParameters(), and ExtractSlicesFromImages().

Referenced by CalculateFeaturesSliceWiseUsingParameters().

◆ CalculateFeaturesSliceWiseUsingParameters()

void mitk::AbstractGlobalImageFeature::CalculateFeaturesSliceWiseUsingParameters	(	const Image::Pointer &	feature,
		const Image::Pointer &	mask,
		int	sliceID,
		FeatureListType &	featureList
	)

virtual

Calculates the feature of this abstact interface. Does not necessarily considers the parameter settings.

Definition at line 334 of file mitkAbstractGlobalImageFeature.cpp.

References CalculateFeaturesSlicewise().

◆ CalculateFeaturesUsingParameters()

virtual void mitk::AbstractGlobalImageFeature::CalculateFeaturesUsingParameters	(	const Image::Pointer &	feature,
		const Image::Pointer &	mask,
		const Image::Pointer &	maskNoNAN,
		FeatureListType &	featureList
	)

pure virtual

Calculates the feature of this abstact interface. Does not necessarily considers the parameter settings.

Implemented in mitk::GIFGreyLevelDistanceZone, mitk::GIFCooccurenceMatrix2, mitk::GIFFirstOrderNumericStatistics, mitk::GIFFirstOrderStatistics, mitk::GIFNeighbouringGreyLevelDependenceFeature, mitk::GIFVolumetricStatistics, mitk::GIFVolumetricDensityStatistics, mitk::GIFGreyLevelRunLength, mitk::GIFGreyLevelSizeZone, mitk::GIFFirstOrderHistogramStatistics, mitk::GIFCurvatureStatistic, mitk::GIFNeighbourhoodGreyToneDifferenceFeatures, mitk::GIFImageDescriptionFeatures, mitk::GIFIntensityVolumeHistogramFeatures, mitk::GIFLocalIntensity, mitk::GIFCooccurenceMatrix, and mitk::GIFNeighbourhoodGreyLevelDifference.

Referenced by CalculateFeaturesSlicewise().

◆ FeatureDescriptionPrefix()

std::string mitk::AbstractGlobalImageFeature::FeatureDescriptionPrefix ( )

Returns a string that encodes the feature class name.

This Feature returns a string that should be put before every other feature value. It has the format [<Prefix>::]<Feature class="" name>="">::[<Parameter encoding>="">::]. The options <Prefix> and <Parameter encoding>=""> are only added, if the corresponding options are set.

Definition at line 277 of file mitkAbstractGlobalImageFeature.cpp.

References GetCurrentFeatureEncoding().

◆ GetBins()

virtual int mitk::AbstractGlobalImageFeature::GetBins ( ) const

virtual

Referenced by mitk::GIFCooccurenceMatrix::CalculateFeatures(), InitializeQuantifier(), and QuantifierParameterString().

◆ GetBinsize()

virtual double mitk::AbstractGlobalImageFeature::GetBinsize ( ) const

virtual

Referenced by InitializeQuantifier(), and QuantifierParameterString().

◆ GetCurrentFeatureEncoding()

std::string mitk::AbstractGlobalImageFeature::GetCurrentFeatureEncoding ( )

virtual

Adds an additional Separator to the name of the feature, which encodes the used parameters.

Reimplemented in mitk::GIFGreyLevelDistanceZone, mitk::GIFCooccurenceMatrix2, mitk::GIFFirstOrderNumericStatistics, mitk::GIFFirstOrderStatistics, mitk::GIFNeighbouringGreyLevelDependenceFeature, mitk::GIFGreyLevelRunLength, mitk::GIFGreyLevelSizeZone, mitk::GIFFirstOrderHistogramStatistics, mitk::GIFNeighbourhoodGreyToneDifferenceFeatures, mitk::GIFIntensityVolumeHistogramFeatures, and mitk::GIFLocalIntensity.

Definition at line 272 of file mitkAbstractGlobalImageFeature.cpp.

Referenced by FeatureDescriptionPrefix().

◆ GetDirection()

virtual int mitk::AbstractGlobalImageFeature::GetDirection ( ) const

virtual

Referenced by mitk::GIFNeighbourhoodGreyLevelDifference::CalculateFeatures(), mitk::GIFCooccurenceMatrix::CalculateFeatures(), mitk::GIFGreyLevelSizeZone::CalculateFeatures(), mitk::GIFGreyLevelRunLength::CalculateFeatures(), mitk::GIFNeighbouringGreyLevelDependenceFeature::CalculateFeatures(), mitk::GIFCooccurenceMatrix2::CalculateFeatures(), and mitk::GIFGreyLevelDistanceZone::CalculateFeatures().

◆ GetEncodeParameters()

virtual bool mitk::AbstractGlobalImageFeature::GetEncodeParameters ( ) const

virtual

◆ GetFeatureClassName()

virtual std::string mitk::AbstractGlobalImageFeature::GetFeatureClassName ( ) const

virtual

◆ GetFeatureNames()

virtual FeatureNameListType mitk::AbstractGlobalImageFeature::GetFeatureNames ( )

pure virtual

Returns a list of the names of all features that are calculated from this class.

Implemented in mitk::GIFGreyLevelDistanceZone, mitk::GIFCooccurenceMatrix2, mitk::GIFFirstOrderNumericStatistics, mitk::GIFFirstOrderStatistics, mitk::GIFNeighbouringGreyLevelDependenceFeature, mitk::GIFVolumetricStatistics, mitk::GIFVolumetricDensityStatistics, mitk::GIFGreyLevelRunLength, mitk::GIFGreyLevelSizeZone, mitk::GIFFirstOrderHistogramStatistics, mitk::GIFCurvatureStatistic, mitk::GIFNeighbourhoodGreyToneDifferenceFeatures, mitk::GIFImageDescriptionFeatures, mitk::GIFIntensityVolumeHistogramFeatures, mitk::GIFLocalIntensity, mitk::GIFCooccurenceMatrix, and mitk::GIFNeighbourhoodGreyLevelDifference.

◆ GetIgnoreMask()

virtual bool mitk::AbstractGlobalImageFeature::GetIgnoreMask ( ) const

virtual

Referenced by InitializeQuantifier(), and QuantifierParameterString().

◆ GetLongName()

virtual std::string mitk::AbstractGlobalImageFeature::GetLongName ( ) const

virtual

◆ GetMaximumIntensity()

virtual double mitk::AbstractGlobalImageFeature::GetMaximumIntensity ( ) const

virtual

Referenced by mitk::GIFCooccurenceMatrix::CalculateFeatures(), InitializeQuantifier(), and QuantifierParameterString().

◆ GetMinimumIntensity()

virtual double mitk::AbstractGlobalImageFeature::GetMinimumIntensity ( ) const

virtual

Referenced by mitk::GIFCooccurenceMatrix::CalculateFeatures(), InitializeQuantifier(), and QuantifierParameterString().

◆ GetMorphMask()

virtual mitk::Image::Pointer mitk::AbstractGlobalImageFeature::GetMorphMask ( ) const

virtual

Referenced by mitk::GIFGreyLevelDistanceZone::CalculateFeatures().

◆ GetOptionPrefix()

std::string mitk::AbstractGlobalImageFeature::GetOptionPrefix ( ) const

inline

Definition at line 222 of file mitkAbstractGlobalImageFeature.h.

References mask.

◆ GetParameter()

virtual ParameterTypes mitk::AbstractGlobalImageFeature::GetParameter ( ) const

virtual

◆ GetPrefix()

virtual std::string mitk::AbstractGlobalImageFeature::GetPrefix ( ) const

virtual

◆ GetQuantifier()

virtual IntensityQuantifier::Pointer mitk::AbstractGlobalImageFeature::GetQuantifier ( )

virtual

Referenced by mitk::GIFNeighbourhoodGreyToneDifferenceFeatures::CalculateFeatures(), mitk::GIFFirstOrderHistogramStatistics::CalculateFeatures(), mitk::GIFGreyLevelSizeZone::CalculateFeatures(), mitk::GIFGreyLevelRunLength::CalculateFeatures(), mitk::GIFNeighbouringGreyLevelDependenceFeature::CalculateFeatures(), mitk::GIFFirstOrderStatistics::CalculateFeatures(), mitk::GIFCooccurenceMatrix2::CalculateFeatures(), and mitk::GIFGreyLevelDistanceZone::CalculateFeatures().

◆ GetShortName()

virtual std::string mitk::AbstractGlobalImageFeature::GetShortName ( ) const

virtual

◆ GetUseBins()

virtual bool mitk::AbstractGlobalImageFeature::GetUseBins ( ) const

virtual

Referenced by InitializeQuantifier(), and QuantifierParameterString().

◆ GetUseBinsize()

virtual bool mitk::AbstractGlobalImageFeature::GetUseBinsize ( ) const

virtual

Referenced by InitializeQuantifier(), and QuantifierParameterString().

◆ GetUseMaximumIntensity()

virtual bool mitk::AbstractGlobalImageFeature::GetUseMaximumIntensity ( ) const

virtual

Referenced by mitk::GIFCooccurenceMatrix::CalculateFeatures(), InitializeQuantifier(), and QuantifierParameterString().

◆ GetUseMinimumIntensity()

virtual bool mitk::AbstractGlobalImageFeature::GetUseMinimumIntensity ( ) const

virtual

Referenced by mitk::GIFCooccurenceMatrix::CalculateFeatures(), InitializeQuantifier(), and QuantifierParameterString().

◆ GetUseQuantifier()

virtual bool mitk::AbstractGlobalImageFeature::GetUseQuantifier ( ) const

virtual

◆ InitializeQuantifier()

void mitk::AbstractGlobalImageFeature::InitializeQuantifier	(	const Image::Pointer &	feature,
		const Image::Pointer &	mask,
		unsigned int	defaultBins = `256`
	)

◆ InitializeQuantifierFromParameters()

void mitk::AbstractGlobalImageFeature::InitializeQuantifierFromParameters	(	const Image::Pointer &	feature,
		const Image::Pointer &	mask,
		unsigned int	defaultBins = `256`
	)

Definition at line 145 of file mitkAbstractGlobalImageFeature.cpp.

References us::any_cast(), GetOptionPrefix(), GetParameter(), InitializeQuantifier(), SetBins(), SetBinsize(), SetIgnoreMask(), SetMaximumIntensity(), SetMinimumIntensity(), SetUseBins(), SetUseBinsize(), SetUseMaximumIntensity(), and SetUseMinimumIntensity().

◆ IsEmpty()

bool mitk::AbstractGlobalImageFeature::IsEmpty ( ) const

inlineoverridevirtual

Check whether object contains data (at least at one point in time), e.g., a set of points may be empty.

Warning: Returns IsInitialized()==false by default for compatibility reasons. Override in sub-classes that support distinction between empty/non-empty state.

Reimplemented from mitk::BaseData.

Definition at line 248 of file mitkAbstractGlobalImageFeature.h.

◆ mitkClassMacro()

mitk::AbstractGlobalImageFeature::mitkClassMacro	(	AbstractGlobalImageFeature	,
		BaseData
	)

◆ QuantifierParameterString()

std::string mitk::AbstractGlobalImageFeature::QuantifierParameterString ( )

Definition at line 288 of file mitkAbstractGlobalImageFeature.cpp.

References GetBins(), GetBinsize(), GetIgnoreMask(), GetMaximumIntensity(), GetMinimumIntensity(), GetUseBins(), GetUseBinsize(), GetUseMaximumIntensity(), and GetUseMinimumIntensity().

◆ RequestedRegionIsOutsideOfTheBufferedRegion()

bool mitk::AbstractGlobalImageFeature::RequestedRegionIsOutsideOfTheBufferedRegion ( )

inlineoverridevirtual

Determine whether the RequestedRegion is outside of the BufferedRegion.

This method returns true if the RequestedRegion is outside the BufferedRegion (true if at least one pixel is outside). This is used by the pipeline mechanism to determine whether a filter needs to re-execute in order to satisfy the current request. If the current RequestedRegion is already inside the BufferedRegion from the previous execution (and the current filter is up to date), then a given filter does not need to re-execute

Implements mitk::BaseData.

Definition at line 243 of file mitkAbstractGlobalImageFeature.h.

◆ SetBins()

virtual void mitk::AbstractGlobalImageFeature::SetBins ( int _arg )

virtual

Referenced by InitializeQuantifierFromParameters().

◆ SetBinsize()

virtual void mitk::AbstractGlobalImageFeature::SetBinsize ( double _arg )

virtual

Referenced by InitializeQuantifierFromParameters().

◆ SetDirection()

virtual void mitk::AbstractGlobalImageFeature::SetDirection ( int _arg )

virtual

Referenced by mitk::GIFNeighbourhoodGreyLevelDifference::CalculateFeaturesUsingParameters().

◆ SetEncodeParameters()

virtual void mitk::AbstractGlobalImageFeature::SetEncodeParameters ( bool _arg )

virtual

◆ SetFeatureClassName()

virtual void mitk::AbstractGlobalImageFeature::SetFeatureClassName ( std::string _arg )

virtual

Referenced by mitk::GIFCooccurenceMatrix::GIFCooccurenceMatrix(), mitk::GIFCooccurenceMatrix2::GIFCooccurenceMatrix2(), mitk::GIFCurvatureStatistic::GIFCurvatureStatistic(), mitk::GIFFirstOrderHistogramStatistics::GIFFirstOrderHistogramStatistics(), mitk::GIFFirstOrderStatistics::GIFFirstOrderStatistics(), mitk::GIFGreyLevelDistanceZone::GIFGreyLevelDistanceZone(), mitk::GIFGreyLevelRunLength::GIFGreyLevelRunLength(), mitk::GIFGreyLevelSizeZone::GIFGreyLevelSizeZone(), mitk::GIFImageDescriptionFeatures::GIFImageDescriptionFeatures(), mitk::GIFLocalIntensity::GIFLocalIntensity(), mitk::GIFNeighbourhoodGreyToneDifferenceFeatures::GIFNeighbourhoodGreyToneDifferenceFeatures(), mitk::GIFNeighbouringGreyLevelDependenceFeature::GIFNeighbouringGreyLevelDependenceFeature(), and mitk::GIFVolumetricStatistics::GIFVolumetricStatistics().

◆ SetIgnoreMask()

virtual void mitk::AbstractGlobalImageFeature::SetIgnoreMask ( bool _arg )

virtual

Referenced by InitializeQuantifierFromParameters().

◆ SetLongName()

virtual void mitk::AbstractGlobalImageFeature::SetLongName ( std::string _arg )

virtual

Referenced by mitk::GIFCooccurenceMatrix::GIFCooccurenceMatrix(), mitk::GIFCooccurenceMatrix2::GIFCooccurenceMatrix2(), mitk::GIFCurvatureStatistic::GIFCurvatureStatistic(), mitk::GIFFirstOrderHistogramStatistics::GIFFirstOrderHistogramStatistics(), mitk::GIFFirstOrderStatistics::GIFFirstOrderStatistics(), mitk::GIFGreyLevelDistanceZone::GIFGreyLevelDistanceZone(), mitk::GIFGreyLevelRunLength::GIFGreyLevelRunLength(), mitk::GIFGreyLevelSizeZone::GIFGreyLevelSizeZone(), mitk::GIFImageDescriptionFeatures::GIFImageDescriptionFeatures(), mitk::GIFLocalIntensity::GIFLocalIntensity(), mitk::GIFNeighbourhoodGreyLevelDifference::GIFNeighbourhoodGreyLevelDifference(), mitk::GIFNeighbourhoodGreyToneDifferenceFeatures::GIFNeighbourhoodGreyToneDifferenceFeatures(), mitk::GIFNeighbouringGreyLevelDependenceFeature::GIFNeighbouringGreyLevelDependenceFeature(), and mitk::GIFVolumetricStatistics::GIFVolumetricStatistics().

◆ SetMaximumIntensity()

virtual void mitk::AbstractGlobalImageFeature::SetMaximumIntensity ( double _arg )

virtual

Referenced by InitializeQuantifierFromParameters().

◆ SetMinimumIntensity()

virtual void mitk::AbstractGlobalImageFeature::SetMinimumIntensity ( double _arg )

virtual

Referenced by InitializeQuantifierFromParameters().

◆ SetMorphMask()

virtual void mitk::AbstractGlobalImageFeature::SetMorphMask ( mitk::Image::Pointer _arg )

virtual

◆ SetParameter()

void mitk::AbstractGlobalImageFeature::SetParameter ( ParameterTypes param )

inline

Definition at line 178 of file mitkAbstractGlobalImageFeature.h.

◆ SetPrefix()

virtual void mitk::AbstractGlobalImageFeature::SetPrefix ( std::string _arg )

virtual

◆ SetQuantifier()

virtual void mitk::AbstractGlobalImageFeature::SetQuantifier ( IntensityQuantifier::Pointer _arg )

virtual

◆ SetRequestedRegion()

void mitk::AbstractGlobalImageFeature::SetRequestedRegion ( const itk::DataObject * data )

inlineoverridevirtual

Set the requested region from this data object to match the requested region of the data object passed in as a parameter.

This method is implemented in the concrete subclasses of BaseData.

Implements mitk::BaseData.

Definition at line 245 of file mitkAbstractGlobalImageFeature.h.

◆ SetRequestedRegionToLargestPossibleRegion()

void mitk::AbstractGlobalImageFeature::SetRequestedRegionToLargestPossibleRegion ( )

inlineoverridevirtual

Set the RequestedRegion to the LargestPossibleRegion.

This forces a filter to produce all of the output in one execution (i.e. not streaming) on the next call to Update().

Implements mitk::BaseData.

Definition at line 242 of file mitkAbstractGlobalImageFeature.h.

◆ SetShortName()

virtual void mitk::AbstractGlobalImageFeature::SetShortName ( std::string _arg )

virtual

Referenced by mitk::GIFCooccurenceMatrix::GIFCooccurenceMatrix(), mitk::GIFCooccurenceMatrix2::GIFCooccurenceMatrix2(), mitk::GIFCurvatureStatistic::GIFCurvatureStatistic(), mitk::GIFFirstOrderHistogramStatistics::GIFFirstOrderHistogramStatistics(), mitk::GIFFirstOrderStatistics::GIFFirstOrderStatistics(), mitk::GIFGreyLevelDistanceZone::GIFGreyLevelDistanceZone(), mitk::GIFGreyLevelRunLength::GIFGreyLevelRunLength(), mitk::GIFGreyLevelSizeZone::GIFGreyLevelSizeZone(), mitk::GIFImageDescriptionFeatures::GIFImageDescriptionFeatures(), mitk::GIFLocalIntensity::GIFLocalIntensity(), mitk::GIFNeighbourhoodGreyLevelDifference::GIFNeighbourhoodGreyLevelDifference(), mitk::GIFNeighbourhoodGreyToneDifferenceFeatures::GIFNeighbourhoodGreyToneDifferenceFeatures(), mitk::GIFNeighbouringGreyLevelDependenceFeature::GIFNeighbouringGreyLevelDependenceFeature(), and mitk::GIFVolumetricStatistics::GIFVolumetricStatistics().

◆ SetUseBins()

virtual void mitk::AbstractGlobalImageFeature::SetUseBins ( bool _arg )

virtual

Referenced by InitializeQuantifierFromParameters().

◆ SetUseBinsize()

virtual void mitk::AbstractGlobalImageFeature::SetUseBinsize ( bool _arg )

virtual

Referenced by InitializeQuantifierFromParameters().

◆ SetUseMaximumIntensity()

virtual void mitk::AbstractGlobalImageFeature::SetUseMaximumIntensity ( bool _arg )

virtual

Referenced by InitializeQuantifierFromParameters().

◆ SetUseMinimumIntensity()

virtual void mitk::AbstractGlobalImageFeature::SetUseMinimumIntensity ( bool _arg )

virtual

Referenced by InitializeQuantifierFromParameters().

◆ SetUseQuantifier()

virtual void mitk::AbstractGlobalImageFeature::SetUseQuantifier ( bool _arg )

virtual

◆ SplitDouble()

std::vector< double > mitk::AbstractGlobalImageFeature::SplitDouble	(	std::string	str,
		char	delimiter
	)

Definition at line 118 of file mitkAbstractGlobalImageFeature.cpp.

Referenced by mitk::GIFNeighbourhoodGreyLevelDifference::CalculateFeaturesUsingParameters(), mitk::GIFCooccurenceMatrix::CalculateFeaturesUsingParameters(), mitk::GIFNeighbouringGreyLevelDependenceFeature::CalculateFeaturesUsingParameters(), and mitk::GIFCooccurenceMatrix2::CalculateFeaturesUsingParameters().

◆ VerifyRequestedRegion()

bool mitk::AbstractGlobalImageFeature::VerifyRequestedRegion ( )

inlineoverridevirtual

Verify that the RequestedRegion is within the LargestPossibleRegion.

If the RequestedRegion is not within the LargestPossibleRegion, then the filter cannot possibly satisfy the request. This method returns true if the request can be satisfied (even if it will be necessary to process the entire LargestPossibleRegion) and returns false otherwise. This method is used by PropagateRequestedRegion(). PropagateRequestedRegion() throws a InvalidRequestedRegionError exception if the requested region is not within the LargestPossibleRegion.

Implements mitk::BaseData.

Definition at line 244 of file mitkAbstractGlobalImageFeature.h.

The documentation for this class was generated from the following files:

Public Types

Public Member Functions

Additional Inherited Members

Detailed Description

Histogram Configuration

Remark about command line parameter

Note to the developers

Member Typedef Documentation

◆ FeatureListType

◆ FeatureNameListType

◆ ParameterTypes

Member Function Documentation

◆ AddArguments()

◆ AddQuantifierArguments()

◆ CalculateFeatures()

◆ CalculateFeaturesSlicewise()

◆ CalculateFeaturesSliceWiseUsingParameters()

◆ CalculateFeaturesUsingParameters()

◆ FeatureDescriptionPrefix()

◆ GetBins()

◆ GetBinsize()

◆ GetCurrentFeatureEncoding()

◆ GetDirection()

◆ GetEncodeParameters()

◆ GetFeatureClassName()

◆ GetFeatureNames()

◆ GetIgnoreMask()

◆ GetLongName()

◆ GetMaximumIntensity()

◆ GetMinimumIntensity()

◆ GetMorphMask()

◆ GetOptionPrefix()

◆ GetParameter()

◆ GetPrefix()

◆ GetQuantifier()

◆ GetShortName()

◆ GetUseBins()

◆ GetUseBinsize()

◆ GetUseMaximumIntensity()

◆ GetUseMinimumIntensity()

◆ GetUseQuantifier()

◆ InitializeQuantifier()

◆ InitializeQuantifierFromParameters()

◆ IsEmpty()

◆ mitkClassMacro()

◆ QuantifierParameterString()

◆ RequestedRegionIsOutsideOfTheBufferedRegion()

◆ SetBins()

◆ SetBinsize()

◆ SetDirection()

◆ SetEncodeParameters()

◆ SetFeatureClassName()

◆ SetIgnoreMask()

◆ SetLongName()

◆ SetMaximumIntensity()

◆ SetMinimumIntensity()

◆ SetMorphMask()

◆ SetParameter()

◆ SetPrefix()

◆ SetQuantifier()

◆ SetRequestedRegion()

◆ SetRequestedRegionToLargestPossibleRegion()

◆ SetShortName()

◆ SetUseBins()

◆ SetUseBinsize()

◆ SetUseMaximumIntensity()

◆ SetUseMinimumIntensity()

◆ SetUseQuantifier()

◆ SplitDouble()

◆ VerifyRequestedRegion()