#include <mitkIntensityQuantifier.h>

Inheritance diagram for mitk::IntensityQuantifier:

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Collaboration diagram for mitk::IntensityQuantifier:

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Public Member Functions
	mitkClassMacro (IntensityQuantifier, BaseData)

Pointer	Clone () const

	IntensityQuantifier ()

void	InitializeByMinimumMaximum (double minimum, double maximum, unsigned int bins)

void	InitializeByBinsizeAndBins (double minimum, unsigned int bins, double binsize)

void	InitializeByBinsizeAndMaximum (double minimum, double maximum, double binsize)

void	InitializeByImage (mitk::Image::Pointer image, unsigned int bins)

void	InitializeByImageAndMaximum (mitk::Image::Pointer image, double maximum, unsigned int bins)

void	InitializeByImageAndMinimum (mitk::Image::Pointer image, double minimum, unsigned int bins)

void	InitializeByImageRegion (mitk::Image::Pointer image, mitk::Image::Pointer mask, unsigned int bins)

void	InitializeByImageRegionAndMinimum (mitk::Image::Pointer image, mitk::Image::Pointer mask, double minimum, unsigned int bins)

void	InitializeByImageRegionAndMaximum (mitk::Image::Pointer image, mitk::Image::Pointer mask, double maximum, unsigned int bins)

void	InitializeByImageAndBinsize (mitk::Image::Pointer image, double binsize)

void	InitializeByImageAndBinsizeAndMinimum (mitk::Image::Pointer image, double minimum, double binsize)

void	InitializeByImageAndBinsizeAndMaximum (mitk::Image::Pointer image, double maximum, double binsize)

void	InitializeByImageRegionAndBinsize (mitk::Image::Pointer image, mitk::Image::Pointer mask, double binsize)

void	InitializeByImageRegionAndBinsizeAndMinimum (mitk::Image::Pointer image, mitk::Image::Pointer mask, double minimum, double binsize)

void	InitializeByImageRegionAndBinsizeAndMaximum (mitk::Image::Pointer image, mitk::Image::Pointer mask, double maximum, double binsize)

unsigned int	IntensityToIndex (double intensity)

double	IndexToMinimumIntensity (unsigned int index)

double	IndexToMeanIntensity (unsigned int index)

double	IndexToMaximumIntensity (unsigned int index)

virtual bool	GetInitialized () const

virtual unsigned int	GetBins () const

virtual double	GetBinsize () const

virtual double	GetMinimum () const

virtual double	GetMaximum () const

void	SetRequestedRegionToLargestPossibleRegion () override
	Set the RequestedRegion to the LargestPossibleRegion. More...

bool	RequestedRegionIsOutsideOfTheBufferedRegion () override
	Determine whether the RequestedRegion is outside of the BufferedRegion. More...

bool	VerifyRequestedRegion () override
	Verify that the RequestedRegion is within the LargestPossibleRegion. More...

void	SetRequestedRegion (const itk::DataObject *) override
	Set the requested region from this data object to match the requested region of the data object passed in as a parameter. More...

bool	IsEmpty () const override
	Check whether object contains data (at least at one point in time), e.g., a set of points may be empty. More...

Public Member Functions inherited from mitk::BaseData
virtual std::vector< std::string >	GetClassHierarchy () const

virtual const char *	GetClassName () const

BaseProperty::ConstPointer	GetConstProperty (const std::string &propertyKey, const std::string &contextName="", bool fallBackOnDefaultContext=true) const override
	Get property by its key. More...

std::vector< std::string >	GetPropertyKeys (const std::string &contextName="", bool includeDefaultContext=false) const override
	Query keys of existing properties. More...

std::vector< std::string >	GetPropertyContextNames () const override
	Query names of existing contexts. More...

BaseProperty *	GetNonConstProperty (const std::string &propertyKey, const std::string &contextName="", bool fallBackOnDefaultContext=true) override
	Get property by its key. More...

void	SetProperty (const std::string &propertyKey, BaseProperty *property, const std::string &contextName="", bool fallBackOnDefaultContext=false) override
	Add new or change existent property. More...

void	RemoveProperty (const std::string &propertyKey, const std::string &contextName="", bool fallBackOnDefaultContext=false) override
	Removes a property. If the property does not exist, nothing will be done. More...

const mitk::TimeGeometry *	GetTimeGeometry () const
	Return the TimeGeometry of the data as const pointer. More...

const mitk::TimeGeometry *	GetTimeSlicedGeometry () const
	Return the TimeGeometry of the data as const pointer. More...

mitk::TimeGeometry *	GetTimeGeometry ()
	Return the TimeGeometry of the data as pointer. More...

const mitk::TimeGeometry *	GetUpdatedTimeGeometry ()
	Return the TimeGeometry of the data. More...

const mitk::TimeGeometry *	GetUpdatedTimeSliceGeometry ()
	Return the TimeGeometry of the data. More...

virtual void	Expand (unsigned int timeSteps)
	Expands the TimeGeometry to a number of TimeSteps. More...

const mitk::BaseGeometry *	GetUpdatedGeometry (int t=0)
	Return the BaseGeometry of the data at time t. More...

mitk::BaseGeometry *	GetGeometry (int t=0) const
	Return the geometry, which is a TimeGeometry, of the data as non-const pointer. More...

void	UpdateOutputInformation () override
	Update the information for this BaseData (the geometry in particular) so that it can be used as an output of a BaseProcess. More...

void	CopyInformation (const itk::DataObject *data) override
	Copy information from the specified data set. More...

virtual bool	IsInitialized () const
	Check whether the data has been initialized, i.e., at least the Geometry and other header data has been set. More...

virtual void	Clear ()
	Calls ClearData() and InitializeEmpty();. More...

virtual bool	IsEmptyTimeStep (unsigned int t) const
	Check whether object contains data (at a specified time), e.g., a set of points may be empty. More...

void	ExecuteOperation (Operation *operation) override
	overwrite if the Data can be called by an Interactor (StateMachine). More...

virtual void	SetGeometry (BaseGeometry *aGeometry3D)
	Set the BaseGeometry of the data, which will be referenced (not copied!). Assumes the data object has only 1 time step ( is a 3D object ) and creates a new TimeGeometry which saves the given BaseGeometry. If an TimeGeometry has already been set for the object, it will be replaced after calling this function. More...

virtual void	SetTimeGeometry (TimeGeometry *geometry)
	Set the TimeGeometry of the data, which will be referenced (not copied!). More...

virtual void	SetClonedGeometry (const BaseGeometry *aGeometry3D)
	Set a clone of the provided Geometry as Geometry of the data. Assumes the data object has only 1 time step ( is a 3D object ) and creates a new TimeGeometry. If an TimeGeometry has already been set for the object, it will be replaced after calling this function. More...

virtual void	SetClonedTimeGeometry (const TimeGeometry *geometry)
	Set a clone of the provided TimeGeometry as TimeGeometry of the data. More...

virtual void	SetClonedGeometry (const BaseGeometry *aGeometry3D, unsigned int time)
	Set a clone of the provided geometry as BaseGeometry of a given time step. More...

mitk::PropertyList::Pointer	GetPropertyList () const
	Get the data's property list. More...

void	SetPropertyList (PropertyList *propertyList)
	Set the data's property list. More...

mitk::BaseProperty::Pointer	GetProperty (const char *propertyKey) const
	Get the property (instance of BaseProperty) with key propertyKey from the PropertyList, and set it to this, respectively;. More...

void	SetProperty (const char propertyKey, BaseProperty property)

virtual void	SetOrigin (const Point3D &origin)
	Convenience method for setting the origin of the BaseGeometry instances of all time steps. More...

itk::SmartPointer< mitk::BaseDataSource >	GetSource () const
	Get the process object that generated this data object. More...

unsigned int	GetTimeSteps () const
	Get the number of time steps from the TimeGeometry As the base data has not a data vector given by itself, the number of time steps is defined over the time sliced geometry. In sub classes, a better implementation could be over the length of the data vector. More...

unsigned long	GetMTime () const override
	Get the modified time of the last change of the contents this data object or its geometry. More...

void	Graft (const DataObject *) override

Public Member Functions inherited from mitk::OperationActor
	itkTypeMacroNoParent (OperationActor) virtual ~OperationActor()

Public Member Functions inherited from mitk::Identifiable
	Identifiable ()

	Identifiable (const UIDType &uid)

	Identifiable (const Identifiable &)=delete

	Identifiable (Identifiable &&) noexcept

virtual	~Identifiable ()

Identifiable &	operator= (const Identifiable &)=delete

Identifiable &	operator= (Identifiable &&other) noexcept

UIDType	GetUID () const
	Get unique ID of an object. More...

Public Member Functions inherited from mitk::IPropertyOwner
	~IPropertyOwner () override

Public Member Functions inherited from mitk::IPropertyProvider
virtual	~IPropertyProvider ()

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from mitk::BaseData
static const char *	GetStaticNameOfClass ()

Additional Inherited Members
Public Types inherited from mitk::BaseData
typedef BaseData	Self

typedef itk::DataObject	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

Public Types inherited from mitk::Identifiable
using	UIDType = std::string

Protected Member Functions inherited from mitk::BaseData
	BaseData ()

	BaseData (const BaseData &other)

	~BaseData () override

virtual void	InitializeTimeGeometry (unsigned int timeSteps=1)
	Initialize the TimeGeometry for a number of time steps. The TimeGeometry is initialized empty and evenly timed. In many cases it will be necessary to overwrite this in sub-classes. More...

virtual void	InitializeTimeSlicedGeometry (unsigned int timeSteps=1)
	Initialize the TimeGeometry for a number of time steps. The TimeGeometry is initialized empty and evenly timed. In many cases it will be necessary to overwrite this in sub-classes. More...

virtual void	ClearData ()
	reset to non-initialized state, release memory More...

virtual void	InitializeEmpty ()
	Pure virtual; Must be used in subclasses to get a data object to a valid state. Should at least create one empty object and call Superclass::InitializeTimeGeometry() to ensure an existing valid geometry. More...

void	PrintSelf (std::ostream &os, itk::Indent indent) const override

Protected Attributes inherited from mitk::BaseData
bool	m_LastRequestedRegionWasOutsideOfTheBufferedRegion

unsigned int	m_SourceOutputIndexDuplicate

bool	m_Initialized

Detailed Description

Definition at line 24 of file mitkIntensityQuantifier.h.

Constructor & Destructor Documentation

◆ IntensityQuantifier()

mitk::IntensityQuantifier::IntensityQuantifier ( )

Definition at line 72 of file mitkIntensityQuantifier.cpp.

Member Function Documentation

◆ Clone()

Pointer mitk::IntensityQuantifier::Clone ( ) const

◆ GetBins()

virtual unsigned int mitk::IntensityQuantifier::GetBins ( ) const

virtual

◆ GetBinsize()

virtual double mitk::IntensityQuantifier::GetBinsize ( ) const

virtual

◆ GetInitialized()

virtual bool mitk::IntensityQuantifier::GetInitialized ( ) const

virtual

◆ GetMaximum()

virtual double mitk::IntensityQuantifier::GetMaximum ( ) const

virtual

◆ GetMinimum()

virtual double mitk::IntensityQuantifier::GetMinimum ( ) const

virtual

◆ IndexToMaximumIntensity()

double mitk::IntensityQuantifier::IndexToMaximumIntensity ( unsigned int index )

Definition at line 192 of file mitkIntensityQuantifier.cpp.

◆ IndexToMeanIntensity()

double mitk::IntensityQuantifier::IndexToMeanIntensity ( unsigned int index )

Definition at line 187 of file mitkIntensityQuantifier.cpp.

◆ IndexToMinimumIntensity()

double mitk::IntensityQuantifier::IndexToMinimumIntensity ( unsigned int index )

Definition at line 182 of file mitkIntensityQuantifier.cpp.

◆ InitializeByBinsizeAndBins()

void mitk::IntensityQuantifier::InitializeByBinsizeAndBins	(	double	minimum,
		unsigned int	bins,
		double	binsize
	)

Definition at line 88 of file mitkIntensityQuantifier.cpp.

◆ InitializeByBinsizeAndMaximum()

void mitk::IntensityQuantifier::InitializeByBinsizeAndMaximum	(	double	minimum,
		double	maximum,
		double	binsize
	)

Definition at line 96 of file mitkIntensityQuantifier.cpp.

Referenced by InitializeByImageAndBinsize(), InitializeByImageAndBinsizeAndMaximum(), InitializeByImageAndBinsizeAndMinimum(), InitializeByImageRegionAndBinsize(), InitializeByImageRegionAndBinsizeAndMaximum(), and InitializeByImageRegionAndBinsizeAndMinimum().

◆ InitializeByImage()

void mitk::IntensityQuantifier::InitializeByImage	(	mitk::Image::Pointer	image,
		unsigned int	bins
	)

Definition at line 104 of file mitkIntensityQuantifier.cpp.

References AccessByItk_2, CalculateImageMinMax(), and InitializeByMinimumMaximum().

◆ InitializeByImageAndBinsize()

void mitk::IntensityQuantifier::InitializeByImageAndBinsize	(	mitk::Image::Pointer	image,
		double	binsize
	)

Definition at line 140 of file mitkIntensityQuantifier.cpp.

References AccessByItk_2, CalculateImageMinMax(), and InitializeByBinsizeAndMaximum().

◆ InitializeByImageAndBinsizeAndMaximum()

void mitk::IntensityQuantifier::InitializeByImageAndBinsizeAndMaximum	(	mitk::Image::Pointer	image,
		double	maximum,
		double	binsize
	)

Definition at line 152 of file mitkIntensityQuantifier.cpp.

References AccessByItk_2, CalculateImageMinMax(), and InitializeByBinsizeAndMaximum().

◆ InitializeByImageAndBinsizeAndMinimum()

void mitk::IntensityQuantifier::InitializeByImageAndBinsizeAndMinimum	(	mitk::Image::Pointer	image,
		double	minimum,
		double	binsize
	)

Definition at line 146 of file mitkIntensityQuantifier.cpp.

References AccessByItk_2, CalculateImageMinMax(), and InitializeByBinsizeAndMaximum().

◆ InitializeByImageAndMaximum()

void mitk::IntensityQuantifier::InitializeByImageAndMaximum	(	mitk::Image::Pointer	image,
		double	maximum,
		unsigned int	bins
	)

Definition at line 116 of file mitkIntensityQuantifier.cpp.

References AccessByItk_2, CalculateImageMinMax(), and InitializeByMinimumMaximum().

◆ InitializeByImageAndMinimum()

void mitk::IntensityQuantifier::InitializeByImageAndMinimum	(	mitk::Image::Pointer	image,
		double	minimum,
		unsigned int	bins
	)

Definition at line 110 of file mitkIntensityQuantifier.cpp.

References AccessByItk_2, CalculateImageMinMax(), and InitializeByMinimumMaximum().

◆ InitializeByImageRegion()

void mitk::IntensityQuantifier::InitializeByImageRegion	(	mitk::Image::Pointer	image,
		mitk::Image::Pointer	mask,
		unsigned int	bins
	)

Definition at line 122 of file mitkIntensityQuantifier.cpp.

References AccessByItk_3, CalculateImageRegionMinMax(), and InitializeByMinimumMaximum().

◆ InitializeByImageRegionAndBinsize()

void mitk::IntensityQuantifier::InitializeByImageRegionAndBinsize	(	mitk::Image::Pointer	image,
		mitk::Image::Pointer	mask,
		double	binsize
	)

Definition at line 158 of file mitkIntensityQuantifier.cpp.

References AccessByItk_3, CalculateImageRegionMinMax(), and InitializeByBinsizeAndMaximum().

◆ InitializeByImageRegionAndBinsizeAndMaximum()

void mitk::IntensityQuantifier::InitializeByImageRegionAndBinsizeAndMaximum	(	mitk::Image::Pointer	image,
		mitk::Image::Pointer	mask,
		double	maximum,
		double	binsize
	)

Definition at line 170 of file mitkIntensityQuantifier.cpp.

References AccessByItk_3, CalculateImageRegionMinMax(), and InitializeByBinsizeAndMaximum().

◆ InitializeByImageRegionAndBinsizeAndMinimum()

void mitk::IntensityQuantifier::InitializeByImageRegionAndBinsizeAndMinimum	(	mitk::Image::Pointer	image,
		mitk::Image::Pointer	mask,
		double	minimum,
		double	binsize
	)

Definition at line 164 of file mitkIntensityQuantifier.cpp.

References AccessByItk_3, CalculateImageRegionMinMax(), and InitializeByBinsizeAndMaximum().

◆ InitializeByImageRegionAndMaximum()

void mitk::IntensityQuantifier::InitializeByImageRegionAndMaximum	(	mitk::Image::Pointer	image,
		mitk::Image::Pointer	mask,
		double	maximum,
		unsigned int	bins
	)

Definition at line 134 of file mitkIntensityQuantifier.cpp.

References AccessByItk_3, CalculateImageRegionMinMax(), and InitializeByMinimumMaximum().

◆ InitializeByImageRegionAndMinimum()

void mitk::IntensityQuantifier::InitializeByImageRegionAndMinimum	(	mitk::Image::Pointer	image,
		mitk::Image::Pointer	mask,
		double	minimum,
		unsigned int	bins
	)

Definition at line 128 of file mitkIntensityQuantifier.cpp.

References AccessByItk_3, CalculateImageRegionMinMax(), and InitializeByMinimumMaximum().

◆ InitializeByMinimumMaximum()

void mitk::IntensityQuantifier::InitializeByMinimumMaximum	(	double	minimum,
		double	maximum,
		unsigned int	bins
	)

Definition at line 80 of file mitkIntensityQuantifier.cpp.

Referenced by InitializeByImage(), InitializeByImageAndMaximum(), InitializeByImageAndMinimum(), InitializeByImageRegion(), InitializeByImageRegionAndMaximum(), and InitializeByImageRegionAndMinimum().

◆ IntensityToIndex()

unsigned int mitk::IntensityQuantifier::IntensityToIndex ( double intensity )

Definition at line 176 of file mitkIntensityQuantifier.cpp.

◆ IsEmpty()

bool mitk::IntensityQuantifier::IsEmpty ( ) const

inlineoverridevirtual

Check whether object contains data (at least at one point in time), e.g., a set of points may be empty.

Warning: Returns IsInitialized()==false by default for compatibility reasons. Override in sub-classes that support distinction between empty/non-empty state.

Reimplemented from mitk::BaseData.

Definition at line 70 of file mitkIntensityQuantifier.h.

◆ mitkClassMacro()

mitk::IntensityQuantifier::mitkClassMacro	(	IntensityQuantifier	,
		BaseData
	)

◆ New()

static Pointer mitk::IntensityQuantifier::New ( )

static

Referenced by mitk::AbstractGlobalImageFeature::InitializeQuantifier().

◆ RequestedRegionIsOutsideOfTheBufferedRegion()

bool mitk::IntensityQuantifier::RequestedRegionIsOutsideOfTheBufferedRegion ( )

inlineoverridevirtual

Determine whether the RequestedRegion is outside of the BufferedRegion.

This method returns true if the RequestedRegion is outside the BufferedRegion (true if at least one pixel is outside). This is used by the pipeline mechanism to determine whether a filter needs to re-execute in order to satisfy the current request. If the current RequestedRegion is already inside the BufferedRegion from the previous execution (and the current filter is up to date), then a given filter does not need to re-execute

Implements mitk::BaseData.

Definition at line 65 of file mitkIntensityQuantifier.h.

◆ SetRequestedRegion()

void mitk::IntensityQuantifier::SetRequestedRegion ( const itk::DataObject * data )

inlineoverridevirtual

Set the requested region from this data object to match the requested region of the data object passed in as a parameter.

This method is implemented in the concrete subclasses of BaseData.

Implements mitk::BaseData.

Definition at line 67 of file mitkIntensityQuantifier.h.

◆ SetRequestedRegionToLargestPossibleRegion()

void mitk::IntensityQuantifier::SetRequestedRegionToLargestPossibleRegion ( )

inlineoverridevirtual

Set the RequestedRegion to the LargestPossibleRegion.

This forces a filter to produce all of the output in one execution (i.e. not streaming) on the next call to Update().

Implements mitk::BaseData.

Definition at line 64 of file mitkIntensityQuantifier.h.

◆ VerifyRequestedRegion()

bool mitk::IntensityQuantifier::VerifyRequestedRegion ( )

inlineoverridevirtual

Verify that the RequestedRegion is within the LargestPossibleRegion.

If the RequestedRegion is not within the LargestPossibleRegion, then the filter cannot possibly satisfy the request. This method returns true if the request can be satisfied (even if it will be necessary to process the entire LargestPossibleRegion) and returns false otherwise. This method is used by PropagateRequestedRegion(). PropagateRequestedRegion() throws a InvalidRequestedRegionError exception if the requested region is not within the LargestPossibleRegion.

Implements mitk::BaseData.

Definition at line 66 of file mitkIntensityQuantifier.h.

The documentation for this class was generated from the following files:

Public Member Functions

Static Public Member Functions

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ IntensityQuantifier()

Member Function Documentation

◆ Clone()

◆ GetBins()

◆ GetBinsize()

◆ GetInitialized()

◆ GetMaximum()

◆ GetMinimum()

◆ IndexToMaximumIntensity()

◆ IndexToMeanIntensity()

◆ IndexToMinimumIntensity()

◆ InitializeByBinsizeAndBins()

◆ InitializeByBinsizeAndMaximum()

◆ InitializeByImage()

◆ InitializeByImageAndBinsize()

◆ InitializeByImageAndBinsizeAndMaximum()

◆ InitializeByImageAndBinsizeAndMinimum()

◆ InitializeByImageAndMaximum()

◆ InitializeByImageAndMinimum()

◆ InitializeByImageRegion()

◆ InitializeByImageRegionAndBinsize()

◆ InitializeByImageRegionAndBinsizeAndMaximum()

◆ InitializeByImageRegionAndBinsizeAndMinimum()

◆ InitializeByImageRegionAndMaximum()

◆ InitializeByImageRegionAndMinimum()

◆ InitializeByMinimumMaximum()

◆ IntensityToIndex()

◆ IsEmpty()

◆ mitkClassMacro()

◆ New()

◆ RequestedRegionIsOutsideOfTheBufferedRegion()

◆ SetRequestedRegion()

◆ SetRequestedRegionToLargestPossibleRegion()

◆ VerifyRequestedRegion()