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| mitkClassMacro (nnUNetTool, AutoMLSegmentationWithPreviewTool) |
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Pointer | Clone () const |
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const char ** | GetXPM () const override |
| Returns an icon in the XPM format. More...
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const char * | GetName () const override |
| Returns the name of this tool. Make it short! More...
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us::ModuleResource | GetIconResource () const override |
| Returns the tool button icon of the tool wrapped by a usModuleResource. More...
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void | Activated () override |
| Called when the tool gets activated. More...
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virtual void | SetnnUNetDirectory (std::string _arg) |
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virtual std::string | GetnnUNetDirectory () const |
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virtual void | SetModelDirectory (std::string _arg) |
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virtual std::string | GetModelDirectory () const |
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virtual void | SetPythonPath (std::string _arg) |
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virtual std::string | GetPythonPath () const |
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virtual void | SetMitkTempDir (std::string _arg) |
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virtual std::string | GetMitkTempDir () const |
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virtual void | SetPostProcessingJsonDirectory (std::string _arg) |
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virtual std::string | GetPostProcessingJsonDirectory () const |
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virtual void | SetMixedPrecision (bool _arg) |
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virtual bool | GetMixedPrecision () const |
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virtual void | MixedPrecisionOn () |
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virtual void | MixedPrecisionOff () |
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virtual void | SetMirror (bool _arg) |
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virtual bool | GetMirror () const |
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virtual void | MirrorOn () |
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virtual void | MirrorOff () |
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virtual void | SetMultiModal (bool _arg) |
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virtual bool | GetMultiModal () const |
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virtual void | MultiModalOn () |
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virtual void | MultiModalOff () |
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virtual void | SetNoPip (bool _arg) |
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virtual bool | GetNoPip () const |
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virtual void | NoPipOn () |
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virtual void | NoPipOff () |
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virtual void | SetEnsemble (bool _arg) |
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virtual bool | GetEnsemble () const |
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virtual void | EnsembleOn () |
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virtual void | EnsembleOff () |
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virtual void | SetPredict (bool _arg) |
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virtual bool | GetPredict () const |
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virtual void | PredictOn () |
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virtual void | PredictOff () |
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virtual void | SetGpuId (unsigned int _arg) |
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virtual unsigned int | GetGpuId () const |
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void | RenderOutputBuffer () |
| Renders the output LabelSetImage. To called in the main thread. More...
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LabelSetImage::Pointer | GetOutputBuffer () |
| Get the Output Buffer object. More...
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void | ClearOutputBuffer () |
| Sets the outputBuffer to nullptr. More...
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mitk::DataStorage * | GetDataStorage () |
| Returns the DataStorage from the ToolManager. More...
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mitk::DataNode * | GetRefNode () |
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void | SetOutputBuffer (LabelSetImage::Pointer) |
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| mitkClassMacro (AutoMLSegmentationWithPreviewTool, AutoSegmentationWithPreviewTool) |
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void | Deactivated () override |
| Called when the tool gets deactivated. More...
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void | SetSelectedLabels (const SelectedLabelVectorType ®ions) |
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SelectedLabelVectorType | GetSelectedLabels () const |
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const LabelSetImage * | GetMLPreview () const |
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| mitkClassMacro (AutoSegmentationWithPreviewTool, AutoSegmentationTool) |
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void | Deactivated () override |
| Called when the tool gets deactivated. More...
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void | ConfirmSegmentation () |
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virtual void | SetCreateAllTimeSteps (bool _arg) |
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virtual bool | GetCreateAllTimeSteps () |
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virtual void | CreateAllTimeStepsOn () |
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virtual void | CreateAllTimeStepsOff () |
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virtual void | SetKeepActiveAfterAccept (bool _arg) |
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virtual bool | GetKeepActiveAfterAccept () |
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virtual void | KeepActiveAfterAcceptOn () |
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virtual void | KeepActiveAfterAcceptOff () |
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virtual void | SetIsTimePointChangeAware (bool _arg) |
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virtual bool | GetIsTimePointChangeAware () |
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virtual void | IsTimePointChangeAwareOn () |
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virtual void | IsTimePointChangeAwareOff () |
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virtual void | SetResetsToEmptyPreview (bool _arg) |
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virtual bool | GetResetsToEmptyPreview () |
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virtual void | ResetsToEmptyPreviewOn () |
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virtual void | ResetsToEmptyPreviewOff () |
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bool | CanHandle (const BaseData *referenceData, const BaseData *workingData) const override |
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void | UpdatePreview (bool ignoreLazyPreviewSetting=false) |
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bool | IsUpdating () const |
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| mitkClassMacro (AutoSegmentationTool, Tool) |
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void | SetOverwriteExistingSegmentation (bool overwrite) |
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std::string | GetCurrentSegmentationName () |
| Gets the name of the currently selected segmentation node. More...
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virtual DataNode * | GetTargetSegmentationNode () const |
| Depending on the selected mode either returns the currently selected segmentation node or (if overwrite mode is false) creates a new one from the selected reference data. More...
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| mitkClassMacro (Tool, EventStateMachine) |
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virtual std::string | GetIconPath () const |
| Returns the path of an icon. More...
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virtual us::ModuleResource | GetCursorIconResource () const |
| Returns the path of a cursor icon. More...
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virtual void | InitializeStateMachine () |
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virtual itk::Object::Pointer | GetGUI (const std::string &toolkitPrefix, const std::string &toolkitPostfix) |
| Interface for GUI creation. More...
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virtual NodePredicateBase::ConstPointer | GetReferenceDataPreference () const |
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virtual NodePredicateBase::ConstPointer | GetWorkingDataPreference () const |
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DataNode::Pointer | CreateEmptySegmentationNode (const Image *original, const std::string &organName, const mitk::Color &color) const |
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DataNode::Pointer | CreateSegmentationNode (Image *image, const std::string &organName, const mitk::Color &color) const |
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virtual std::vector< std::string > | GetClassHierarchy () const override |
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virtual const char * | GetClassName () const |
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bool | LoadStateMachine (const std::string &filename, const us::Module *module=nullptr) |
| Loads XML resource. More...
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bool | HandleEvent (InteractionEvent *event, DataNode *dataNode) |
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void | EnableUndo (bool enable) |
| Enables or disabled Undo. More...
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void | EnableInteraction (bool enable) |
| Enables/disables the state machine. In un-enabled state it won't react to any events. More...
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Public Member Functions inherited from mitk::InteractionEventHandler |
bool | SetEventConfig (const std::string &filename, const us::Module *module=nullptr) |
| Loads a configuration from an XML resource. More...
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bool | SetEventConfig (const EventConfig &config) |
| Loads a configuration from an EventConfig object. More...
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EventConfig | GetEventConfig () const |
| Returns the current configuration. More...
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bool | AddEventConfig (const std::string &filename, const us::Module *module=nullptr) |
| This method extends the configuration. More...
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bool | AddEventConfig (const EventConfig &config) |
| This method extends the configuration. The configuration from the EventConfig object is loaded and only the ones conflicting are replaced by the new one. This way several configurations can be combined. More...
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| InteractionEventObserver () |
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virtual | ~InteractionEventObserver () |
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void | Disable () |
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void | Enable () |
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bool | IsEnabled () const |
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| nnUNetTool () |
| Construct a new nnUNet Tool object and temp directory. More...
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| ~nnUNetTool () |
| Destroy the nnUNet Tool object and deletes the temp directory. More...
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LabelSetImage::Pointer | ComputeMLPreview (const Image *inputAtTimeStep, TimeStepType timeStep) override |
| Overriden method from the tool manager to execute the segmentation Implementation: More...
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| AutoMLSegmentationWithPreviewTool () |
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| ~AutoMLSegmentationWithPreviewTool ()=default |
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void | UpdateCleanUp () override |
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void | DoUpdatePreview (const Image *inputAtTimeStep, const Image *oldSegAtTimeStep, Image *previewImage, TimeStepType timeStep) override |
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virtual void | SetNodeProperties (LabelSetImage::Pointer) |
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virtual void | InitiateToolByInput () |
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virtual void | UpdatePrepare () |
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| AutoSegmentationWithPreviewTool (bool lazyDynamicPreviews=false) |
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| AutoSegmentationWithPreviewTool (bool lazyDynamicPreviews, const char *interactorType, const us::Module *interactorModule=nullptr) |
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| ~AutoSegmentationWithPreviewTool () override |
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Image * | GetPreviewSegmentation () |
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DataNode * | GetPreviewSegmentationNode () |
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const Image * | GetSegmentationInput () const |
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const Image * | GetReferenceData () const |
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void | ResetPreviewNode () |
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void | ResetPreviewContent () |
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void | ResetPreviewContentAtTimeStep (unsigned int timeStep) |
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TimePointType | GetLastTimePointOfUpdate () const |
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virtual Label::PixelType | GetUserDefinedActiveLabel () const |
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virtual void | SetWorkingPlaneGeometry (PlaneGeometry *_arg) |
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virtual const PlaneGeometry * | GetWorkingPlaneGeometry () |
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| AutoSegmentationTool () |
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| AutoSegmentationTool (const char *interactorType, const us::Module *interactorModule=nullptr) |
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| ~AutoSegmentationTool () override |
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const char * | GetGroup () const override |
| Name of a group. More...
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void | EnsureTargetSegmentationNodeInDataStorage () const |
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virtual void | SetToolManager (ToolManager *) |
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ToolManager * | GetToolManager () const |
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mitk::DataStorage * | GetDataStorage () const |
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void | ConnectActionsAndFunctions () override |
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| Tool (const char *, const us::Module *interactorModule=nullptr) |
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| ~Tool () override |
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void | Notify (InteractionEvent *interactionEvent, bool isHandled) override |
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bool | FilterEvents (InteractionEvent *, DataNode *) override |
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| EventStateMachine () |
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| ~EventStateMachine () override |
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void | AddActionFunction (const std::string &action, TActionFunctor *functor) |
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void | AddActionFunction (const std::string &action, const ActionFunctionDelegate &delegate) |
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void | AddConditionFunction (const std::string &condition, const ConditionFunctionDelegate &delegate) |
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StateMachineState * | GetCurrentState () const |
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void | ResetToStartState () |
| ResetToStartState Reset state machine to it initial starting state. More...
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virtual bool | CheckCondition (const StateMachineCondition &condition, const InteractionEvent *interactionEvent) |
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virtual void | ExecuteAction (StateMachineAction *action, InteractionEvent *interactionEvent) |
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void | SetMouseCursor (const char *xpm[], int hotspotX, int hotspotY) |
| Sets the specified mouse cursor. More...
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void | ResetMouseCursor () |
| Resets the mouse cursor (if modified by the SlicesCoordinator) to its original state. More...
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StateMachineTransition * | GetExecutableTransition (InteractionEvent *event) |
| Returns the executable transition for the given event. More...
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Protected Member Functions inherited from mitk::InteractionEventHandler |
| InteractionEventHandler () |
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| ~InteractionEventHandler () override |
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PropertyList::Pointer | GetAttributes () const |
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std::string | MapToEventVariant (InteractionEvent *interactionEvent) |
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virtual void | ConfigurationChanged () |
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nnUNet segmentation tool.
- Warning
- Only to be instantiated by mitk::ToolManager.
Definition at line 68 of file mitknnUnetTool.h.