Supplies a 3D surface from pre-processed segmentation. More...
#include <mitkManualSegmentationToSurfaceFilter.h>
Public Types | |
| typedef double | vtkDouble |
 Public Types inherited from mitk::ImageToSurfaceFilter | |
| enum | DecimationType { NoDecimation, DecimatePro, QuadricDecimation } |
| typedef ImageToSurfaceFilter | Self |
| typedef SurfaceSource | Superclass |
| typedef itk::SmartPointer< Self > | Pointer |
| typedef itk::SmartPointer< const Self > | ConstPointer |
| Public Types inherited from mitk::SurfaceSource | |
| typedef SurfaceSource | Self |
| typedef BaseDataSource | Superclass |
| typedef itk::SmartPointer< Self > | Pointer |
| typedef itk::SmartPointer< const Self > | ConstPointer |
| typedef Surface | OutputType |
| Public Types inherited from mitk::BaseDataSource | |
| typedef BaseDataSource | Self |
| typedef itk::ProcessObject | Superclass |
| typedef itk::SmartPointer< Self > | Pointer |
| typedef itk::SmartPointer< const Self > | ConstPointer |
| typedef BaseData | OutputType |
| typedef itk::DataObject::DataObjectIdentifierType | DataObjectIdentifierType |
Public Member Functions | |
| mitkClassMacro (ManualSegmentationToSurfaceFilter, ImageToSurfaceFilter) | |
| void | GenerateData () override |
| Pointer | Clone () const |
| virtual void | SetMedianFilter3D (bool _arg) |
| virtual bool | GetMedianFilter3D () const |
| virtual void | MedianFilter3DOn () |
| virtual void | MedianFilter3DOff () |
| virtual void | SetInterpolation (bool _arg) |
| virtual bool | GetInterpolation () const |
| virtual void | InterpolationOn () |
| virtual void | InterpolationOff () |
| virtual void | SetUseGaussianImageSmooth (bool _arg) |
| virtual bool | GetUseGaussianImageSmooth () const |
| virtual void | UseGaussianImageSmoothOn () |
| virtual void | UseGaussianImageSmoothOff () |
| virtual void | SetGaussianStandardDeviation (double _arg) |
| virtual double | GetGaussianStandardDeviation () const |
| void | SetMedianKernelSize (int x, int y, int z) |
| virtual int | GetMedianKernelSizeX () const |
| virtual int | GetMedianKernelSizeY () const |
| virtual int | GetMedianKernelSizeZ () const |
| void | SetInterpolation (vtkDouble x, vtkDouble y, vtkDouble z) |
| Public Member Functions inherited from mitk::ImageToSurfaceFilter | |
| virtual std::vector< std::string > | GetClassHierarchy () const override |
| virtual const char * | GetClassName () const |
| Pointer | Clone () const |
| void | GenerateData () override |
| void | GenerateOutputInformation () override |
| const mitk::Image * | GetInput (void) |
| virtual void | SetInput (const mitk::Image *image) |
| void | SetSmoothIteration (int smoothIteration) |
| void | SetSmoothRelaxation (float smoothRelaxation) |
| virtual void | SetThreshold (ScalarType _arg) |
| virtual ScalarType | GetThreshold () const |
| virtual void | SetSmooth (bool _arg) |
| virtual void | SmoothOn () |
| virtual void | SmoothOff () |
| virtual bool | GetSmooth () const |
| virtual DecimationType | GetDecimate () const |
| virtual void | SetDecimate (DecimationType _arg) |
| virtual void | SetTargetReduction (float _arg) |
| virtual float | GetTargetReduction () const |
| template<class T1 , class T2 , class T3 > | |
| void | mitkVtkLinearTransformPoint (T1 matrix[4][4], T2 in[3], T3 out[3]) |
| Public Member Functions inherited from mitk::SurfaceSource | |
| Pointer | Clone () const |
| OutputType * | GetOutput () |
| const OutputType * | GetOutput () const |
| OutputType * | GetOutput (DataObjectPointerArraySizeType idx) |
| const OutputType * | GetOutput (DataObjectPointerArraySizeType idx) const |
| itk::DataObject::Pointer | MakeOutput (DataObjectPointerArraySizeType idx) override |
| itk::DataObject::Pointer | MakeOutput (const DataObjectIdentifierType &name) override |
| Public Member Functions inherited from mitk::BaseDataSource | |
| OutputType * | GetOutput () |
| const OutputType * | GetOutput () const |
| OutputType * | GetOutput (DataObjectPointerArraySizeType idx) |
| const OutputType * | GetOutput (DataObjectPointerArraySizeType idx) const |
| virtual void | GraftOutput (OutputType *output) |
| Graft the specified BaseData onto this BaseDataSource's output. More... | |
| virtual void | GraftOutput (const DataObjectIdentifierType &key, OutputType *output) |
| virtual void | GraftNthOutput (unsigned int idx, OutputType *output) |
| Graft the specified base data object onto this BaseDataSource's idx'th output. More... | |
| bool | Updating () const |
| Access itk::ProcessObject::m_Updating. More... | |
Static Public Member Functions | |
| static Pointer | New () |
| Static Public Member Functions inherited from mitk::ImageToSurfaceFilter | |
| static const char * | GetStaticNameOfClass () |
| static Pointer | New () |
| Static Public Member Functions inherited from mitk::SurfaceSource | |
| static const char * | GetStaticNameOfClass () |
| static Pointer | New () |
| Static Public Member Functions inherited from mitk::BaseDataSource | |
| static const char * | GetStaticNameOfClass () |
Protected Member Functions | |
| ManualSegmentationToSurfaceFilter () | |
| ~ManualSegmentationToSurfaceFilter () override | |
| Protected Member Functions inherited from mitk::ImageToSurfaceFilter | |
| ImageToSurfaceFilter () | |
| ~ImageToSurfaceFilter () override | |
| void | CreateSurface (int time, vtkImageData *vtkimage, mitk::Surface *surface, const ScalarType threshold) |
| Protected Member Functions inherited from mitk::SurfaceSource | |
| SurfaceSource () | |
| ~SurfaceSource () override | |
| Protected Member Functions inherited from mitk::BaseDataSource | |
| BaseDataSource () | |
| ~BaseDataSource () override | |
Protected Attributes | |
| bool | m_MedianFilter3D |
| int | m_MedianKernelSizeX |
| int | m_MedianKernelSizeY |
| int | m_MedianKernelSizeZ |
| bool | m_UseGaussianImageSmooth |
| double | m_GaussianStandardDeviation |
| bool | m_Interpolation |
| vtkDouble | m_InterpolationX |
| vtkDouble | m_InterpolationY |
| vtkDouble | m_InterpolationZ |
| Protected Attributes inherited from mitk::ImageToSurfaceFilter | |
| bool | m_Smooth |
| DecimationType | m_Decimate |
| ScalarType | m_Threshold |
| float | m_TargetReduction |
| int | m_SmoothIteration |
| float | m_SmoothRelaxation |
Additional Inherited Members | |
| Static Protected Member Functions inherited from mitk::BaseDataSource | |
| static Pointer | New () |
Detailed Description
Supplies a 3D surface from pre-processed segmentation.
The resulting surface depends on a filter pipeline based on vtkMedian (1) and a Gaussian filter with vtkImageGaussianSmooth (2). All voxel can be changed to an isotropic representation of the image (ATTENTION: the number of voxels in the image will change). The resulting isotropic image has 1mm isotropic voxel by default. But can be varied freely.
Definition at line 40 of file mitkManualSegmentationToSurfaceFilter.h.
Member Typedef Documentation
◆ vtkDouble
| typedef double mitk::ManualSegmentationToSurfaceFilter::vtkDouble |
Definition at line 45 of file mitkManualSegmentationToSurfaceFilter.h.
Constructor & Destructor Documentation
◆ ManualSegmentationToSurfaceFilter()
|
protected |
◆ ~ManualSegmentationToSurfaceFilter()
|
overrideprotected |
Member Function Documentation
◆ Clone()
| Pointer mitk::ManualSegmentationToSurfaceFilter::Clone | ( | ) | const |
◆ GenerateData()
|
override |
Will pre-process a segmentation voxelwise. The segmentation can use a hole fill relating a median filter and smooth by a Gaussian filter. The image can be interpolated to an isotropic image. By default every filter is disabled. This method calls CreateSurface from mitkImageToSurfaceFilter and does not need a manual call since we use Update().
◆ GetGaussianStandardDeviation()
|
virtual |
Returns the standard deviation of the Gaussian filter which will be used when filter is enabled.
◆ GetInterpolation()
|
virtual |
Returns activation state of interpolation filter.
◆ GetMedianFilter3D()
|
virtual |
Return state if median filter is enabled.
◆ GetMedianKernelSizeX()
|
virtual |
Returns the kernel size in the first direction.
◆ GetMedianKernelSizeY()
|
virtual |
Returns the kernel size in the second direction.
◆ GetMedianKernelSizeZ()
|
virtual |
Returns the kernel size in the third direction.
◆ GetUseGaussianImageSmooth()
|
virtual |
Returns activation state of standard deviation filter.
◆ InterpolationOff()
|
virtual |
◆ InterpolationOn()
|
virtual |
Enable the interpolation filter (second filter in pipeline) for isotropic voxel.
◆ MedianFilter3DOff()
|
virtual |
◆ MedianFilter3DOn()
|
virtual |
Enable the median filter (first filter in pipeline).
◆ mitkClassMacro()
| mitk::ManualSegmentationToSurfaceFilter::mitkClassMacro | ( | ManualSegmentationToSurfaceFilter | , |
| ImageToSurfaceFilter | |||
| ) |
◆ New()
|
static |
◆ SetGaussianStandardDeviation()
|
virtual |
Set standard deviation for Gaussian Filter.
- Parameters
-
_arg by default 1.5
◆ SetInterpolation() [1/2]
|
virtual |
Supplies a method to enable Interpolation.
◆ SetInterpolation() [2/2]
| void mitk::ManualSegmentationToSurfaceFilter::SetInterpolation | ( | vtkDouble | x, |
| vtkDouble | y, | ||
| vtkDouble | z | ||
| ) |
Set the values for Spacing in X, Y and Z-Dimension
◆ SetMedianFilter3D()
|
virtual |
Supplies a method for setting median filter by a bool value.
◆ SetMedianKernelSize()
| void mitk::ManualSegmentationToSurfaceFilter::SetMedianKernelSize | ( | int | x, |
| int | y, | ||
| int | z | ||
| ) |
Set the Kernel for Median3DFilter. By default kernel is set to 3x3x3. If you choose '1' nothing will be processed in this direction.
◆ SetUseGaussianImageSmooth()
|
virtual |
Supplies a method for Gaussian filter (third filter in pipeline).
◆ UseGaussianImageSmoothOff()
|
virtual |
◆ UseGaussianImageSmoothOn()
|
virtual |
Enables Gaussian image smooth. As well the threshold for the CreateSurface() method will raise the threshold to 49 and changes the image range set from 0 to 100. It is made for reasons in binary images to prevent conflicts with the used filter. There are better results for dividing fore- and background.
Member Data Documentation
◆ m_GaussianStandardDeviation
|
protected |
Definition at line 155 of file mitkManualSegmentationToSurfaceFilter.h.
◆ m_Interpolation
|
protected |
Definition at line 156 of file mitkManualSegmentationToSurfaceFilter.h.
◆ m_InterpolationX
|
protected |
Definition at line 158 of file mitkManualSegmentationToSurfaceFilter.h.
◆ m_InterpolationY
|
protected |
Definition at line 159 of file mitkManualSegmentationToSurfaceFilter.h.
◆ m_InterpolationZ
|
protected |
Definition at line 160 of file mitkManualSegmentationToSurfaceFilter.h.
◆ m_MedianFilter3D
|
protected |
Definition at line 152 of file mitkManualSegmentationToSurfaceFilter.h.
◆ m_MedianKernelSizeX
|
protected |
Definition at line 153 of file mitkManualSegmentationToSurfaceFilter.h.
◆ m_MedianKernelSizeY
|
protected |
Definition at line 153 of file mitkManualSegmentationToSurfaceFilter.h.
◆ m_MedianKernelSizeZ
|
protected |
Definition at line 153 of file mitkManualSegmentationToSurfaceFilter.h.
◆ m_UseGaussianImageSmooth
|
protected |
Definition at line 154 of file mitkManualSegmentationToSurfaceFilter.h.
The documentation for this class was generated from the following file:
