mitkMaskAndCutRoiImageFilter.h

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/*============================================================================
 
The Medical Imaging Interaction Toolkit (MITK)
 
Copyright (c) German Cancer Research Center (DKFZ)
All rights reserved.
 
Use of this source code is governed by a 3-clause BSD license that can be
found in the LICENSE file.
 
============================================================================*/
#ifndef mitkMaskAndCutRoiImageFilter_h
#define mitkMaskAndCutRoiImageFilter_h
 
#include <MitkAlgorithmsExtExports.h>
#include <mitkImageToImageFilter.h>
 
#include <itkRegionOfInterestImageFilter.h>
#include <mitkAutoCropImageFilter.h>
#include <mitkBoundingObject.h>
#include <mitkDataNode.h>
#include <mitkMaskImageFilter.h>
 
namespace mitk
{
  class MITKALGORITHMSEXT_EXPORT MaskAndCutRoiImageFilter : public ImageToImageFilter
  {
    typedef itk::Image<short, 3> ItkImageType;
    typedef itk::Image<unsigned char, 3> ItkMaskType;
    typedef itk::ImageRegion<3> RegionType;
    typedef itk::RegionOfInterestImageFilter<ItkImageType, ItkImageType> ROIFilterType;
 
  public:
    mitkClassMacro(MaskAndCutRoiImageFilter, ImageToImageFilter);
    itkFactorylessNewMacro(Self);
    itkCloneMacro(Self);
 
    void SetRegionOfInterest(mitk::BaseData *roi);
 
    mitk::Image::Pointer GetOutput();
 
  protected:
    MaskAndCutRoiImageFilter();
    ~MaskAndCutRoiImageFilter() override;
 
    void GenerateData() override;
 
    ROIFilterType::Pointer m_RoiFilter;
    mitk::AutoCropImageFilter::Pointer m_CropFilter;
    mitk::MaskImageFilter::Pointer m_MaskFilter;
 
    // needed for temporary fix
    mitk::Image::Pointer m_outputImage;
 
  }; // class
 
} // namespace
 
#endif