mitkMRNormLinearStatisticBasedFilter.h

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/*============================================================================
 
The Medical Imaging Interaction Toolkit (MITK)
 
Copyright (c) German Cancer Research Center (DKFZ)
All rights reserved.
 
Use of this source code is governed by a 3-clause BSD license that can be
found in the LICENSE file.
 
============================================================================*/
 
#ifndef mitkMRNormLinearStatisticBasedFilter_h
#define mitkMRNormLinearStatisticBasedFilter_h
 
#include "mitkCommon.h"
#include "MitkCLMRUtilitiesExports.h"
#include "mitkImageToImageFilter.h"
#include "mitkImageTimeSelector.h"
 
#include "itkImage.h"
 
namespace mitk {
  //##Documentation
  //## @brief
  //## @ingroup Process
  class MITKCLMRUTILITIES_EXPORT MRNormLinearStatisticBasedFilter : public ImageToImageFilter
  {
  public:
    mitkClassMacro(MRNormLinearStatisticBasedFilter, ImageToImageFilter);
 
    itkFactorylessNewMacro(Self);
    itkCloneMacro(Self);
 
    void SetMask( const mitk::Image* mask );
 
    const mitk::Image* GetMask() const;
 
    enum NormalizationBase
    {
      MEAN,
      MODE,
      MEDIAN
    };
 
    itkGetConstMacro(CenterMode, NormalizationBase);
    itkSetMacro(CenterMode, NormalizationBase);
 
    itkGetConstMacro(IgnoreOutlier, bool);
    itkSetMacro(IgnoreOutlier, bool);
 
    itkGetConstMacro(TargetValue, double);
    itkSetMacro(TargetValue, double);
 
    itkGetConstMacro(TargetWidth, double);
    itkSetMacro(TargetWidth, double);
 
  protected:
    MRNormLinearStatisticBasedFilter();
 
    ~MRNormLinearStatisticBasedFilter() override;
 
    void GenerateInputRequestedRegion() override;
 
    void GenerateOutputInformation() override;
 
    void GenerateData() override;
 
    template < typename TPixel, unsigned int VImageDimension >
    void InternalComputeMask(itk::Image<TPixel, VImageDimension>* itkImage);
 
    NormalizationBase m_CenterMode;
    bool m_IgnoreOutlier;
  private:
    double m_TargetValue;
    double m_TargetWidth;
 
  };
} // namespace mitk
 
#endif