#include <mitkSurfaceInterpolationController.h>

Inheritance diagram for mitk::SurfaceInterpolationController:

Collaboration diagram for mitk::SurfaceInterpolationController:

Classes
struct	ContourPositionInformation

Public Types
typedef std::vector< ContourPositionInformation >	ContourPositionInformationList

typedef std::vector< ContourPositionInformationList >	ContourPositionInformationVec2D

typedef std::map< mitk::Image *, ContourPositionInformationVec2D >	ContourListMap

Public Member Functions
	mitkClassMacroItkParent (SurfaceInterpolationController, itk::Object)

Pointer	Clone () const

virtual double	GetDistanceImageSpacing ()

void	SetCurrentTimeStep (unsigned int ts)

unsigned int	GetCurrentTimeStep ()

void	AddNewContour (Surface::Pointer newContour)
	Adds a new extracted contour to the list. More...

bool	RemoveContour (ContourPositionInformation contourInfo)
	Removes the contour for a given plane for the current selected segmenation. More...

void	AddNewContours (std::vector< Surface::Pointer > newContours)
	Adds new extracted contours to the list. If one or more contours at a given position already exist they will be updated respectively. More...

const mitk::Surface *	GetContour (ContourPositionInformation contourInfo)
	Returns the contour for a given plane for the current selected segmenation. More...

unsigned int	GetNumberOfContours ()
	Returns the number of available contours for the current selected segmentation. More...

void	Interpolate ()

mitk::Surface::Pointer	GetInterpolationResult ()

void	SetMinSpacing (double minSpacing)

void	SetMaxSpacing (double maxSpacing)

void	SetDistanceImageVolume (unsigned int distImageVolume)

mitk::Image::Pointer	GetCurrentSegmentation ()
	Get the current selected segmentation for which the interpolation is performed. More...

Surface *	GetContoursAsSurface ()

void	SetDataStorage (DataStorage::Pointer ds)

void	SetCurrentSegmentationInterpolationList (mitk::Image::Pointer segmentation)

void	SetCurrentInterpolationSession (mitk::Image::Pointer currentSegmentationImage)

void	RemoveSegmentationFromContourList (mitk::Image *segmentation)

void	RemoveInterpolationSession (mitk::Image::Pointer segmentationImage)
	Remove interpolation session. More...

bool	ReplaceInterpolationSession (mitk::Image::Pointer oldSession, mitk::Image::Pointer newSession)

void	RemoveAllInterpolationSessions ()
	Removes all sessions. More...

void	ReinitializeInterpolation (mitk::Surface::Pointer contours)
	Reinitializes the interpolation using the provided contour data. More...

mitk::Image *	GetImage ()

double	EstimatePortionOfNeededMemory ()

unsigned int	GetNumberOfInterpolationSessions ()

Static Public Member Functions
static Pointer	New ()

static SurfaceInterpolationController *	GetInstance ()

Protected Member Functions
	SurfaceInterpolationController ()

	~SurfaceInterpolationController () override

template<typename TPixel , unsigned int VImageDimension>
void	GetImageBase (itk::Image< TPixel, VImageDimension > *input, itk::ImageBase< 3 >::Pointer &result)

Detailed Description

Definition at line 48 of file mitkSurfaceInterpolationController.h.

Member Typedef Documentation

◆ ContourListMap

typedef std::map<mitk::Image *, ContourPositionInformationVec2D> mitk::SurfaceInterpolationController::ContourListMap

Definition at line 66 of file mitkSurfaceInterpolationController.h.

◆ ContourPositionInformationList

typedef std::vector<ContourPositionInformation> mitk::SurfaceInterpolationController::ContourPositionInformationList

Definition at line 63 of file mitkSurfaceInterpolationController.h.

◆ ContourPositionInformationVec2D

typedef std::vector<ContourPositionInformationList> mitk::SurfaceInterpolationController::ContourPositionInformationVec2D

Definition at line 64 of file mitkSurfaceInterpolationController.h.

Constructor & Destructor Documentation

◆ SurfaceInterpolationController()

mitk::SurfaceInterpolationController::SurfaceInterpolationController ( )

protected

Definition at line 76 of file mitkSurfaceInterpolationController.cpp.

References mitk::Surface::New(), mitk::ComputeContourSetNormalsFilter::New(), mitk::ReduceContourSetFilter::New(), and mitk::CreateDistanceImageFromSurfaceFilter::New().

◆ ~SurfaceInterpolationController()

mitk::SurfaceInterpolationController::~SurfaceInterpolationController ( )

overrideprotected

Definition at line 102 of file mitkSurfaceInterpolationController.cpp.

Member Function Documentation

◆ AddNewContour()

void mitk::SurfaceInterpolationController::AddNewContour ( Surface::Pointer newContour )

Adds a new extracted contour to the list.

Parameters

newContour the contour to be added. If a contour at that position already exists the related contour will be updated

Definition at line 124 of file mitkSurfaceInterpolationController.cpp.

References CreateContourPositionInformation().

Referenced by mitk::SegTool2D::UpdateSurfaceInterpolation().

◆ AddNewContours()

void mitk::SurfaceInterpolationController::AddNewContours ( std::vector< Surface::Pointer > newContours )

Adds new extracted contours to the list. If one or more contours at a given position already exist they will be updated respectively.

Parameters

newContours the list of the contours

Definition at line 135 of file mitkSurfaceInterpolationController.cpp.

References mitk::SurfaceInterpolationController::ContourPositionInformation::contour, ContoursCoplanar(), CreateContourPositionInformation(), mitk::BaseData::GetTimeSteps(), mitk::Surface::GetVtkPolyData(), MITK_ERROR, and RemoveContour().

Referenced by ReinitializeInterpolation(), and mitk::SegTool2D::WriteBackSegmentationResult().

◆ Clone()

Pointer mitk::SurfaceInterpolationController::Clone ( ) const

◆ EstimatePortionOfNeededMemory()

double mitk::SurfaceInterpolationController::EstimatePortionOfNeededMemory ( )

Estimates the memory which is needed to build up the equationsystem for the interpolation.

Returns: The percentage of the real memory which will be used by the interpolation

Definition at line 372 of file mitkSurfaceInterpolationController.cpp.

References mitk::MemoryUtilities::GetTotalSizeOfPhysicalRam().

◆ GetContour()

const mitk::Surface * mitk::SurfaceInterpolationController::GetContour ( ContourPositionInformation contourInfo )

Returns the contour for a given plane for the current selected segmenation.

Parameters

ontourInfo the contour which should be returned

Returns: the contour as an mitk::Surface. If no contour is available at the give position nullptr is returned

Definition at line 223 of file mitkSurfaceInterpolationController.cpp.

References mitk::SurfaceInterpolationController::ContourPositionInformation::contour, ContoursCoplanar(), and mitk::BaseData::GetTimeSteps().

◆ GetContoursAsSurface()

mitk::Surface * mitk::SurfaceInterpolationController::GetContoursAsSurface ( )

Definition at line 336 of file mitkSurfaceInterpolationController.cpp.

◆ GetCurrentSegmentation()

mitk::Image::Pointer mitk::SurfaceInterpolationController::GetCurrentSegmentation ( )

Get the current selected segmentation for which the interpolation is performed.

Returns: the current segmentation image

Definition at line 362 of file mitkSurfaceInterpolationController.cpp.

◆ GetCurrentTimeStep()

unsigned int mitk::SurfaceInterpolationController::GetCurrentTimeStep ( )

inline

Definition at line 83 of file mitkSurfaceInterpolationController.h.

References DEPRECATED, and m_DataStorage.

◆ GetDistanceImageSpacing()

virtual double mitk::SurfaceInterpolationController::GetDistanceImageSpacing ( )

virtual

Referenced by QmitkSlicesInterpolator::OnAccept3DInterpolationClicked().

◆ GetImage()

mitk::Image * mitk::SurfaceInterpolationController::GetImage ( void )

Definition at line 367 of file mitkSurfaceInterpolationController.cpp.

◆ GetImageBase()

template<typename TPixel , unsigned int VImageDimension>

void mitk::SurfaceInterpolationController::GetImageBase	(	itk::Image< TPixel, VImageDimension > *	input,
		itk::ImageBase< 3 >::Pointer &	result
	)

protected

Definition at line 387 of file mitkSurfaceInterpolationController.cpp.

Referenced by ReinitializeInterpolation().

◆ GetInstance()

mitk::SurfaceInterpolationController * mitk::SurfaceInterpolationController::GetInstance ( )

static

Definition at line 113 of file mitkSurfaceInterpolationController.cpp.

References New().

Referenced by QmitkSlicesInterpolator::OnAccept3DInterpolationClicked(), QmitkSlicesInterpolator::OnReinit3DInterpolation(), mitk::SegTool2D::UpdateSurfaceInterpolation(), and mitk::SegTool2D::WriteBackSegmentationResult().

◆ GetInterpolationResult()

mitk::Surface::Pointer mitk::SurfaceInterpolationController::GetInterpolationResult ( )

Definition at line 331 of file mitkSurfaceInterpolationController.cpp.

◆ GetNumberOfContours()

unsigned int mitk::SurfaceInterpolationController::GetNumberOfContours ( )

Returns the number of available contours for the current selected segmentation.

Returns: the number of contours

Definition at line 246 of file mitkSurfaceInterpolationController.cpp.

References mitk::BaseData::GetTimeSteps().

◆ GetNumberOfInterpolationSessions()

unsigned int mitk::SurfaceInterpolationController::GetNumberOfInterpolationSessions ( )

Definition at line 381 of file mitkSurfaceInterpolationController.cpp.

◆ Interpolate()

void mitk::SurfaceInterpolationController::Interpolate ( )

Interpolates the 3D surface from the given extracted contours

Definition at line 262 of file mitkSurfaceInterpolationController.cpp.

References mitk::ProgressBar::AddStepsToDo(), mitk::ProgressBar::GetInstance(), mitk::ImageTimeSelector::New(), mitk::Surface::New(), mitk::ImageToSurfaceFilter::New(), and mitk::ProgressBar::Progress().

◆ mitkClassMacroItkParent()

mitk::SurfaceInterpolationController::mitkClassMacroItkParent	(	SurfaceInterpolationController	,
		itk::Object
	)

◆ New()

static Pointer mitk::SurfaceInterpolationController::New ( )

static

Referenced by GetInstance().

◆ ReinitializeInterpolation()

void mitk::SurfaceInterpolationController::ReinitializeInterpolation ( mitk::Surface::Pointer contours )

Reinitializes the interpolation using the provided contour data.

Parameters

contours a mitk::Surface which contains the contours as polys in the vtkPolyData

Definition at line 514 of file mitkSurfaceInterpolationController.cpp.

References AccessFixedDimensionByItk_1, AddNewContours(), mitk::SurfaceInterpolationController::ContourPositionInformation::contourNormal, mitk::SurfaceInterpolationController::ContourPositionInformation::contourPoint, ContoursCoplanar(), GetImageBase(), mitk::BaseData::GetTimeSteps(), k(), mitk::ImageTimeSelector::New(), mitk::Surface::New(), and ReinitializeInterpolation().

Referenced by QmitkSlicesInterpolator::OnReinit3DInterpolation(), ReinitializeInterpolation(), RemoveContour(), and SetCurrentInterpolationSession().

◆ RemoveAllInterpolationSessions()

void mitk::SurfaceInterpolationController::RemoveAllInterpolationSessions ( )

Removes all sessions.

Definition at line 498 of file mitkSurfaceInterpolationController.cpp.

References image.

◆ RemoveContour()

bool mitk::SurfaceInterpolationController::RemoveContour ( ContourPositionInformation contourInfo )

Removes the contour for a given plane for the current selected segmenation.

Parameters

contourInfo the contour which should be removed

Returns: true if a contour was found and removed, false if no contour was found

Definition at line 195 of file mitkSurfaceInterpolationController.cpp.

References ContoursCoplanar(), mitk::BaseData::GetTimeSteps(), and ReinitializeInterpolation().

Referenced by AddNewContours(), and mitk::SegTool2D::UpdateSurfaceInterpolation().

◆ RemoveInterpolationSession()

void mitk::SurfaceInterpolationController::RemoveInterpolationSession ( mitk::Image::Pointer segmentationImage )

Remove interpolation session.

Parameters

segmentationImage the session to be removed

Definition at line 478 of file mitkSurfaceInterpolationController.cpp.

Referenced by RemoveSegmentationFromContourList(), and ReplaceInterpolationSession().

◆ RemoveSegmentationFromContourList()

void mitk::SurfaceInterpolationController::RemoveSegmentationFromContourList ( mitk::Image * segmentation )

Removes the segmentation and all its contours from the list

Parameters

segmentation The segmentation to be removed

Deprecated:: (as of 2014_03)

Definition at line 473 of file mitkSurfaceInterpolationController.cpp.

References RemoveInterpolationSession().

◆ ReplaceInterpolationSession()

bool mitk::SurfaceInterpolationController::ReplaceInterpolationSession	(	mitk::Image::Pointer	oldSession,
		mitk::Image::Pointer	newSession
	)

Replaces the current interpolation session with a new one. All contours form the old session will be applied to the new session. This only works if the two images have the geometry

Parameters

oldSession	the session which should be replaced
newSession	the new session which replaces the old one

Returns: true it the the replacement was successful, false if not (e.g. the image's geometry differs)

Definition at line 432 of file mitkSurfaceInterpolationController.cpp.

References mitk::eps, mitk::Equal(), mitk::ImageTimeSelector::New(), and RemoveInterpolationSession().

◆ SetCurrentInterpolationSession()

void mitk::SurfaceInterpolationController::SetCurrentInterpolationSession ( mitk::Image::Pointer currentSegmentationImage )

Sets the current list of contourpoints which is used for the surface interpolation

Parameters

segmentation The current selected segmentation

Definition at line 398 of file mitkSurfaceInterpolationController.cpp.

References ReinitializeInterpolation().

Referenced by SetCurrentSegmentationInterpolationList().

◆ SetCurrentSegmentationInterpolationList()

void mitk::SurfaceInterpolationController::SetCurrentSegmentationInterpolationList ( mitk::Image::Pointer segmentation )

Sets the current list of contourpoints which is used for the surface interpolation

Parameters

segmentation The current selected segmentation

Deprecated:: (as of 2014_03)

Definition at line 393 of file mitkSurfaceInterpolationController.cpp.

References SetCurrentInterpolationSession().

◆ SetCurrentTimeStep()

void mitk::SurfaceInterpolationController::SetCurrentTimeStep ( unsigned int ts )

inline

Definition at line 70 of file mitkSurfaceInterpolationController.h.

◆ SetDataStorage()

void mitk::SurfaceInterpolationController::SetDataStorage ( DataStorage::Pointer ds )

Definition at line 341 of file mitkSurfaceInterpolationController.cpp.

◆ SetDistanceImageVolume()

void mitk::SurfaceInterpolationController::SetDistanceImageVolume ( unsigned int distImageVolume )

Sets the volume i.e. the number of pixels that the distance image should have By evaluation we found out that 50.000 pixel delivers a good result

Definition at line 357 of file mitkSurfaceInterpolationController.cpp.

◆ SetMaxSpacing()

void mitk::SurfaceInterpolationController::SetMaxSpacing ( double maxSpacing )

Sets the minimum spacing of the current selected segmentation This is needed since the contour points we reduced before they are used to interpolate the surface

Definition at line 351 of file mitkSurfaceInterpolationController.cpp.

◆ SetMinSpacing()

void mitk::SurfaceInterpolationController::SetMinSpacing ( double minSpacing )

Sets the minimum spacing of the current selected segmentation This is needed since the contour points we reduced before they are used to interpolate the surface

Definition at line 346 of file mitkSurfaceInterpolationController.cpp.

The documentation for this class was generated from the following files:

Classes

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Detailed Description

Member Typedef Documentation

◆ ContourListMap

◆ ContourPositionInformationList

◆ ContourPositionInformationVec2D

Constructor & Destructor Documentation

◆ SurfaceInterpolationController()

◆ ~SurfaceInterpolationController()

Member Function Documentation

◆ AddNewContour()

◆ AddNewContours()

◆ Clone()

◆ EstimatePortionOfNeededMemory()

◆ GetContour()

◆ GetContoursAsSurface()

◆ GetCurrentSegmentation()

◆ GetCurrentTimeStep()

◆ GetDistanceImageSpacing()

◆ GetImage()

◆ GetImageBase()

◆ GetInstance()

◆ GetInterpolationResult()

◆ GetNumberOfContours()

◆ GetNumberOfInterpolationSessions()

◆ Interpolate()

◆ mitkClassMacroItkParent()

◆ New()

◆ ReinitializeInterpolation()

◆ RemoveAllInterpolationSessions()

◆ RemoveContour()

◆ RemoveInterpolationSession()

◆ RemoveSegmentationFromContourList()

◆ ReplaceInterpolationSession()

◆ SetCurrentInterpolationSession()

◆ SetCurrentSegmentationInterpolationList()

◆ SetCurrentTimeStep()

◆ SetDataStorage()

◆ SetDistanceImageVolume()

◆ SetMaxSpacing()

◆ SetMinSpacing()