Medical Imaging Interaction Toolkit  2016.11.0
Medical Imaging Interaction Toolkit
itkTractsToFiberEndingsImageFilter.h
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1 /*===================================================================
2 
3 The Medical Imaging Interaction Toolkit (MITK)
4 
5 Copyright (c) German Cancer Research Center,
6 Division of Medical and Biological Informatics.
7 All rights reserved.
8 
9 This software is distributed WITHOUT ANY WARRANTY; without
10 even the implied warranty of MERCHANTABILITY or FITNESS FOR
11 A PARTICULAR PURPOSE.
12 
13 See LICENSE.txt or http://www.mitk.org for details.
14 
15 ===================================================================*/
16 #ifndef __itkTractsToFiberEndingsImageFilter_h__
17 #define __itkTractsToFiberEndingsImageFilter_h__
18 
19 #include <itkImageSource.h>
20 #include <itkImage.h>
21 #include <itkVectorContainer.h>
22 #include <itkRGBAPixel.h>
23 #include <mitkFiberBundle.h>
24 
25 namespace itk{
26 
30 template< class OutputImageType >
31 class TractsToFiberEndingsImageFilter : public ImageSource< OutputImageType >
32 {
33 
34 public:
36  typedef ProcessObject Superclass;
39 
41 
42  itkFactorylessNewMacro(Self)
43  itkCloneMacro(Self)
44  itkTypeMacro( TractsToFiberEndingsImageFilter, ImageSource )
45 
47  itkSetMacro( UpsamplingFactor, float)
48  itkGetMacro( UpsamplingFactor, float)
49 
51  itkSetMacro( InvertImage, bool)
52  itkGetMacro( InvertImage, bool)
53 
54  itkSetMacro( FiberBundle, mitk::FiberBundle::Pointer)
55  itkSetMacro( InputImage, typename OutputImageType::Pointer)
56 
58  itkSetMacro( UseImageGeometry, bool)
59  itkGetMacro( UseImageGeometry, bool)
60 
61  itkSetMacro( BinaryOutput, bool)
62 
63  void GenerateData();
64 
65 protected:
66 
67  itk::Point<float, 3> GetItkPoint(double point[3]);
68 
69  TractsToFiberEndingsImageFilter();
70  virtual ~TractsToFiberEndingsImageFilter();
71 
72  mitk::FiberBundle::Pointer m_FiberBundle;
77  typename OutputImageType::Pointer m_InputImage;
78 };
79 
80 }
81 
82 #ifndef ITK_MANUAL_INSTANTIATION
84 #endif
85 
86 #endif // __itkTractsToFiberEndingsImageFilter_h__
float m_UpsamplingFactor
use higher resolution for ouput image
bool m_UseImageGeometry
output image is given other geometry than fiberbundle (input image geometry)
DataCollection - Class to facilitate loading/accessing structured data.
Generates image where the pixel values are set according to the number of fibers ending in the voxel...
unsigned short PixelType
itk::Point< float, 3 > GetItkPoint(double point[3])
mitk::FiberBundle::Pointer m_FiberBundle
input fiber bundle