#include <mitkLabelSetImageToSurfaceFilter.h>

Inheritance diagram for mitk::LabelSetImageToSurfaceFilter:

Collaboration diagram for mitk::LabelSetImageToSurfaceFilter:

Public Types
typedef LabelSetImage::PixelType	LabelType

typedef std::map< LabelType, unsigned long >	LabelMapType

typedef std::map< unsigned int, LabelType >	IndexToLabelMapType

Public Types inherited from mitk::SurfaceSource
typedef SurfaceSource	Self

typedef BaseDataSource	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef Surface	OutputType

Public Types inherited from mitk::BaseDataSource
typedef BaseDataSource	Self

typedef itk::ProcessObject	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef BaseData	OutputType

typedef itk::DataObject::DataObjectIdentifierType	DataObjectIdentifierType

Public Member Functions
	mitkClassMacro (LabelSetImageToSurfaceFilter, SurfaceSource)

const mitk::Image *	GetInput (void)

virtual void	SetInput (const mitk::Image *image)

virtual void	SetGenerateAllLabels (bool _arg)

virtual bool	GetGenerateAllLabels ()

virtual void	GenerateAllLabelsOn ()

virtual void	GenerateAllLabelsOff ()

virtual void	SetRequestedLabel (int _arg)

virtual int	GetRequestedLabel ()

virtual void	SetBackgroundLabel (int _arg)

virtual int	GetBackgroundLabel ()

virtual void	SetUseSmoothing (int _arg)

virtual void	SetSigma (float _arg)

Public Member Functions inherited from mitk::SurfaceSource
virtual std::vector< std::string >	GetClassHierarchy () const override

virtual const char *	GetClassName () const

Pointer	Clone () const

OutputType *	GetOutput ()

const OutputType *	GetOutput () const

OutputType *	GetOutput (DataObjectPointerArraySizeType idx)

const OutputType *	GetOutput (DataObjectPointerArraySizeType idx) const

virtual itk::DataObject::Pointer	MakeOutput (DataObjectPointerArraySizeType idx) override

virtual itk::DataObject::Pointer	MakeOutput (const DataObjectIdentifierType &name) override

Public Member Functions inherited from mitk::BaseDataSource
OutputType *	GetOutput ()

const OutputType *	GetOutput () const

OutputType *	GetOutput (DataObjectPointerArraySizeType idx)

const OutputType *	GetOutput (DataObjectPointerArraySizeType idx) const

virtual void	GraftOutput (OutputType *output)
	Graft the specified BaseData onto this BaseDataSource's output. More...

virtual void	GraftOutput (const DataObjectIdentifierType &key, OutputType *output)

virtual void	GraftNthOutput (unsigned int idx, OutputType *output)
	Graft the specified base data object onto this BaseDataSource's idx'th output. More...

bool	Updating () const
	Access itk::ProcessObject::m_Updating. More...

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from mitk::SurfaceSource
static const char *	GetStaticNameOfClass ()

static Pointer	New ()

Static Public Member Functions inherited from mitk::BaseDataSource
static const char *	GetStaticNameOfClass ()

Protected Member Functions
	LabelSetImageToSurfaceFilter ()

virtual	~LabelSetImageToSurfaceFilter ()

template<class T1 , class T2 , class T3 >
void	mitkVtkLinearTransformPoint (T1 matrix[4][4], T2 in[3], T3 out[3])

template<typename TPixel , unsigned int VImageDimension>
void	InternalProcessing (const itk::Image< TPixel, VImageDimension > input, mitk::Surface surface)

virtual void	GenerateData () override

virtual void	GenerateOutputInformation () override

Protected Member Functions inherited from mitk::SurfaceSource
	SurfaceSource ()

virtual	~SurfaceSource ()

Protected Member Functions inherited from mitk::BaseDataSource
	BaseDataSource ()

virtual	~BaseDataSource ()

Protected Attributes
mitk::Image::Pointer	m_ResultImage

bool	m_GenerateAllLabels

int	m_RequestedLabel

int	m_BackgroundLabel

int	m_UseSmoothing

float	m_Sigma

LabelMapType	m_AvailableLabels

IndexToLabelMapType	m_IndexToLabels

mitk::Vector3D	m_InputImageSpacing

Additional Inherited Members
Static Protected Member Functions inherited from mitk::BaseDataSource
static Pointer	New ()

Detailed Description

Generates surface meshes from a labelset image. If you want to calculate a surface representation for all available labels, you may call GenerateAllLabelsOn().

Definition at line 38 of file mitkLabelSetImageToSurfaceFilter.h.

Member Typedef Documentation

typedef std::map<unsigned int, LabelType> mitk::LabelSetImageToSurfaceFilter::IndexToLabelMapType

Definition at line 49 of file mitkLabelSetImageToSurfaceFilter.h.

typedef std::map<LabelType, unsigned long> mitk::LabelSetImageToSurfaceFilter::LabelMapType

Definition at line 47 of file mitkLabelSetImageToSurfaceFilter.h.

typedef LabelSetImage::PixelType mitk::LabelSetImageToSurfaceFilter::LabelType

Definition at line 43 of file mitkLabelSetImageToSurfaceFilter.h.

Constructor & Destructor Documentation

mitk::LabelSetImageToSurfaceFilter::LabelSetImageToSurfaceFilter ( )

protected

Definition at line 41 of file mitkLabelSetImageToSurfaceFilter.cpp.

mitk::LabelSetImageToSurfaceFilter::~LabelSetImageToSurfaceFilter ( )

protectedvirtual

Definition at line 46 of file mitkLabelSetImageToSurfaceFilter.cpp.

Member Function Documentation

virtual void mitk::LabelSetImageToSurfaceFilter::GenerateAllLabelsOff ( )

virtual

virtual void mitk::LabelSetImageToSurfaceFilter::GenerateAllLabelsOn ( )

virtual

void mitk::LabelSetImageToSurfaceFilter::GenerateData ( )

overrideprotectedvirtual

Definition at line 76 of file mitkLabelSetImageToSurfaceFilter.cpp.

References AccessFixedDimensionByItk_1.

void mitk::LabelSetImageToSurfaceFilter::GenerateOutputInformation ( void )

overrideprotectedvirtual

Definition at line 71 of file mitkLabelSetImageToSurfaceFilter.cpp.

virtual int mitk::LabelSetImageToSurfaceFilter::GetBackgroundLabel ( )

virtual

Gets the label value of the background. No surface will be generated for this label.

Parameters

_arg	the label of the background, by default 0

virtual bool mitk::LabelSetImageToSurfaceFilter::GetGenerateAllLabels ( )

virtual

Returns: if all labels or only a specific label should be extracted.

const mitk::Image * mitk::LabelSetImageToSurfaceFilter::GetInput ( void )

Returns a const pointer to the labelset image set as input

Definition at line 61 of file mitkLabelSetImageToSurfaceFilter.cpp.

virtual int mitk::LabelSetImageToSurfaceFilter::GetRequestedLabel ( )

virtual

Returns the label you want to extract. This method only has an effect, if GenerateAllLabels() is set to false

Returns: _arg the label to extract, by default 1

template<typename TPixel , unsigned int VDimension>

void mitk::LabelSetImageToSurfaceFilter::InternalProcessing	(	const itk::Image< TPixel, VDimension > *	input,
		mitk::Surface *	surface
	)

protected

Definition at line 90 of file mitkLabelSetImageToSurfaceFilter.cpp.

References mitk::CastToMitkImage(), mitk::BaseGeometry::GetSpacing(), mitk::BaseGeometry::GetVtkTransform(), mitk::New(), mitk::Image::New(), mitk::BaseGeometry::SetOrigin(), and mitk::vtk2itk().

mitk::LabelSetImageToSurfaceFilter::mitkClassMacro	(	LabelSetImageToSurfaceFilter	,
		SurfaceSource
	)

template<class T1 , class T2 , class T3 >

void mitk::LabelSetImageToSurfaceFilter::mitkVtkLinearTransformPoint	(	T1	matrix[4][4],
		T2	in[3],
		T3	out[3]
	)

inlineprotected

Transforms a point by a 4x4 matrix

Definition at line 121 of file mitkLabelSetImageToSurfaceFilter.h.

static Pointer mitk::LabelSetImageToSurfaceFilter::New ( )

static

Referenced by mitk::LabelSetImageToSurfaceThreadedFilter::ThreadedUpdateFunction().

virtual void mitk::LabelSetImageToSurfaceFilter::SetBackgroundLabel ( int _arg )

virtual

Sets the label value of the background. No surface will be generated for this label.

Parameters

_arg	the label of the background, by default 0

virtual void mitk::LabelSetImageToSurfaceFilter::SetGenerateAllLabels ( bool _arg )

virtual

Set whether you want to extract all labesl (true) or a single one.

void mitk::LabelSetImageToSurfaceFilter::SetInput ( const mitk::Image * image )

virtual

Definition at line 50 of file mitkLabelSetImageToSurfaceFilter.cpp.

virtual void mitk::LabelSetImageToSurfaceFilter::SetRequestedLabel ( int _arg )

virtual

Set the label you want to extract. This method only has an effect, if GenerateAllLabels() is set to false

Parameters

_arg	the label to extract, by default 1

virtual void mitk::LabelSetImageToSurfaceFilter::SetSigma ( float _arg )

virtual

Sets the Sigma used in the gaussian smoothing

virtual void mitk::LabelSetImageToSurfaceFilter::SetUseSmoothing ( int _arg )

virtual

Sets whether to provide a smoothed surface

Member Data Documentation

LabelMapType mitk::LabelSetImageToSurfaceFilter::m_AvailableLabels

protected

Definition at line 146 of file mitkLabelSetImageToSurfaceFilter.h.

int mitk::LabelSetImageToSurfaceFilter::m_BackgroundLabel

protected

Definition at line 140 of file mitkLabelSetImageToSurfaceFilter.h.

bool mitk::LabelSetImageToSurfaceFilter::m_GenerateAllLabels

protected

Definition at line 136 of file mitkLabelSetImageToSurfaceFilter.h.

IndexToLabelMapType mitk::LabelSetImageToSurfaceFilter::m_IndexToLabels

protected

Definition at line 148 of file mitkLabelSetImageToSurfaceFilter.h.

mitk::Vector3D mitk::LabelSetImageToSurfaceFilter::m_InputImageSpacing

protected

Definition at line 150 of file mitkLabelSetImageToSurfaceFilter.h.

int mitk::LabelSetImageToSurfaceFilter::m_RequestedLabel

protected

Definition at line 138 of file mitkLabelSetImageToSurfaceFilter.h.

mitk::Image::Pointer mitk::LabelSetImageToSurfaceFilter::m_ResultImage

protected

Definition at line 131 of file mitkLabelSetImageToSurfaceFilter.h.

float mitk::LabelSetImageToSurfaceFilter::m_Sigma

protected

Definition at line 144 of file mitkLabelSetImageToSurfaceFilter.h.

int mitk::LabelSetImageToSurfaceFilter::m_UseSmoothing

protected

Definition at line 142 of file mitkLabelSetImageToSurfaceFilter.h.

The documentation for this class was generated from the following files:

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation