Corrector tool for 2D binary segmentations. More...

#include <mitkCorrectorTool2D.h>

Inheritance diagram for mitk::CorrectorTool2D:

Collaboration diagram for mitk::CorrectorTool2D:

Public Member Functions
	mitkClassMacro (CorrectorTool2D, FeedbackContourTool)

Pointer	Clone () const

virtual const char **	GetXPM () const override
	Returns an icon in the XPM format. More...

virtual us::ModuleResource	GetCursorIconResource () const override
	Returns the path of a cursor icon. More...

us::ModuleResource	GetIconResource () const override
	Returns the tool button icon of the tool wrapped by a usModuleResource. More...

virtual const char *	GetName () const override
	Returns the name of this tool. Make it short! More...

Public Member Functions inherited from mitk::FeedbackContourTool
	mitkClassMacro (FeedbackContourTool, SegTool2D)

Public Member Functions inherited from mitk::SegTool2D
	mitkClassMacro (SegTool2D, Tool)

void	SetShowMarkerNodes (bool)

void	SetEnable3DInterpolation (bool)
	Enables or disables the 3D interpolation after writing back the 2D segmentation result, and defaults to true. More...

Public Member Functions inherited from mitk::Tool
	mitkClassMacro (Tool, EventStateMachine)

virtual std::string	GetIconPath () const
	Returns the path of an icon. More...

virtual const char *	GetGroup () const
	Name of a group. More...

virtual void	InitializeStateMachine ()

virtual itk::Object::Pointer	GetGUI (const std::string &toolkitPrefix, const std::string &toolkitPostfix)
	Interface for GUI creation. More...

virtual NodePredicateBase::ConstPointer	GetReferenceDataPreference () const

virtual NodePredicateBase::ConstPointer	GetWorkingDataPreference () const

DataNode::Pointer	CreateEmptySegmentationNode (Image *original, const std::string &organName, const mitk::Color &color)

DataNode::Pointer	CreateSegmentationNode (Image *image, const std::string &organName, const mitk::Color &color)

virtual bool	CanHandle (BaseData *referenceData) const

Public Member Functions inherited from mitk::EventStateMachine
virtual std::vector< std::string >	GetClassHierarchy () const override

virtual const char *	GetClassName () const

bool	LoadStateMachine (const std::string &filename, const us::Module *module=nullptr)
	Loads XML resource. More...

bool	HandleEvent (InteractionEvent event, DataNode dataNode)

void	EnableUndo (bool enable)
	Enables or disabled Undo. More...

void	EnableInteraction (bool enable)
	Enables/disables the state machine. In un-enabled state it won't react to any events. More...

Public Member Functions inherited from mitk::InteractionEventHandler
bool	SetEventConfig (const std::string &filename, const us::Module *module=nullptr)
	Loads a configuration from an XML resource. More...

bool	SetEventConfig (const EventConfig &config)
	Loads a configuration from an EventConfig object. More...

EventConfig	GetEventConfig () const
	Returns the current configuration. More...

bool	AddEventConfig (const std::string &filename, const us::Module *module=nullptr)
	This method extends the configuration. More...

bool	AddEventConfig (const EventConfig &config)
	This method extends the configuration. The configuration from the EventConfig object is loaded and only the ones conflicting are replaced by the new one. This way several configurations can be combined. More...

Public Member Functions inherited from mitk::InteractionEventObserver
	InteractionEventObserver ()

virtual	~InteractionEventObserver ()

void	Disable ()

void	Enable ()

bool	IsEnabled () const

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from mitk::SegTool2D
static bool	DetermineAffectedImageSlice (const Image image, const PlaneGeometry plane, int &affectedDimension, int &affectedSlice)
	Calculates for a given Image and PlaneGeometry, which slice of the image (in index corrdinates) is meant by the plane. More...

static void	UpdateSurfaceInterpolation (const Image slice, const Image workingImage, const PlaneGeometry *plane, bool detectIntersection)
	Updates the surface interpolation by extracting the contour form the given slice. More...

Static Public Member Functions inherited from mitk::EventStateMachine
static const char *	GetStaticNameOfClass ()

Static Public Member Functions inherited from mitk::InteractionEventHandler
static const char *	GetStaticNameOfClass ()

Protected Member Functions
	CorrectorTool2D (int paintingPixelValue=1)

virtual	~CorrectorTool2D ()

void	ConnectActionsAndFunctions () override

virtual void	Activated () override
	Called when the tool gets activated. More...

virtual void	Deactivated () override
	Called when the tool gets deactivated. More...

virtual void	OnMousePressed (StateMachineAction , InteractionEvent )

virtual void	OnMouseMoved (StateMachineAction , InteractionEvent )

virtual void	OnMouseReleased (StateMachineAction , InteractionEvent )

Protected Member Functions inherited from mitk::FeedbackContourTool
	FeedbackContourTool ()

	FeedbackContourTool (const char *)

virtual	~FeedbackContourTool ()

ContourModel *	GetFeedbackContour ()

void	SetFeedbackContour (ContourModel::Pointer)

void	SetFeedbackContourVisible (bool)

void	SetFeedbackContourColor (float r, float g, float b)
	Provide values from 0.0 (black) to 1.0 (full color) More...

void	SetFeedbackContourColorDefault ()

void	Deactivated () override
	Called when the tool gets deactivated. More...

void	Activated () override
	Called when the tool gets activated. More...

ContourModel::Pointer	ProjectContourTo2DSlice (Image slice, ContourModel contourIn3D, bool correctionForIpSegmentation=false, bool constrainToInside=true)
	Projects a contour onto an image point by point. Converts from world to index coordinates. More...

ContourModel::Pointer	BackProjectContourFrom2DSlice (const BaseGeometry sliceGeometry, ContourModel contourIn2D, bool correctionForIpSegmentation=false)
	Projects a slice index coordinates of a contour back into world coordinates. More...

void	FillContourInSlice (ContourModel projectedContour, Image sliceImage, int paintingPixelValue=1)
	Fill a contour in a 2D slice with a specified pixel value. More...

void	FillContourInSlice (ContourModel projectedContour, unsigned int timeStep, Image sliceImage, int paintingPixelValue=1)
	Fill a contour in a 2D slice with a specified pixel value at a given time step. More...

Protected Member Functions inherited from mitk::SegTool2D
	SegTool2D ()

	SegTool2D (const char *)

virtual	~SegTool2D ()

virtual bool	FilterEvents (InteractionEvent interactionEvent, DataNode dataNode) override
	Filters events that cannot be handle by 2D segmentation tools. More...

Image::Pointer	GetAffectedImageSliceAs2DImage (const InteractionPositionEvent positionEvent, const Image image, unsigned int component=0)
	Extract the slice of an image that the user just scribbles on. The given component denotes the vector component of a dwi-image. More...

Image::Pointer	GetAffectedImageSliceAs2DImage (const PlaneGeometry planeGeometry, const Image image, unsigned int timeStep, unsigned int component=0)
	Extract the slice of an image cut by given plane. The given component denotes the vector component of a dwi-image. More...

Image::Pointer	GetAffectedWorkingSlice (const InteractionPositionEvent *)
	Extract the slice of the currently selected working image that the user just scribbles on. More...

Image::Pointer	GetAffectedReferenceSlice (const InteractionPositionEvent *)
	Extract the slice of the currently selected reference image that the user just scribbles on. More...

void	WriteBackSegmentationResult (const InteractionPositionEvent , Image )

void	WriteBackSegmentationResult (const PlaneGeometry planeGeometry, Image , unsigned int timeStep)

void	WriteBackSegmentationResult (std::vector< SliceInformation > sliceList, bool writeSliceToVolume=true)

void	WritePreviewOnWorkingImage (Image targetSlice, Image sourceSlice, Image *workingImage, int paintingPixelValue, int timestep)

void	WriteSliceToVolume (SliceInformation sliceInfo)

int	AddContourmarker ()
	Adds a new node called Contourmarker to the datastorage which holds a mitk::PlanarFigure. By selecting this node the slicestack will be reoriented according to the PlanarFigure's Geometry. More...

void	InteractiveSegmentationBugMessage (const std::string &message)

Protected Member Functions inherited from mitk::Tool
virtual void	SetToolManager (ToolManager *)

void	ConnectActionsAndFunctions () override

	Tool ()

	Tool (const char *)

virtual	~Tool ()

virtual void	Notify (InteractionEvent *interactionEvent, bool isHandled) override

bool	FilterEvents (InteractionEvent , DataNode ) override

Protected Member Functions inherited from mitk::EventStateMachine
	EventStateMachine ()

virtual	~EventStateMachine ()

void	AddActionFunction (const std::string &action, TActionFunctor *functor)

void	AddActionFunction (const std::string &action, const ActionFunctionDelegate &delegate)

void	AddConditionFunction (const std::string &condition, const ConditionFunctionDelegate &delegate)

StateMachineState *	GetCurrentState () const

void	ResetToStartState ()
	ResetToStartState Reset state machine to it initial starting state. More...

virtual bool	CheckCondition (const StateMachineCondition &condition, const InteractionEvent *interactionEvent)

virtual void	ExecuteAction (StateMachineAction action, InteractionEvent interactionEvent)

void	SetMouseCursor (const char *xpm[], int hotspotX, int hotspotY)
	Sets the specified mouse cursor. More...

void	ResetMouseCursor ()
	Resets the mouse cursor (if modified by the SlicesCoordinator) to its original state. More...

StateMachineTransition *	GetExecutableTransition (InteractionEvent *event)
	Returns the executable transition for the given event. More...

Protected Member Functions inherited from mitk::InteractionEventHandler
	InteractionEventHandler ()

virtual	~InteractionEventHandler ()

PropertyList::Pointer	GetAttributes () const

std::string	MapToEventVariant (InteractionEvent *interactionEvent)

virtual void	ConfigurationChanged ()

Protected Attributes
int	m_PaintingPixelValue

Image::Pointer	m_WorkingSlice

Protected Attributes inherited from mitk::FeedbackContourTool
ContourModel::Pointer	m_FeedbackContour

DataNode::Pointer	m_FeedbackContourNode

bool	m_FeedbackContourVisible

Protected Attributes inherited from mitk::SegTool2D
BaseRenderer *	m_LastEventSender

unsigned int	m_LastEventSlice

Protected Attributes inherited from mitk::Tool
std::string	m_EventConfig
	Let subclasses change their event configuration. More...

ToolManager *	m_ToolManager

Protected Attributes inherited from mitk::EventStateMachine
bool	m_IsActive

UndoController *	m_UndoController

bool	m_UndoEnabled

Additional Inherited Members
Public Types inherited from mitk::Tool
typedef mitk::Label::PixelType	DefaultSegmentationDataType

Public Types inherited from mitk::EventStateMachine
typedef EventStateMachine	Self

typedef InteractionEventHandler	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef std::map< std::string, TActionFunctor * >	ActionFunctionsMapType

typedef itk::SmartPointer< StateMachineState >	StateMachineStateType

Public Types inherited from mitk::InteractionEventHandler
typedef InteractionEventHandler	Self

typedef itk::Object	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

Public Attributes inherited from mitk::Tool
Message	GUIProcessEventsMessage
	To let GUI process new events (e.g. qApp->processEvents() ) More...

Message1< std::string >	ErrorMessage
	To send error messages (to be shown by some GUI) More...

Message1< bool >	CurrentlyBusy
	To send whether the tool is busy (to be shown by some GUI) More...

Message1< std::string >	GeneralMessage
	To send general messages (to be shown by some GUI) More...

Protected Types inherited from mitk::EventStateMachine
typedef MessageAbstractDelegate2< StateMachineAction , InteractionEvent , void >	ActionFunctionDelegate

typedef MessageAbstractDelegate1< const InteractionEvent *, bool >	ConditionFunctionDelegate

Detailed Description

Corrector tool for 2D binary segmentations.

See also: FeedbackContourTool; ExtractImageFilter; OverwriteSliceImageFilter

Lets the user draw a (multi-point) line and intelligently decides what to do. The underlying algorithm tests if the line begins and ends inside or outside a segmentation and either adds or subtracts a piece of segmentation.

Algorithm is implemented in CorrectorAlgorithm (so that it could be reimplemented in a more modern fashion some time).

Warning: Only to be instantiated by mitk::ToolManager.

$Author$

Definition at line 56 of file mitkCorrectorTool2D.h.

Constructor & Destructor Documentation

mitk::CorrectorTool2D::CorrectorTool2D ( int paintingPixelValue = 1 )

protected

Definition at line 41 of file mitkCorrectorTool2D.cpp.

References mitk::FeedbackContourTool::GetFeedbackContour(), and mitk::ContourModel::SetClosed().

mitk::CorrectorTool2D::~CorrectorTool2D ( )

protectedvirtual

Definition at line 47 of file mitkCorrectorTool2D.cpp.

Member Function Documentation

void mitk::CorrectorTool2D::Activated ( )

overrideprotectedvirtual

Called when the tool gets activated.

Derived tools should call their parents implementation at the beginning of the overriding function.

Reimplemented from mitk::Tool.

Definition at line 82 of file mitkCorrectorTool2D.cpp.

Pointer mitk::CorrectorTool2D::Clone ( ) const

void mitk::CorrectorTool2D::ConnectActionsAndFunctions ( )

overrideprotectedvirtual

Is called after loading a statemachine. Overwrite this function in specific interactor implementations. Connect actions and functions using the CONNECT_FUNCTION macro within this function.

Reimplemented from mitk::EventStateMachine.

Definition at line 51 of file mitkCorrectorTool2D.cpp.

References CONNECT_FUNCTION.

void mitk::CorrectorTool2D::Deactivated ( )

overrideprotectedvirtual

Called when the tool gets deactivated.

Derived tools should call their parents implementation at the end of the overriding function.

Reimplemented from mitk::Tool.

Definition at line 87 of file mitkCorrectorTool2D.cpp.

us::ModuleResource mitk::CorrectorTool2D::GetCursorIconResource ( ) const

overridevirtual

Returns the path of a cursor icon.

Reimplemented from mitk::Tool.

Definition at line 70 of file mitkCorrectorTool2D.cpp.

References ModuleContext::GetModule(), us::GetModuleContext(), and us::Module::GetResource().

us::ModuleResource mitk::CorrectorTool2D::GetIconResource ( ) const

overridevirtual

Returns the tool button icon of the tool wrapped by a usModuleResource.

Returns: a valid ModuleResource or an invalid if this function is not reimplemented

Reimplemented from mitk::Tool.

Definition at line 63 of file mitkCorrectorTool2D.cpp.

References ModuleContext::GetModule(), us::GetModuleContext(), and us::Module::GetResource().

const char * mitk::CorrectorTool2D::GetName ( ) const

overridevirtual

Returns the name of this tool. Make it short!

This name has to fit into some kind of button in most applications, so take some time to think of a good name!

Implements mitk::Tool.

Definition at line 77 of file mitkCorrectorTool2D.cpp.

const char ** mitk::CorrectorTool2D::GetXPM ( ) const

overridevirtual

Returns an icon in the XPM format.

This icon has to fit into some kind of button in most applications, so make it smaller than 25x25 pixels.

XPM is e.g. supported by The Gimp. But if you open any XPM file in your text editor, you will see that you could also "draw" it with an editor.

Implements mitk::Tool.

Definition at line 58 of file mitkCorrectorTool2D.cpp.

mitk::CorrectorTool2D::mitkClassMacro	(	CorrectorTool2D	,
		FeedbackContourTool
	)

static Pointer mitk::CorrectorTool2D::New ( )

static

void mitk::CorrectorTool2D::OnMouseMoved	(	StateMachineAction *	,
		InteractionEvent *	interactionEvent
	)

protectedvirtual

Definition at line 112 of file mitkCorrectorTool2D.cpp.

References mitk::ContourModel::AddVertex(), mitk::FeedbackContourTool::GetFeedbackContour(), mitk::RenderingManager::GetInstance(), mitk::InteractionPositionEvent::GetPositionInWorld(), mitk::BaseRenderer::GetRenderWindow(), mitk::InteractionEvent::GetSender(), mitk::BaseRenderer::GetTimeStep(), and mitk::RenderingManager::RequestUpdate().

void mitk::CorrectorTool2D::OnMousePressed	(	StateMachineAction *	,
		InteractionEvent *	interactionEvent
	)

protectedvirtual

Definition at line 92 of file mitkCorrectorTool2D.cpp.

References mitk::ContourModel::AddVertex(), mitk::ContourModel::Expand(), mitk::FeedbackContourTool::GetFeedbackContour(), mitk::InteractionPositionEvent::GetPositionInWorld(), mitk::InteractionEvent::GetSender(), mitk::BaseRenderer::GetSlice(), mitk::BaseRenderer::GetTimeStep(), mitk::ContourModel::Initialize(), mitk::ContourModel::SetClosed(), and mitk::FeedbackContourTool::SetFeedbackContourVisible().

void mitk::CorrectorTool2D::OnMouseReleased	(	StateMachineAction *	,
		InteractionEvent *	interactionEvent
	)

protectedvirtual

Definition at line 127 of file mitkCorrectorTool2D.cpp.

References mitk::ContourModel::Begin(), mitk::ContourModel::End(), mitk::SegTool2D::GetAffectedImageSliceAs2DImage(), mitk::BaseRenderer::GetCurrentWorldPlaneGeometry(), mitk::FeedbackContourTool::GetFeedbackContour(), mitk::RenderingManager::GetInstance(), mitk::BaseRenderer::GetRenderWindow(), mitk::InteractionEvent::GetSender(), mitk::BaseRenderer::GetTimeStep(), MITK_ERROR, mitk::CorrectorAlgorithm::New(), mitk::ContourModel::New(), mitk::Image::New(), mitk::RenderingManager::RequestUpdate(), mitk::FeedbackContourTool::SetFeedbackContourVisible(), mitk::SegTool2D::WriteBackSegmentationResult(), and mitk::SegTool2D::WritePreviewOnWorkingImage().

Member Data Documentation

int mitk::CorrectorTool2D::m_PaintingPixelValue

protected

Definition at line 80 of file mitkCorrectorTool2D.h.

Image::Pointer mitk::CorrectorTool2D::m_WorkingSlice

protected

Definition at line 82 of file mitkCorrectorTool2D.h.

The documentation for this class was generated from the following files:

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation