Public Member Functions |
Static Public Member Functions |
Protected Member Functions |
Protected Attributes |
Static Protected Attributes |
List of all members
mitk::ThreeDnTDICOMSeriesReader Class Reference
Extends DICOMITKSeriesGDCMReader by sorting/grouping into 3D+t image blocks. More...
#include <mitkThreeDnTDICOMSeriesReader.h>
Inheritance diagram for mitk::ThreeDnTDICOMSeriesReader:
Collaboration diagram for mitk::ThreeDnTDICOMSeriesReader:
Public Member Functions | |
| mitkClassMacro (ThreeDnTDICOMSeriesReader, DICOMITKSeriesGDCMReader) | |
| mitkCloneMacro (ThreeDnTDICOMSeriesReader) | |
| mitkNewMacro1Param (ThreeDnTDICOMSeriesReader, unsigned int) | |
| void | SetGroup3DandT (bool on) |
| Control whether 3D+t grouping shall actually be attempted. More... | |
| bool | GetGroup3DandT () const |
| virtual void | OnlyCondenseSameSeriesOn () |
| virtual void | OnlyCondenseSameSeriesOff () |
| virtual void | SetOnlyCondenseSameSeries (bool _arg) |
| virtual bool | GetOnlyCondenseSameSeries () const |
| bool | LoadImages () override |
| Load via multiple calls to itk::ImageSeriesReader. More... | |
| bool | operator== (const DICOMFileReader &other) const override |
 Public Member Functions inherited from mitk::DICOMITKSeriesGDCMReader | |
| mitkClassMacro (DICOMITKSeriesGDCMReader, DICOMFileReader) | |
| mitkCloneMacro (DICOMITKSeriesGDCMReader) | |
| mitkNewMacro1Param (DICOMITKSeriesGDCMReader, unsigned int) | |
| mitkNewMacro2Param (DICOMITKSeriesGDCMReader, unsigned int, bool) | |
| void | AnalyzeInputFiles () override |
| Runs the sorting / splitting process described in Loading strategy. Method required by DICOMFileReader. More... | |
| bool | CanHandleFile (const std::string &filename) override |
| Indicate whether this reader can handle given file. More... | |
| virtual void | AddSortingElement (DICOMDatasetSorter *sorter, bool atFront=false) |
| Add an element to the sorting procedure described in Loading strategy. More... | |
| ConstSorterList | GetFreelyConfiguredSortingElements () const |
| void | SetFixTiltByShearing (bool on) |
| Controls whether to "fix" tilted acquisitions by shearing the output (see Gantry tilt handling). More... | |
| bool | GetFixTiltByShearing () const |
| void | SetAcceptTwoSlicesGroups (bool accept) const |
| Controls whether groups of only two images are accepted when ensuring consecutive slices via EquiDistantBlocksSorter. More... | |
| bool | GetAcceptTwoSlicesGroups () const |
| void | SetToleratedOriginOffsetToAdaptive (double fractionOfInterSliceDistanct=0.3) const |
| See Forced Configuration. More... | |
| void | SetToleratedOriginOffset (double millimeters=0.005) const |
| See Forced Configuration. More... | |
| void | SetSimpleVolumeReading (bool read) |
| Ignore all dicom tags that are non-essential for simple 3D volume import. More... | |
| bool | GetSimpleVolumeReading () |
| Ignore all dicom tags that are non-essential for simple 3D volume import. More... | |
| double | GetToleratedOriginError () const |
| bool | IsToleratedOriginOffsetAbsolute () const |
| double | GetDecimalPlacesForOrientation () const |
| DICOMTagPathList | GetTagsOfInterest () const override |
| Public Member Functions inherited from mitk::DICOMFileReader | |
| mitkClassMacroItkParent (DICOMFileReader, itk::Object) | |
| void | SetInputFiles (const StringList &filenames) |
| This input files. More... | |
| const StringList & | GetInputFiles () const |
| This input files. More... | |
| unsigned int | GetNumberOfOutputs () const |
| Number of outputs, only meaningful after calling AnalyzeInputFiles() More... | |
| const DICOMImageBlockDescriptor & | GetOutput (unsigned int index) const |
| Individual outputs, only meaningful after calling AnalyzeInputFiles(). More... | |
| void | SetConfigurationLabel (const std::string &) |
| Short label/name to describe this reader. More... | |
| std::string | GetConfigurationLabel () const |
| Short label/name to describe this reader. More... | |
| void | SetConfigurationDescription (const std::string &) |
| One-sentence description of the reader's loading "strategy". More... | |
| std::string | GetConfigurationDescription () const |
| One-sentence description of the reader's loading "strategy". More... | |
| void | PrintConfiguration (std::ostream &os) const |
| Print configuration description to given stream, for human reader. More... | |
| void | PrintOutputs (std::ostream &os, bool filenameDetails=false) const |
| Print output description to given stream, for human reader. More... | |
| virtual void | SetAdditionalTagsOfInterest (const AdditionalTagsMapType &tagList) |
| Set a list of DICOMTagPaths that specify all DICOM-Tags that will be copied into the property of the mitk::Image. More... | |
| virtual void | SetTagLookupTableToPropertyFunctor (mitk::DICOMImageBlockDescriptor::TagLookupTableToPropertyFunctor functor) |
| Set a functor that defines how the slice-specific tag-values are stored in a Property. More... | |
Static Public Member Functions | |
| static Pointer | New () |
| static bool | GetDefaultGroup3DandT () |
| static bool | GetDefaultOnlyCondenseSameSeries () |
| Static Public Member Functions inherited from mitk::DICOMITKSeriesGDCMReader | |
| static Pointer | New () |
| static int | GetDefaultDecimalPlacesForOrientation () |
| static bool | GetDefaultSimpleVolumeImport () |
| static bool | GetDefaultFixTiltByShearing () |
| Static Public Member Functions inherited from mitk::DICOMFileReader | |
| static bool | IsDICOM (const std::string &filename) |
| Test whether a file is DICOM at all. More... | |
Protected Member Functions | |
| ThreeDnTDICOMSeriesReader (unsigned int decimalPlacesForOrientation=Superclass::m_DefaultDecimalPlacesForOrientation) | |
| ~ThreeDnTDICOMSeriesReader () override | |
| ThreeDnTDICOMSeriesReader (const ThreeDnTDICOMSeriesReader &other) | |
| ThreeDnTDICOMSeriesReader & | operator= (const ThreeDnTDICOMSeriesReader &other) |
| SortingBlockList | Condense3DBlocks (SortingBlockList &) override |
| Analyze the groups produced by DICOMITKSeriesGDCMReader for 3D+t properties. This method tests whether some blocks are at the same spatial position and groups them into single blocks. More... | |
| bool | LoadMitkImageForImageBlockDescriptor (DICOMImageBlockDescriptor &block) const override |
| Protected Member Functions inherited from mitk::DICOMITKSeriesGDCMReader | |
| void | InternalPrintConfiguration (std::ostream &os) const override |
| Configuration description for human reader, to be implemented by sub-classes. More... | |
| void | PushLocale () const |
| Remember current locale on stack, activate "C" locale. "C" locale is required for correct parsing of numbers by itk::ImageSeriesReader. More... | |
| void | PopLocale () const |
| Activate last remembered locale from locale stack "C" locale is required for correct parsing of numbers by itk::ImageSeriesReader. More... | |
| DICOMITKSeriesGDCMReader (unsigned int decimalPlacesForOrientation=m_DefaultDecimalPlacesForOrientation, bool simpleVolumeImport=m_DefaultSimpleVolumeImport) | |
| ~DICOMITKSeriesGDCMReader () override | |
| DICOMITKSeriesGDCMReader (const DICOMITKSeriesGDCMReader &other) | |
| DICOMITKSeriesGDCMReader & | operator= (const DICOMITKSeriesGDCMReader &other) |
| virtual DICOMTagCache::Pointer | GetTagCache () const |
| void | SetTagCache (const DICOMTagCache::Pointer &) override |
| A way to provide external knowledge about files and tag values is appreciated. More... | |
| virtual bool | LoadMitkImageForOutput (unsigned int o) |
| Loads the mitk::Image by means of an itk::ImageSeriesReader. More... | |
| Protected Member Functions inherited from mitk::DICOMFileReader | |
| DICOMFileReader () | |
| ~DICOMFileReader () override | |
| DICOMFileReader (const DICOMFileReader &other) | |
| DICOMFileReader & | operator= (const DICOMFileReader &other) |
| void | ClearOutputs () |
| void | SetNumberOfOutputs (unsigned int numberOfOutputs) |
| void | SetOutput (unsigned int index, const DICOMImageBlockDescriptor &output) |
| DICOMImageBlockDescriptor & | InternalGetOutput (unsigned int index) |
| non-const access to the DICOMImageBlockDescriptor More... | |
| virtual AdditionalTagsMapType | GetAdditionalTagsOfInterest () const |
| mitk::DICOMImageBlockDescriptor::TagLookupTableToPropertyFunctor | GetTagLookupTableToPropertyFunctor () const |
Protected Attributes | |
| bool | m_Group3DandT |
| bool | m_OnlyCondenseSameSeries |
| Protected Attributes inherited from mitk::DICOMITKSeriesGDCMReader | |
| bool | m_FixTiltByShearing |
| bool | m_SimpleVolumeReading |
| mitk::EquiDistantBlocksSorter::Pointer | m_EquiDistantBlocksSorter |
| mitk::NormalDirectionConsistencySorter::Pointer | m_NormalDirectionConsistencySorter |
Static Protected Attributes | |
| const static bool | m_DefaultGroup3DandT |
| const static bool | m_DefaultOnlyCondenseSameSeries |
| Static Protected Attributes inherited from mitk::DICOMITKSeriesGDCMReader | |
| const static int | m_DefaultDecimalPlacesForOrientation |
| const static bool | m_DefaultSimpleVolumeImport |
| const static bool | m_DefaultFixTiltByShearing |
Additional Inherited Members | |
| Public Types inherited from mitk::DICOMFileReader | |
| typedef DICOMImageBlockDescriptor::AdditionalTagsMapType | AdditionalTagsMapType |
| Public Attributes inherited from mitk::DICOMITKSeriesGDCMReader | |
| const typedef std::list< DICOMDatasetSorter::ConstPointer > | ConstSorterList |
| Protected Types inherited from mitk::DICOMITKSeriesGDCMReader | |
| using | SortingBlockListItemType = std::pair< DICOMDatasetAccessingImageFrameList, IOVolumeSplitReason::Pointer > |
| using | SortingBlockList = std::vector< SortingBlockListItemType > |
| Static Protected Member Functions inherited from mitk::DICOMITKSeriesGDCMReader | |
| static std::string | GetActiveLocale () |
| Return active C locale. More... | |
| static SortingBlockList | InternalExecuteSortingStep (unsigned int sortingStepIndex, const DICOMDatasetSorter::Pointer &sorter, const SortingBlockList &input) |
| Sorting step as described in Loading strategy. More... | |
| static ReaderImplementationLevel | GetReaderImplementationLevel (const std::string sopClassUID) |
| Describe this reader's confidence for given SOP class UID. More... | |
Detailed Description
Extends DICOMITKSeriesGDCMReader by sorting/grouping into 3D+t image blocks.
This class reuses the DICOMITKSeriesGDCMReader class and adds the option of grouping 3D blocks at the same spatial position into a single block, which is loaded as a 3D+t mitk::Image (compare to Sub-classes can condense multiple blocks into a single larger block).
To group two output blocks into a single 3D+t block, this class tests a number of requirements that the two blocks must fulfill:
- the origin of the first slice must be identical
- the origin of the last slice must be identical
- the number of slices must be identical
The output blocks described by DICOMImageBlockDescriptor will contains the following properties:
- "3D+t": true if the image is 3D+t
- "timesteps": number of timesteps of an image (only defined if "3D+t" is true)
Definition at line 41 of file mitkThreeDnTDICOMSeriesReader.h.
Constructor & Destructor Documentation
◆ ThreeDnTDICOMSeriesReader() [1/2]
|
protected |
◆ ~ThreeDnTDICOMSeriesReader()
|
overrideprotected |
◆ ThreeDnTDICOMSeriesReader() [2/2]
|
protected |
Member Function Documentation
◆ Condense3DBlocks()
|
overrideprotectedvirtual |
Analyze the groups produced by DICOMITKSeriesGDCMReader for 3D+t properties. This method tests whether some blocks are at the same spatial position and groups them into single blocks.
Reimplemented from mitk::DICOMITKSeriesGDCMReader.
◆ GetDefaultGroup3DandT()
|
inlinestatic |
Definition at line 64 of file mitkThreeDnTDICOMSeriesReader.h.
◆ GetDefaultOnlyCondenseSameSeries()
|
inlinestatic |
Definition at line 68 of file mitkThreeDnTDICOMSeriesReader.h.
◆ GetGroup3DandT()
| bool mitk::ThreeDnTDICOMSeriesReader::GetGroup3DandT | ( | ) | const |
◆ GetOnlyCondenseSameSeries()
|
virtual |
◆ LoadImages()
|
overridevirtual |
Load via multiple calls to itk::ImageSeriesReader.
Reimplemented from mitk::DICOMITKSeriesGDCMReader.
◆ LoadMitkImageForImageBlockDescriptor()
|
overrideprotectedvirtual |
Reimplemented from mitk::DICOMITKSeriesGDCMReader.
◆ mitkClassMacro()
| mitk::ThreeDnTDICOMSeriesReader::mitkClassMacro | ( | ThreeDnTDICOMSeriesReader | , |
| DICOMITKSeriesGDCMReader | |||
| ) |
◆ mitkCloneMacro()
| mitk::ThreeDnTDICOMSeriesReader::mitkCloneMacro | ( | ThreeDnTDICOMSeriesReader | ) |
◆ mitkNewMacro1Param()
| mitk::ThreeDnTDICOMSeriesReader::mitkNewMacro1Param | ( | ThreeDnTDICOMSeriesReader | , |
| unsigned int | |||
| ) |
◆ New()
|
static |
◆ OnlyCondenseSameSeriesOff()
|
virtual |
◆ OnlyCondenseSameSeriesOn()
|
virtual |
◆ operator=()
|
protected |
◆ operator==()
|
overridevirtual |
Reimplemented from mitk::DICOMITKSeriesGDCMReader.
◆ SetGroup3DandT()
| void mitk::ThreeDnTDICOMSeriesReader::SetGroup3DandT | ( | bool | on | ) |
Control whether 3D+t grouping shall actually be attempted.
◆ SetOnlyCondenseSameSeries()
|
virtual |
Member Data Documentation
◆ m_DefaultGroup3DandT
|
staticprotected |
Definition at line 93 of file mitkThreeDnTDICOMSeriesReader.h.
◆ m_DefaultOnlyCondenseSameSeries
|
staticprotected |
Definition at line 94 of file mitkThreeDnTDICOMSeriesReader.h.
◆ m_Group3DandT
|
protected |
Definition at line 90 of file mitkThreeDnTDICOMSeriesReader.h.
◆ m_OnlyCondenseSameSeries
|
protected |
Definition at line 91 of file mitkThreeDnTDICOMSeriesReader.h.
The documentation for this class was generated from the following file:
