Flexible reader based on itk::ImageSeriesReader and GDCM, for single-slice modalities like CT, MR, PET, CR, etc. More...

#include <mitkDICOMITKSeriesGDCMReader.h>

Inheritance diagram for mitk::DICOMITKSeriesGDCMReader:

[legend]

Collaboration diagram for mitk::DICOMITKSeriesGDCMReader:

[legend]

Public Member Functions
	mitkClassMacro (DICOMITKSeriesGDCMReader, DICOMFileReader)

	mitkCloneMacro (DICOMITKSeriesGDCMReader)

	mitkNewMacro1Param (DICOMITKSeriesGDCMReader, unsigned int)

	mitkNewMacro2Param (DICOMITKSeriesGDCMReader, unsigned int, bool)

void	AnalyzeInputFiles () override
	Runs the sorting / splitting process described in Loading strategy. Method required by DICOMFileReader. More...

bool	LoadImages () override
	Loads images using itk::ImageSeriesReader, potentially applies shearing to correct gantry tilt. More...

bool	CanHandleFile (const std::string &filename) override
	Indicate whether this reader can handle given file. More...

virtual void	AddSortingElement (DICOMDatasetSorter *sorter, bool atFront=false)
	Add an element to the sorting procedure described in Loading strategy. More...

ConstSorterList	GetFreelyConfiguredSortingElements () const

void	SetFixTiltByShearing (bool on)
	Controls whether to "fix" tilted acquisitions by shearing the output (see Gantry tilt handling). More...

bool	GetFixTiltByShearing () const

void	SetAcceptTwoSlicesGroups (bool accept) const
	Controls whether groups of only two images are accepted when ensuring consecutive slices via EquiDistantBlocksSorter. More...

bool	GetAcceptTwoSlicesGroups () const

void	SetToleratedOriginOffsetToAdaptive (double fractionOfInterSliceDistanct=0.3) const
	See Forced Configuration. More...

void	SetToleratedOriginOffset (double millimeters=0.005) const
	See Forced Configuration. More...

void	SetSimpleVolumeReading (bool read)
	Ignore all dicom tags that are non-essential for simple 3D volume import. More...

bool	GetSimpleVolumeReading ()
	Ignore all dicom tags that are non-essential for simple 3D volume import. More...

double	GetToleratedOriginError () const

bool	IsToleratedOriginOffsetAbsolute () const

double	GetDecimalPlacesForOrientation () const

bool	operator== (const DICOMFileReader &other) const override

DICOMTagPathList	GetTagsOfInterest () const override

Public Member Functions inherited from mitk::DICOMFileReader
	mitkClassMacroItkParent (DICOMFileReader, itk::Object)

void	SetInputFiles (const StringList &filenames)
	This input files. More...

const StringList &	GetInputFiles () const
	This input files. More...

unsigned int	GetNumberOfOutputs () const
	Number of outputs, only meaningful after calling AnalyzeInputFiles() More...

const DICOMImageBlockDescriptor &	GetOutput (unsigned int index) const
	Individual outputs, only meaningful after calling AnalyzeInputFiles(). More...

void	SetConfigurationLabel (const std::string &)
	Short label/name to describe this reader. More...

std::string	GetConfigurationLabel () const
	Short label/name to describe this reader. More...

void	SetConfigurationDescription (const std::string &)
	One-sentence description of the reader's loading "strategy". More...

std::string	GetConfigurationDescription () const
	One-sentence description of the reader's loading "strategy". More...

void	PrintConfiguration (std::ostream &os) const
	Print configuration description to given stream, for human reader. More...

void	PrintOutputs (std::ostream &os, bool filenameDetails=false) const
	Print output description to given stream, for human reader. More...

virtual void	SetAdditionalTagsOfInterest (const AdditionalTagsMapType &tagList)
	Set a list of DICOMTagPaths that specify all DICOM-Tags that will be copied into the property of the mitk::Image. More...

virtual void	SetTagLookupTableToPropertyFunctor (mitk::DICOMImageBlockDescriptor::TagLookupTableToPropertyFunctor functor)
	Set a functor that defines how the slice-specific tag-values are stored in a Property. More...

Static Public Member Functions
static Pointer	New ()

static int	GetDefaultDecimalPlacesForOrientation ()

static bool	GetDefaultSimpleVolumeImport ()

static bool	GetDefaultFixTiltByShearing ()

Static Public Member Functions inherited from mitk::DICOMFileReader
static bool	IsDICOM (const std::string &filename)
	Test whether a file is DICOM at all. More...

Public Attributes
const typedef std::list< DICOMDatasetSorter::ConstPointer >	ConstSorterList

Protected Types
using	SortingBlockListItemType = std::pair< DICOMDatasetAccessingImageFrameList, IOVolumeSplitReason::Pointer >

using	SortingBlockList = std::vector< SortingBlockListItemType >

Protected Member Functions
void	InternalPrintConfiguration (std::ostream &os) const override
	Configuration description for human reader, to be implemented by sub-classes. More...

void	PushLocale () const
	Remember current locale on stack, activate "C" locale. "C" locale is required for correct parsing of numbers by itk::ImageSeriesReader. More...

void	PopLocale () const
	Activate last remembered locale from locale stack "C" locale is required for correct parsing of numbers by itk::ImageSeriesReader. More...

	DICOMITKSeriesGDCMReader (unsigned int decimalPlacesForOrientation=m_DefaultDecimalPlacesForOrientation, bool simpleVolumeImport=m_DefaultSimpleVolumeImport)

	~DICOMITKSeriesGDCMReader () override

	DICOMITKSeriesGDCMReader (const DICOMITKSeriesGDCMReader &other)

DICOMITKSeriesGDCMReader &	operator= (const DICOMITKSeriesGDCMReader &other)

virtual SortingBlockList	Condense3DBlocks (SortingBlockList &resultOf3DGrouping)
	"Hook" for sub-classes, see Sub-classes can condense multiple blocks into a single larger block More...

virtual DICOMTagCache::Pointer	GetTagCache () const

void	SetTagCache (const DICOMTagCache::Pointer &) override
	A way to provide external knowledge about files and tag values is appreciated. More...

virtual bool	LoadMitkImageForOutput (unsigned int o)
	Loads the mitk::Image by means of an itk::ImageSeriesReader. More...

virtual bool	LoadMitkImageForImageBlockDescriptor (DICOMImageBlockDescriptor &block) const

Protected Member Functions inherited from mitk::DICOMFileReader
	DICOMFileReader ()

	~DICOMFileReader () override

	DICOMFileReader (const DICOMFileReader &other)

DICOMFileReader &	operator= (const DICOMFileReader &other)

void	ClearOutputs ()

void	SetNumberOfOutputs (unsigned int numberOfOutputs)

void	SetOutput (unsigned int index, const DICOMImageBlockDescriptor &output)

DICOMImageBlockDescriptor &	InternalGetOutput (unsigned int index)
	non-const access to the DICOMImageBlockDescriptor More...

virtual AdditionalTagsMapType	GetAdditionalTagsOfInterest () const

mitk::DICOMImageBlockDescriptor::TagLookupTableToPropertyFunctor	GetTagLookupTableToPropertyFunctor () const

Static Protected Member Functions
static std::string	GetActiveLocale ()
	Return active C locale. More...

static SortingBlockList	InternalExecuteSortingStep (unsigned int sortingStepIndex, const DICOMDatasetSorter::Pointer &sorter, const SortingBlockList &input)
	Sorting step as described in Loading strategy. More...

static ReaderImplementationLevel	GetReaderImplementationLevel (const std::string sopClassUID)
	Describe this reader's confidence for given SOP class UID. More...

Protected Attributes
bool	m_FixTiltByShearing

bool	m_SimpleVolumeReading

mitk::EquiDistantBlocksSorter::Pointer	m_EquiDistantBlocksSorter

mitk::NormalDirectionConsistencySorter::Pointer	m_NormalDirectionConsistencySorter

Static Protected Attributes
const static int	m_DefaultDecimalPlacesForOrientation

const static bool	m_DefaultSimpleVolumeImport

const static bool	m_DefaultFixTiltByShearing

Additional Inherited Members
Public Types inherited from mitk::DICOMFileReader
typedef DICOMImageBlockDescriptor::AdditionalTagsMapType	AdditionalTagsMapType

Detailed Description

Flexible reader based on itk::ImageSeriesReader and GDCM, for single-slice modalities like CT, MR, PET, CR, etc.

Implements the loading processed as structured by DICOMFileReader offers configuration of its loading strategy.

Documentation sections:

Loading strategy

The set of input files is processed by a number of DICOMDatasetSorter objects which may do two sort of things:

split a list of input frames into multiple lists, based on DICOM tags such as "Rows", "Columns", which cannot be mixed within a single mitk::Image
sort the frames within the input lists, based on the values of DICOM tags such as "Image Position Patient"

When the DICOMITKSeriesGDCMReader is configured with DICOMDatasetSorters, the list of input files is processed as follows:

build an initial set of output groups, simply by grouping all input files.
for each configured DICOMDatasetSorter, process:
- for each output group:
  1. set this group's files as input to the sorter
  2. let the sorter sort (and split)
  3. integrate the sorter's output groups with our own output groups

Forced Configuration

In all cases, the reader will add two DICOMDatasetSorter objects that are required to load mitk::Images properly via itk::ImageSeriesReader:

As a first step, the input files will be split into groups that are not compatible because they differ in essential aspects:
- (0028,0010) Number of Rows
- (0028,0011) Number of Columns
- (0028,0030) Pixel Spacing
- (0018,1164) Imager Pixel Spacing
- (0020,0037) Image Orientation (Patient)
- (0018,0050) Slice Thickness
- (0028,0008) Number of Frames
As are two forced last steps:
1. There will always be an instance of EquiDistantBlocksSorter, which ensures that there is an equal distance between all the frames of an Image. This is required to achieve correct geometrical positions in the mitk::Image, i.e. it is essential to be able to make measurements in images.
  - whether or not the distance is required to be orthogonal to the image planes is configured by SetFixTiltByShearing().
  - during this check, we need to tolerate some minor errors in documented vs. calculated image origins. The amount of tolerance can be adjusted by SetToleratedOriginOffset() and SetToleratedOriginOffsetToAdaptive(). Please see EquiDistantBlocksSorter for more details. The default should be good for most cases.
2. There is always an instance of NormalDirectionConsistencySorter, which makes the order of images go along the image normals (see NormalDirectionConsistencySorter)

User Configuration

The user of this class can add more sorting steps (similar to the one described in above section) by calling AddSortingElement().

Usually, an application will add sorting by "Image Position Patient", by "Instance Number", and by other relevant tags here.

Gantry tilt handling

When CT gantry tilt is used, the gantry plane (= X-Ray source and detector ring) and the vertical plane do not align anymore. This scanner feature is used for example to reduce metal artifacts (e.g. Lee C , Evaluation of Using CT Gantry Tilt Scan on Head and Neck Cancer Patients with Dental Structure: Scans Show Less Metal Artifacts. Presented at: Radiological Society of North America 2011 Scientific Assembly and Annual Meeting; November 27- December 2, 2011 Chicago IL.).

The acquired planes of such CT series do not match the expectations of a orthogonal geometry in mitk::Image: if you stack the slices, they show a small shift along the Y axis:

    without tilt       with tilt

      ||||||             //////
      ||||||            //////
  --  |||||| --------- ////// -------- table orientation
      ||||||          //////
      ||||||         //////

  Stacked slices:

    without tilt       with tilt

   --------------    --------------
   --------------     --------------
   --------------      --------------
   --------------       --------------
   --------------        --------------

As such gemetries do not "work" in conjunction with mitk::Image, DICOMITKSeriesGDCMReader is able to perform a correction for such series. Whether or not such correction should be attempted is controlled by SetFixTiltByShearing(), the default being correction. For details, see "Internals" below.

Testing

A number of tests is implemented in module DICOMTesting, which is documented at MITK DICOM testing.

Class internals

Internally, the class is based on GDCM and it depends heavily on the gdcm::Scanner class.

Since the sorting elements (see DICOMDatasetSorter and DICOMSortCriterion) can access tags only via the DICOMDatasetAccess interface, BUT DICOMITKSeriesGDCMReader holds a list of more specific classes DICOMGDCMImageFrameInfo, we must convert between the two types sometimes. This explains the methods ToDICOMDatasetList(), FromDICOMDatasetList().

The intermediate result of all the sorting efforts is held in m_SortingResultInProgress, which is modified through InternalExecuteSortingStep().

Overview of related classes

The following diagram gives an overview of the related classes:

Details about the tilt correction

The gantry tilt "correction" algorithm fixes two errors introduced by ITK's ImageSeriesReader:

the plane shift that is ignored by ITK's reader is recreated by applying a shearing transformation using itk::ResampleFilter.
the spacing is corrected (it is calculated by ITK's reader from the distance between two origins, which is NOT the slice distance in this special case)

Both errors are introduced in itkImageSeriesReader.txx (ImageSeriesReader<TOutputImage>::GenerateOutputInformation(void)), lines 176 to 245 (as of ITK 3.20)

For the correction, we examine two consecutive slices of a series, both described as a pair (origin/orientation):

we calculate if the first origin is on a line along the normal of the second slice
- if this is not the case, the geometry will not fit a normal mitk::Image/mitk::Geometry3D
- we then project the second origin into the first slice's coordinate system to quantify the shift
- both is done in class GantryTiltInformation with quite some comments.

The geometry of image stacks with tilted geometries is illustrated below:

green: the DICOM images as described by their tags: origin as a point with the line indicating the orientation
red: the output of ITK ImageSeriesReader: wrong, larger spacing, no tilt
blue: how much a shear must correct

Sub-classes can condense multiple blocks into a single larger block

The sorting/splitting process described above is helpful for at least two more DICOM readers, which either try to load 3D+t images or which load diffusion data.

In both cases, a single pixel of the mitk::Image is made up of multiple values, in one case values over time, in the other case multiple measurements of a single point.

The specialized readers for these cases (e.g. ThreeDnTDICOMSeriesReader) can reuse most of the methods in DICOMITKSeriesGDCMReader, except that they need an extra step after the usual sorting, in which they can merge already grouped 3D blocks. What blocks are merged depends on the specialized reader's understanding of these images. To allow for such merging, a method Condense3DBlocks() is called as an absolute last step of AnalyzeInputFiles(). Given this, a sub-class could implement only LoadImages() and Condense3DBlocks() instead repeating most of AnalyzeInputFiles().

Definition at line 190 of file mitkDICOMITKSeriesGDCMReader.h.

Member Typedef Documentation

◆ SortingBlockList

using mitk::DICOMITKSeriesGDCMReader::SortingBlockList = std::vector<SortingBlockListItemType>

protected

Definition at line 314 of file mitkDICOMITKSeriesGDCMReader.h.

◆ SortingBlockListItemType

using mitk::DICOMITKSeriesGDCMReader::SortingBlockListItemType = std::pair<DICOMDatasetAccessingImageFrameList, IOVolumeSplitReason::Pointer>

protected

Definition at line 313 of file mitkDICOMITKSeriesGDCMReader.h.

Constructor & Destructor Documentation

◆ DICOMITKSeriesGDCMReader() [1/2]

mitk::DICOMITKSeriesGDCMReader::DICOMITKSeriesGDCMReader	(	unsigned int	decimalPlacesForOrientation = `m_DefaultDecimalPlacesForOrientation`,
		bool	simpleVolumeImport = `m_DefaultSimpleVolumeImport`
	)

protected

◆ ~DICOMITKSeriesGDCMReader()

mitk::DICOMITKSeriesGDCMReader::~DICOMITKSeriesGDCMReader ( )

overrideprotected

◆ DICOMITKSeriesGDCMReader() [2/2]

mitk::DICOMITKSeriesGDCMReader::DICOMITKSeriesGDCMReader ( const DICOMITKSeriesGDCMReader & other )

protected

Member Function Documentation

◆ AddSortingElement()

virtual void mitk::DICOMITKSeriesGDCMReader::AddSortingElement	(	DICOMDatasetSorter *	sorter,
		bool	atFront = `false`
	)

virtual

Add an element to the sorting procedure described in Loading strategy.

◆ AnalyzeInputFiles()

void mitk::DICOMITKSeriesGDCMReader::AnalyzeInputFiles ( )

overridevirtual

Runs the sorting / splitting process described in Loading strategy. Method required by DICOMFileReader.

Implements mitk::DICOMFileReader.

◆ CanHandleFile()

bool mitk::DICOMITKSeriesGDCMReader::CanHandleFile ( const std::string & filename )

overridevirtual

Indicate whether this reader can handle given file.

Implements mitk::DICOMFileReader.

◆ Condense3DBlocks()

virtual SortingBlockList mitk::DICOMITKSeriesGDCMReader::Condense3DBlocks ( SortingBlockList & resultOf3DGrouping )

protectedvirtual

"Hook" for sub-classes, see Sub-classes can condense multiple blocks into a single larger block

Returns: REMAINING blocks

Reimplemented in mitk::ThreeDnTDICOMSeriesReader.

◆ GetAcceptTwoSlicesGroups()

bool mitk::DICOMITKSeriesGDCMReader::GetAcceptTwoSlicesGroups ( ) const

◆ GetActiveLocale()

static std::string mitk::DICOMITKSeriesGDCMReader::GetActiveLocale ( )

staticprotected

Return active C locale.

◆ GetDecimalPlacesForOrientation()

double mitk::DICOMITKSeriesGDCMReader::GetDecimalPlacesForOrientation ( ) const

◆ GetDefaultDecimalPlacesForOrientation()

static int mitk::DICOMITKSeriesGDCMReader::GetDefaultDecimalPlacesForOrientation ( )

inlinestatic

Definition at line 271 of file mitkDICOMITKSeriesGDCMReader.h.

◆ GetDefaultFixTiltByShearing()

static bool mitk::DICOMITKSeriesGDCMReader::GetDefaultFixTiltByShearing ( )

inlinestatic

Definition at line 281 of file mitkDICOMITKSeriesGDCMReader.h.

◆ GetDefaultSimpleVolumeImport()

static bool mitk::DICOMITKSeriesGDCMReader::GetDefaultSimpleVolumeImport ( )

inlinestatic

Definition at line 276 of file mitkDICOMITKSeriesGDCMReader.h.

◆ GetFixTiltByShearing()

bool mitk::DICOMITKSeriesGDCMReader::GetFixTiltByShearing ( ) const

◆ GetFreelyConfiguredSortingElements()

ConstSorterList mitk::DICOMITKSeriesGDCMReader::GetFreelyConfiguredSortingElements ( ) const

◆ GetReaderImplementationLevel()

static ReaderImplementationLevel mitk::DICOMITKSeriesGDCMReader::GetReaderImplementationLevel ( const std::string sopClassUID )

staticprotected

Describe this reader's confidence for given SOP class UID.

◆ GetSimpleVolumeReading()

bool mitk::DICOMITKSeriesGDCMReader::GetSimpleVolumeReading ( )

inline

Ignore all dicom tags that are non-essential for simple 3D volume import.

Definition at line 257 of file mitkDICOMITKSeriesGDCMReader.h.

◆ GetTagCache()

virtual DICOMTagCache::Pointer mitk::DICOMITKSeriesGDCMReader::GetTagCache ( ) const

protectedvirtual

◆ GetTagsOfInterest()

DICOMTagPathList mitk::DICOMITKSeriesGDCMReader::GetTagsOfInterest ( ) const

overridevirtual

Implements mitk::DICOMFileReader.

◆ GetToleratedOriginError()

double mitk::DICOMITKSeriesGDCMReader::GetToleratedOriginError ( ) const

◆ InternalExecuteSortingStep()

static SortingBlockList mitk::DICOMITKSeriesGDCMReader::InternalExecuteSortingStep	(	unsigned int	sortingStepIndex,
		const DICOMDatasetSorter::Pointer &	sorter,
		const SortingBlockList &	input
	)

staticprotected

Sorting step as described in Loading strategy.

◆ InternalPrintConfiguration()

void mitk::DICOMITKSeriesGDCMReader::InternalPrintConfiguration ( std::ostream & os ) const

overrideprotectedvirtual

Configuration description for human reader, to be implemented by sub-classes.

Implements mitk::DICOMFileReader.

◆ IsToleratedOriginOffsetAbsolute()

bool mitk::DICOMITKSeriesGDCMReader::IsToleratedOriginOffsetAbsolute ( ) const

◆ LoadImages()

bool mitk::DICOMITKSeriesGDCMReader::LoadImages ( )

overridevirtual

Loads images using itk::ImageSeriesReader, potentially applies shearing to correct gantry tilt.

Implements mitk::DICOMFileReader.

Reimplemented in mitk::ThreeDnTDICOMSeriesReader.

◆ LoadMitkImageForImageBlockDescriptor()

virtual bool mitk::DICOMITKSeriesGDCMReader::LoadMitkImageForImageBlockDescriptor ( DICOMImageBlockDescriptor & block ) const

protectedvirtual

Reimplemented in mitk::ThreeDnTDICOMSeriesReader.

◆ LoadMitkImageForOutput()

virtual bool mitk::DICOMITKSeriesGDCMReader::LoadMitkImageForOutput ( unsigned int o )

protectedvirtual

Loads the mitk::Image by means of an itk::ImageSeriesReader.

◆ mitkClassMacro()

mitk::DICOMITKSeriesGDCMReader::mitkClassMacro	(	DICOMITKSeriesGDCMReader	,
		DICOMFileReader
	)

◆ mitkCloneMacro()

mitk::DICOMITKSeriesGDCMReader::mitkCloneMacro ( DICOMITKSeriesGDCMReader )

◆ mitkNewMacro1Param()

mitk::DICOMITKSeriesGDCMReader::mitkNewMacro1Param	(	DICOMITKSeriesGDCMReader	,
		unsigned int
	)

◆ mitkNewMacro2Param()

mitk::DICOMITKSeriesGDCMReader::mitkNewMacro2Param	(	DICOMITKSeriesGDCMReader	,
		unsigned int	,
		bool
	)

◆ New()

static Pointer mitk::DICOMITKSeriesGDCMReader::New ( )

static

◆ operator=()

DICOMITKSeriesGDCMReader& mitk::DICOMITKSeriesGDCMReader::operator= ( const DICOMITKSeriesGDCMReader & other )

protected

◆ operator==()

bool mitk::DICOMITKSeriesGDCMReader::operator== ( const DICOMFileReader & other ) const

overridevirtual

Implements mitk::DICOMFileReader.

Reimplemented in mitk::ThreeDnTDICOMSeriesReader.

◆ PopLocale()

void mitk::DICOMITKSeriesGDCMReader::PopLocale ( ) const

protected

Activate last remembered locale from locale stack "C" locale is required for correct parsing of numbers by itk::ImageSeriesReader.

◆ PushLocale()

void mitk::DICOMITKSeriesGDCMReader::PushLocale ( ) const

protected

Remember current locale on stack, activate "C" locale. "C" locale is required for correct parsing of numbers by itk::ImageSeriesReader.

◆ SetAcceptTwoSlicesGroups()

void mitk::DICOMITKSeriesGDCMReader::SetAcceptTwoSlicesGroups ( bool accept ) const

Controls whether groups of only two images are accepted when ensuring consecutive slices via EquiDistantBlocksSorter.

◆ SetFixTiltByShearing()

void mitk::DICOMITKSeriesGDCMReader::SetFixTiltByShearing ( bool on )

Controls whether to "fix" tilted acquisitions by shearing the output (see Gantry tilt handling).

◆ SetSimpleVolumeReading()

void mitk::DICOMITKSeriesGDCMReader::SetSimpleVolumeReading ( bool read )

inline

Ignore all dicom tags that are non-essential for simple 3D volume import.

Definition at line 249 of file mitkDICOMITKSeriesGDCMReader.h.

◆ SetTagCache()

void mitk::DICOMITKSeriesGDCMReader::SetTagCache ( const DICOMTagCache::Pointer & )

overrideprotectedvirtual

A way to provide external knowledge about files and tag values is appreciated.

Implements mitk::DICOMFileReader.

◆ SetToleratedOriginOffset()

void mitk::DICOMITKSeriesGDCMReader::SetToleratedOriginOffset ( double millimeters = 0.005 ) const

See Forced Configuration.

◆ SetToleratedOriginOffsetToAdaptive()

void mitk::DICOMITKSeriesGDCMReader::SetToleratedOriginOffsetToAdaptive ( double fractionOfInterSliceDistanct = 0.3 ) const

See Forced Configuration.

Member Data Documentation

◆ ConstSorterList

const typedef std::list<DICOMDatasetSorter::ConstPointer> mitk::DICOMITKSeriesGDCMReader::ConstSorterList

Definition at line 220 of file mitkDICOMITKSeriesGDCMReader.h.

◆ m_DefaultDecimalPlacesForOrientation

const static int mitk::DICOMITKSeriesGDCMReader::m_DefaultDecimalPlacesForOrientation

staticprotected

Definition at line 303 of file mitkDICOMITKSeriesGDCMReader.h.

◆ m_DefaultFixTiltByShearing

const static bool mitk::DICOMITKSeriesGDCMReader::m_DefaultFixTiltByShearing

staticprotected

Definition at line 305 of file mitkDICOMITKSeriesGDCMReader.h.

◆ m_DefaultSimpleVolumeImport

const static bool mitk::DICOMITKSeriesGDCMReader::m_DefaultSimpleVolumeImport

staticprotected

Definition at line 304 of file mitkDICOMITKSeriesGDCMReader.h.

◆ m_EquiDistantBlocksSorter

mitk::EquiDistantBlocksSorter::Pointer mitk::DICOMITKSeriesGDCMReader::m_EquiDistantBlocksSorter

protected

Definition at line 359 of file mitkDICOMITKSeriesGDCMReader.h.

◆ m_FixTiltByShearing

bool mitk::DICOMITKSeriesGDCMReader::m_FixTiltByShearing

protected

Definition at line 345 of file mitkDICOMITKSeriesGDCMReader.h.

◆ m_NormalDirectionConsistencySorter

mitk::NormalDirectionConsistencySorter::Pointer mitk::DICOMITKSeriesGDCMReader::m_NormalDirectionConsistencySorter

protected

Definition at line 361 of file mitkDICOMITKSeriesGDCMReader.h.

◆ m_SimpleVolumeReading

bool mitk::DICOMITKSeriesGDCMReader::m_SimpleVolumeReading

protected

Definition at line 347 of file mitkDICOMITKSeriesGDCMReader.h.

The documentation for this class was generated from the following file:

mitkDICOMITKSeriesGDCMReader.h

Public Member Functions

Static Public Member Functions

Public Attributes

Protected Types

Protected Member Functions

Static Protected Member Functions

Protected Attributes

Static Protected Attributes

Additional Inherited Members

Detailed Description

Loading strategy

Forced Configuration

User Configuration

Gantry tilt handling

Testing

Class internals

Overview of related classes

Details about the tilt correction

Sub-classes can condense multiple blocks into a single larger block

Member Typedef Documentation

◆ SortingBlockList

◆ SortingBlockListItemType

Constructor & Destructor Documentation

◆ DICOMITKSeriesGDCMReader() [1/2]

◆ ~DICOMITKSeriesGDCMReader()

◆ DICOMITKSeriesGDCMReader() [2/2]

Member Function Documentation

◆ AddSortingElement()

◆ AnalyzeInputFiles()

◆ CanHandleFile()

◆ Condense3DBlocks()

◆ GetAcceptTwoSlicesGroups()

◆ GetActiveLocale()

◆ GetDecimalPlacesForOrientation()

◆ GetDefaultDecimalPlacesForOrientation()

◆ GetDefaultFixTiltByShearing()

◆ GetDefaultSimpleVolumeImport()

◆ GetFixTiltByShearing()

◆ GetFreelyConfiguredSortingElements()

◆ GetReaderImplementationLevel()

◆ GetSimpleVolumeReading()

◆ GetTagCache()

◆ GetTagsOfInterest()

◆ GetToleratedOriginError()

◆ InternalExecuteSortingStep()

◆ InternalPrintConfiguration()

◆ IsToleratedOriginOffsetAbsolute()

◆ LoadImages()

◆ LoadMitkImageForImageBlockDescriptor()

◆ LoadMitkImageForOutput()

◆ mitkClassMacro()

◆ mitkCloneMacro()

◆ mitkNewMacro1Param()

◆ mitkNewMacro2Param()

◆ New()

◆ operator=()

◆ operator==()

◆ PopLocale()

◆ PushLocale()

◆ SetAcceptTwoSlicesGroups()

◆ SetFixTiltByShearing()

◆ SetSimpleVolumeReading()

◆ SetTagCache()

◆ SetToleratedOriginOffset()

◆ SetToleratedOriginOffsetToAdaptive()

Member Data Documentation

◆ ConstSorterList

◆ m_DefaultDecimalPlacesForOrientation

◆ m_DefaultFixTiltByShearing

◆ m_DefaultSimpleVolumeImport

◆ m_EquiDistantBlocksSorter

◆ m_FixTiltByShearing

◆ m_NormalDirectionConsistencySorter

◆ m_SimpleVolumeReading