#include <mitkSurfaceInterpolationController.h>

Inheritance diagram for mitk::SurfaceInterpolationController:

Collaboration diagram for mitk::SurfaceInterpolationController:

Classes
struct	ContourPositionInformation

Public Types
typedef std::vector< ContourPositionInformation >	ContourPositionInformationList

typedef std::vector< ContourPositionInformationList >	ContourPositionInformationVec2D

typedef std::vector< ContourPositionInformationVec2D >	ContourPositionInformationVec3D

typedef std::map< mitk::Image *, ContourPositionInformationVec3D >	ContourListMap

typedef std::map< mitk::Image *, ContourPositionInformationVec2D >	ContourContainer

Public Member Functions
	mitkClassMacroItkParent (SurfaceInterpolationController, itk::Object)

Pointer	Clone () const

virtual double	GetDistanceImageSpacing ()

void	SetCurrentTimePoint (TimePointType tp)

TimePointType	GetCurrentTimePoint () const

void	AddNewContour (Surface::Pointer newContour)
	Adds a new extracted contour to the list. More...

void	AddNewContours (const std::vector< Surface::Pointer > &newContours, std::vector< const mitk::PlaneGeometry * > &contourPlanes, bool reinitializeAction=false)
	Adds new extracted contours to the list. If one or more contours at a given position already exist they will be updated respectively. More...

const mitk::Surface *	GetContour (const ContourPositionInformation &contourInfo)
	Returns the contour for a given plane for the current selected segmenation. More...

mitk::Point3D	ComputeInteriorPointOfContour (const ContourPositionInformation &contour, mitk::LabelSetImage *labelSetImage)
	Computes an interior point of the input contour. It's used to detect merge and erase operations. More...

void	AddLabelSetConnection ()
	Make the surface interpolator responsive to the segmentation image by subscribing to events from the image. More...

void	RemoveLabelSetConnection ()
	Make the surface interpolator responsive to the segmentation image by stopping subscription to events from the image. More...

void	RemoveLabelSetConnection (mitk::LabelSetImage *labelSetImage, unsigned int layerID)

void	ReinitializeInterpolation ()
	Resets the pipeline for interpolation. The various filters used are reset. More...

void	RemoveObservers ()

void	AddLabelSetConnection (unsigned int layerID)

void	UnsetSelectedImage ()

unsigned int	GetNumberOfLayersInCurrentSegmentation () const
	Returns the number of layers in the current segmentation image. More...

void	SetNumberOfLayersInCurrentSegmentation (unsigned int)
	Set the number of layers in the current segmentation image. More...

void	OnRemoveLayer ()
	Function that does the data management when a layer is removed. More...

void	OnAddLayer ()
	Function that does the data management when a layer is added. More...

unsigned int	GetNumberOfContours ()
	Returns the number of available contours for the current selected segmentation. More...

void	Interpolate ()
	Performs the interpolation. More...

mitk::Surface::Pointer	GetInterpolationResult ()
	Get the Result of the interpolation operation. More...

void	SetMinSpacing (double minSpacing)
	Sets the minimum spacing of the current selected segmentation This is needed since the contour points we reduced before they are used to interpolate the surface. More...

void	SetMaxSpacing (double maxSpacing)
	Sets the minimum spacing of the current selected segmentation This is needed since the contour points we reduced before they are used to interpolate the surface. More...

void	SetDistanceImageVolume (unsigned int distImageVolume)

mitk::Image::Pointer	GetCurrentSegmentation ()
	Get the current selected segmentation for which the interpolation is performed. More...

Surface *	GetContoursAsSurface ()

void	SetDataStorage (DataStorage::Pointer ds)

void	SetCurrentSegmentationInterpolationList (mitk::Image::Pointer segmentation)

void	SetCurrentInterpolationSession (mitk::Image::Pointer currentSegmentationImage)

void	RemoveSegmentationFromContourList (mitk::Image *segmentation)

void	RemoveInterpolationSession (mitk::Image::Pointer segmentationImage)
	Remove interpolation session. More...

bool	ReplaceInterpolationSession (mitk::Image::Pointer oldSession, mitk::Image::Pointer newSession)

void	RemoveAllInterpolationSessions ()
	Removes all sessions. More...

mitk::Image *	GetImage ()

ContourPositionInformationList &	GetContours (unsigned int timeStep, unsigned int layerID)
	Get the Contours at a certain timeStep and layerID. More...

void	CompleteReinitialization (const std::vector< mitk::Surface::Pointer > &contourList, std::vector< const mitk::PlaneGeometry * > &contourPlanes)
	Trigerred with the "Reinit Interpolation" action. The contours are used to repopulate the surfaceInterpolator data structures so that interpolation can be performed after reloading data. More...

void	RemoveContours (mitk::Label::PixelType label, unsigned int timeStep, unsigned int layerID)
	Removes contours of a particular label, at a given time step and layerID. More...

double	EstimatePortionOfNeededMemory ()

void	AddActiveLabelContoursForInterpolation (mitk::Label::PixelType activeLabel)

unsigned int	GetNumberOfInterpolationSessions ()

bool	RemoveContour (ContourPositionInformation contourInfo)
	Removes the contour for a given plane for the current selected segmenation. More...

mitk::DataNode *	GetSegmentationImageNode ()
	Get the Segmentation Image Node object. More...

Static Public Member Functions
static Pointer	New ()

static SurfaceInterpolationController *	GetInstance ()

Protected Member Functions
	SurfaceInterpolationController ()

	~SurfaceInterpolationController () override

template<typename TPixel , unsigned int VImageDimension>
void	GetImageBase (itk::Image< TPixel, VImageDimension > *input, itk::ImageBase< 3 >::Pointer &result)

Detailed Description

Definition at line 30 of file mitkSurfaceInterpolationController.h.

Member Typedef Documentation

◆ ContourContainer

typedef std::map<mitk::Image *, ContourPositionInformationVec2D> mitk::SurfaceInterpolationController::ContourContainer

Definition at line 68 of file mitkSurfaceInterpolationController.h.

◆ ContourListMap

typedef std::map<mitk::Image *, ContourPositionInformationVec3D> mitk::SurfaceInterpolationController::ContourListMap

Definition at line 67 of file mitkSurfaceInterpolationController.h.

◆ ContourPositionInformationList

typedef std::vector<ContourPositionInformation> mitk::SurfaceInterpolationController::ContourPositionInformationList

Definition at line 61 of file mitkSurfaceInterpolationController.h.

◆ ContourPositionInformationVec2D

typedef std::vector<ContourPositionInformationList> mitk::SurfaceInterpolationController::ContourPositionInformationVec2D

Definition at line 62 of file mitkSurfaceInterpolationController.h.

◆ ContourPositionInformationVec3D

typedef std::vector<ContourPositionInformationVec2D> mitk::SurfaceInterpolationController::ContourPositionInformationVec3D

Definition at line 65 of file mitkSurfaceInterpolationController.h.

Constructor & Destructor Documentation

◆ SurfaceInterpolationController()

mitk::SurfaceInterpolationController::SurfaceInterpolationController ( )

protected

◆ ~SurfaceInterpolationController()

mitk::SurfaceInterpolationController::~SurfaceInterpolationController ( )

overrideprotected

Member Function Documentation

◆ AddActiveLabelContoursForInterpolation()

void mitk::SurfaceInterpolationController::AddActiveLabelContoursForInterpolation ( mitk::Label::PixelType activeLabel )

Adds Contours from the active Label to the interpolation pipeline

◆ AddLabelSetConnection() [1/2]

void mitk::SurfaceInterpolationController::AddLabelSetConnection ( )

Make the surface interpolator responsive to the segmentation image by subscribing to events from the image.

◆ AddLabelSetConnection() [2/2]

void mitk::SurfaceInterpolationController::AddLabelSetConnection ( unsigned int layerID )

◆ AddNewContour()

void mitk::SurfaceInterpolationController::AddNewContour ( Surface::Pointer newContour )

Adds a new extracted contour to the list.

Parameters

newContour the contour to be added. If a contour at that position already exists the related contour will be updated

◆ AddNewContours()

void mitk::SurfaceInterpolationController::AddNewContours	(	const std::vector< Surface::Pointer > &	newContours,
		std::vector< const mitk::PlaneGeometry * > &	contourPlanes,
		bool	reinitializeAction = `false`
	)

Adds new extracted contours to the list. If one or more contours at a given position already exist they will be updated respectively.

Parameters

newContours the list of the contours

◆ Clone()

Pointer mitk::SurfaceInterpolationController::Clone ( ) const

◆ CompleteReinitialization()

void mitk::SurfaceInterpolationController::CompleteReinitialization	(	const std::vector< mitk::Surface::Pointer > &	contourList,
		std::vector< const mitk::PlaneGeometry * > &	contourPlanes
	)

Trigerred with the "Reinit Interpolation" action. The contours are used to repopulate the surfaceInterpolator data structures so that interpolation can be performed after reloading data.

Parameters

contourList	List of contours extracted
contourPlanes	List of planes at which the contours were extracted

◆ ComputeInteriorPointOfContour()

mitk::Point3D mitk::SurfaceInterpolationController::ComputeInteriorPointOfContour	(	const ContourPositionInformation &	contour,
		mitk::LabelSetImage *	labelSetImage
	)

Computes an interior point of the input contour. It's used to detect merge and erase operations.

Parameters

contour	Contour for which to compute the contour
labelSetImage	LabelSetImage used input to check contour Label.

Returns: mitk::Point3D 3D Interior point of the contour returned.

◆ EstimatePortionOfNeededMemory()

double mitk::SurfaceInterpolationController::EstimatePortionOfNeededMemory ( )

Estimates the memory which is needed to build up the equationsystem for the interpolation.

Returns: The percentage of the real memory which will be used by the interpolation

◆ GetContour()

const mitk::Surface* mitk::SurfaceInterpolationController::GetContour ( const ContourPositionInformation & contourInfo )

Returns the contour for a given plane for the current selected segmenation.

Parameters

contourInfo the contour which should be returned

Returns: the contour as an mitk::Surface. If no contour is available at the give position nullptr is returned

◆ GetContours()

ContourPositionInformationList& mitk::SurfaceInterpolationController::GetContours	(	unsigned int	timeStep,
		unsigned int	layerID
	)

Get the Contours at a certain timeStep and layerID.

Parameters

timeStep	Time Step from which to get the contours.
layerID	Layer from which to get the contours.

Returns: std::vector<ContourPositionInformation> Returns contours.

◆ GetContoursAsSurface()

Surface* mitk::SurfaceInterpolationController::GetContoursAsSurface ( )

◆ GetCurrentSegmentation()

mitk::Image::Pointer mitk::SurfaceInterpolationController::GetCurrentSegmentation ( )

Get the current selected segmentation for which the interpolation is performed.

Returns: the current segmentation image

◆ GetCurrentTimePoint()

TimePointType mitk::SurfaceInterpolationController::GetCurrentTimePoint ( ) const

inline

Definition at line 85 of file mitkSurfaceInterpolationController.h.

◆ GetDistanceImageSpacing()

virtual double mitk::SurfaceInterpolationController::GetDistanceImageSpacing ( )

virtual

◆ GetImage()

mitk::Image* mitk::SurfaceInterpolationController::GetImage ( )

◆ GetImageBase()

template<typename TPixel , unsigned int VImageDimension>

void mitk::SurfaceInterpolationController::GetImageBase	(	itk::Image< TPixel, VImageDimension > *	input,
		itk::ImageBase< 3 >::Pointer &	result
	)

protected

◆ GetInstance()

static SurfaceInterpolationController* mitk::SurfaceInterpolationController::GetInstance ( )

static

◆ GetInterpolationResult()

mitk::Surface::Pointer mitk::SurfaceInterpolationController::GetInterpolationResult ( )

Get the Result of the interpolation operation.

Returns: mitk::Surface::Pointer

◆ GetNumberOfContours()

unsigned int mitk::SurfaceInterpolationController::GetNumberOfContours ( )

Returns the number of available contours for the current selected segmentation.

Returns: the number of contours

◆ GetNumberOfInterpolationSessions()

unsigned int mitk::SurfaceInterpolationController::GetNumberOfInterpolationSessions ( )

◆ GetNumberOfLayersInCurrentSegmentation()

unsigned int mitk::SurfaceInterpolationController::GetNumberOfLayersInCurrentSegmentation ( ) const

Returns the number of layers in the current segmentation image.

◆ GetSegmentationImageNode()

mitk::DataNode* mitk::SurfaceInterpolationController::GetSegmentationImageNode ( )

Get the Segmentation Image Node object.

Returns: DataNode* returns the DataNode containing the segmentation image.

◆ Interpolate()

void mitk::SurfaceInterpolationController::Interpolate ( )

Performs the interpolation.

◆ mitkClassMacroItkParent()

mitk::SurfaceInterpolationController::mitkClassMacroItkParent	(	SurfaceInterpolationController	,
		itk::Object
	)

◆ New()

static Pointer mitk::SurfaceInterpolationController::New ( )

static

◆ OnAddLayer()

void mitk::SurfaceInterpolationController::OnAddLayer ( )

Function that does the data management when a layer is added.

◆ OnRemoveLayer()

void mitk::SurfaceInterpolationController::OnRemoveLayer ( )

Function that does the data management when a layer is removed.

◆ ReinitializeInterpolation()

void mitk::SurfaceInterpolationController::ReinitializeInterpolation ( )

Resets the pipeline for interpolation. The various filters used are reset.

◆ RemoveAllInterpolationSessions()

void mitk::SurfaceInterpolationController::RemoveAllInterpolationSessions ( )

Removes all sessions.

◆ RemoveContour()

bool mitk::SurfaceInterpolationController::RemoveContour ( ContourPositionInformation contourInfo )

Removes the contour for a given plane for the current selected segmenation.

Parameters

contourInfo the contour which should be removed

Returns: true if a contour was found and removed, false if no contour was found

◆ RemoveContours()

void mitk::SurfaceInterpolationController::RemoveContours	(	mitk::Label::PixelType	label,
		unsigned int	timeStep,
		unsigned int	layerID
	)

Removes contours of a particular label, at a given time step and layerID.

Parameters

label	Label of contour to remove.
timeStep	Time step in which to remove the contours.
layerID	Layer in which the contour should be removed.

◆ RemoveInterpolationSession()

void mitk::SurfaceInterpolationController::RemoveInterpolationSession ( mitk::Image::Pointer segmentationImage )

Remove interpolation session.

Parameters

segmentationImage the session to be removed

◆ RemoveLabelSetConnection() [1/2]

void mitk::SurfaceInterpolationController::RemoveLabelSetConnection ( )

Make the surface interpolator responsive to the segmentation image by stopping subscription to events from the image.

◆ RemoveLabelSetConnection() [2/2]

void mitk::SurfaceInterpolationController::RemoveLabelSetConnection	(	mitk::LabelSetImage *	labelSetImage,
		unsigned int	layerID
	)

◆ RemoveObservers()

void mitk::SurfaceInterpolationController::RemoveObservers ( )

◆ RemoveSegmentationFromContourList()

void mitk::SurfaceInterpolationController::RemoveSegmentationFromContourList ( mitk::Image * segmentation )

Removes the segmentation and all its contours from the list

Parameters

segmentation The segmentation to be removed

Deprecated:: (as of 2014_03)

◆ ReplaceInterpolationSession()

bool mitk::SurfaceInterpolationController::ReplaceInterpolationSession	(	mitk::Image::Pointer	oldSession,
		mitk::Image::Pointer	newSession
	)

Replaces the current interpolation session with a new one. All contours form the old session will be applied to the new session. This only works if the two images have the geometry

Parameters

oldSession	the session which should be replaced
newSession	the new session which replaces the old one

Returns: true it the the replacement was successful, false if not (e.g. the image's geometry differs)

◆ SetCurrentInterpolationSession()

void mitk::SurfaceInterpolationController::SetCurrentInterpolationSession ( mitk::Image::Pointer currentSegmentationImage )

Sets the current list of contourpoints which is used for the surface interpolation

Parameters

currentSegmentationImage The current selected segmentation

◆ SetCurrentSegmentationInterpolationList()

void mitk::SurfaceInterpolationController::SetCurrentSegmentationInterpolationList ( mitk::Image::Pointer segmentation )

Sets the current list of contourpoints which is used for the surface interpolation

Parameters

segmentation The current selected segmentation

Deprecated:: (as of 2014_03)

◆ SetCurrentTimePoint()

void mitk::SurfaceInterpolationController::SetCurrentTimePoint ( TimePointType tp )

inline

Definition at line 72 of file mitkSurfaceInterpolationController.h.

◆ SetDataStorage()

void mitk::SurfaceInterpolationController::SetDataStorage ( DataStorage::Pointer ds )

◆ SetDistanceImageVolume()

void mitk::SurfaceInterpolationController::SetDistanceImageVolume ( unsigned int distImageVolume )

Sets the volume i.e. the number of pixels that the distance image should have By evaluation we found out that 50.000 pixel delivers a good result

◆ SetMaxSpacing()

void mitk::SurfaceInterpolationController::SetMaxSpacing ( double maxSpacing )

Sets the minimum spacing of the current selected segmentation This is needed since the contour points we reduced before they are used to interpolate the surface.

Parameters

maxSpacing Set the max Spacing for interpolation

◆ SetMinSpacing()

void mitk::SurfaceInterpolationController::SetMinSpacing ( double minSpacing )

Sets the minimum spacing of the current selected segmentation This is needed since the contour points we reduced before they are used to interpolate the surface.

Parameters

minSpacing Paramter to set

◆ SetNumberOfLayersInCurrentSegmentation()

void mitk::SurfaceInterpolationController::SetNumberOfLayersInCurrentSegmentation ( unsigned int )

Set the number of layers in the current segmentation image.

◆ UnsetSelectedImage()

void mitk::SurfaceInterpolationController::UnsetSelectedImage ( )

inline

Definition at line 143 of file mitkSurfaceInterpolationController.h.

The documentation for this class was generated from the following file:

mitkSurfaceInterpolationController.h

Classes

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Detailed Description

Member Typedef Documentation

◆ ContourContainer

◆ ContourListMap

◆ ContourPositionInformationList

◆ ContourPositionInformationVec2D

◆ ContourPositionInformationVec3D

Constructor & Destructor Documentation

◆ SurfaceInterpolationController()

◆ ~SurfaceInterpolationController()

Member Function Documentation

◆ AddActiveLabelContoursForInterpolation()

◆ AddLabelSetConnection() [1/2]

◆ AddLabelSetConnection() [2/2]

◆ AddNewContour()

◆ AddNewContours()

◆ Clone()

◆ CompleteReinitialization()

◆ ComputeInteriorPointOfContour()

◆ EstimatePortionOfNeededMemory()

◆ GetContour()

◆ GetContours()

◆ GetContoursAsSurface()

◆ GetCurrentSegmentation()

◆ GetCurrentTimePoint()

◆ GetDistanceImageSpacing()

◆ GetImage()

◆ GetImageBase()

◆ GetInstance()

◆ GetInterpolationResult()

◆ GetNumberOfContours()

◆ GetNumberOfInterpolationSessions()

◆ GetNumberOfLayersInCurrentSegmentation()

◆ GetSegmentationImageNode()

◆ Interpolate()

◆ mitkClassMacroItkParent()

◆ New()

◆ OnAddLayer()

◆ OnRemoveLayer()

◆ ReinitializeInterpolation()

◆ RemoveAllInterpolationSessions()

◆ RemoveContour()

◆ RemoveContours()

◆ RemoveInterpolationSession()

◆ RemoveLabelSetConnection() [1/2]

◆ RemoveLabelSetConnection() [2/2]

◆ RemoveObservers()

◆ RemoveSegmentationFromContourList()

◆ ReplaceInterpolationSession()

◆ SetCurrentInterpolationSession()

◆ SetCurrentSegmentationInterpolationList()

◆ SetCurrentTimePoint()

◆ SetDataStorage()

◆ SetDistanceImageVolume()

◆ SetMaxSpacing()

◆ SetMinSpacing()

◆ SetNumberOfLayersInCurrentSegmentation()

◆ UnsetSelectedImage()