Extracts a single region from a segmentation image and creates a new image with same geometry of the input image. More...

#include <mitkPickingTool.h>

Inheritance diagram for mitk::PickingTool:

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Collaboration diagram for mitk::PickingTool:

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Public Member Functions
	mitkClassMacro (PickingTool, SegWithPreviewTool)

Pointer	Clone () const

const char **	GetXPM () const override
	Returns an icon in the XPM format. More...

const char *	GetName () const override
	Returns the name of this tool. Make it short! More...

us::ModuleResource	GetIconResource () const override
	Returns the tool button icon of the tool wrapped by a usModuleResource. More...

void	Activated () override
	Called when the tool gets activated. More...

void	Deactivated () override
	Called when the tool gets deactivated. More...

void	ClearPicks ()

bool	HasPicks () const

Public Member Functions inherited from mitk::SegWithPreviewTool
	mitkClassMacro (SegWithPreviewTool, Tool)

void	Activated () override
	Called when the tool gets activated. More...

void	Deactivated () override
	Called when the tool gets deactivated. More...

void	ConfirmSegmentation ()

virtual void	SetCreateAllTimeSteps (bool _arg)

virtual bool	GetCreateAllTimeSteps ()

virtual void	CreateAllTimeStepsOn ()

virtual void	CreateAllTimeStepsOff ()

virtual void	SetKeepActiveAfterAccept (bool _arg)

virtual bool	GetKeepActiveAfterAccept ()

virtual void	KeepActiveAfterAcceptOn ()

virtual void	KeepActiveAfterAcceptOff ()

virtual void	SetIsTimePointChangeAware (bool _arg)

virtual bool	GetIsTimePointChangeAware ()

virtual void	IsTimePointChangeAwareOn ()

virtual void	IsTimePointChangeAwareOff ()

virtual void	SetResetsToEmptyPreview (bool _arg)

virtual bool	GetResetsToEmptyPreview ()

virtual void	ResetsToEmptyPreviewOn ()

virtual void	ResetsToEmptyPreviewOff ()

virtual void	SetUseSpecialPreviewColor (bool _arg)

virtual bool	GetUseSpecialPreviewColor ()

virtual void	UseSpecialPreviewColorOn ()

virtual void	UseSpecialPreviewColorOff ()

virtual void	SetRequestDeactivationConfirmation (bool _arg)

virtual bool	GetRequestDeactivationConfirmation ()

virtual void	RequestDeactivationConfirmationOn ()

virtual void	RequestDeactivationConfirmationOff ()

void	SetMergeStyle (MultiLabelSegmentation::MergeStyle mergeStyle)

virtual MultiLabelSegmentation::MergeStyle	GetMergeStyle ()

void	SetOverwriteStyle (MultiLabelSegmentation::OverwriteStyle overwriteStyle)

virtual MultiLabelSegmentation::OverwriteStyle	GetOverwriteStyle ()

void	SetLabelTransferScope (LabelTransferScope labelTransferScope)

virtual LabelTransferScope	GetLabelTransferScope ()

void	SetSelectedLabels (const SelectedLabelVectorType &labelsToTransfer)

virtual SelectedLabelVectorType	GetSelectedLabels ()

void	SetLabelTransferMode (LabelTransferMode labelTransferMode)

virtual LabelTransferMode	GetLabelTransferMode ()

bool	CanHandle (const BaseData referenceData, const BaseData workingData) const override

void	UpdatePreview (bool ignoreLazyPreviewSetting=false)

bool	IsUpdating () const

std::string	GetCurrentSegmentationName ()
	Gets the name of the currently selected segmentation node. More...

virtual DataNode *	GetTargetSegmentationNode () const
	Returns the currently selected segmentation node. More...

LabelSetImage *	GetTargetSegmentation () const

LabelSetImage *	GetPreviewSegmentation ()

const LabelSetImage *	GetPreviewSegmentation () const

DataNode *	GetPreviewSegmentationNode ()

Public Member Functions inherited from mitk::Tool
	mitkClassMacro (Tool, EventStateMachine)

virtual std::string	GetIconPath () const
	Returns the path of an icon. More...

virtual us::ModuleResource	GetCursorIconResource () const
	Returns the path of a cursor icon. More...

virtual void	InitializeStateMachine ()

virtual itk::Object::Pointer	GetGUI (const std::string &toolkitPrefix, const std::string &toolkitPostfix)
	Interface for GUI creation. More...

virtual NodePredicateBase::ConstPointer	GetReferenceDataPreference () const

virtual NodePredicateBase::ConstPointer	GetWorkingDataPreference () const

DataNode::Pointer	CreateEmptySegmentationNode (const Image *original, const std::string &organName, const mitk::Color &color) const

DataNode::Pointer	CreateSegmentationNode (Image *image, const std::string &organName, const mitk::Color &color) const

Public Member Functions inherited from mitk::EventStateMachine
virtual std::vector< std::string >	GetClassHierarchy () const override

virtual const char *	GetClassName () const

bool	LoadStateMachine (const std::string &filename, const us::Module *module=nullptr)
	Loads XML resource. More...

bool	HandleEvent (InteractionEvent event, DataNode dataNode)

void	EnableUndo (bool enable)
	Enables or disabled Undo. More...

void	EnableInteraction (bool enable)
	Enables/disables the state machine. In un-enabled state it won't react to any events. More...

Public Member Functions inherited from mitk::InteractionEventHandler
bool	SetEventConfig (const std::string &filename, const us::Module *module=nullptr)
	Loads a configuration from an XML resource. More...

bool	SetEventConfig (const EventConfig &config)
	Loads a configuration from an EventConfig object. More...

EventConfig	GetEventConfig () const
	Returns the current configuration. More...

bool	AddEventConfig (const std::string &filename, const us::Module *module=nullptr)
	This method extends the configuration. More...

bool	AddEventConfig (const EventConfig &config)
	This method extends the configuration. The configuration from the EventConfig object is loaded and only the ones conflicting are replaced by the new one. This way several configurations can be combined. More...

Public Member Functions inherited from mitk::InteractionEventObserver
	InteractionEventObserver ()

virtual	~InteractionEventObserver ()

void	Disable ()

void	Enable ()

bool	IsEnabled () const

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from mitk::EventStateMachine
static const char *	GetStaticNameOfClass ()

Static Public Member Functions inherited from mitk::InteractionEventHandler
static const char *	GetStaticNameOfClass ()

Protected Member Functions
	PickingTool ()

	~PickingTool () override

void	ConnectActionsAndFunctions () override

virtual void	OnAddPoint (StateMachineAction , InteractionEvent interactionEvent)
	Add point action of StateMachine pattern. More...

virtual void	OnDelete (StateMachineAction , InteractionEvent interactionEvent)
	Delete action of StateMachine pattern. More...

void	ClearSeeds ()
	Clear all seed points. More...

void	DoUpdatePreview (const Image inputAtTimeStep, const Image oldSegAtTimeStep, LabelSetImage *previewImage, TimeStepType timeStep) override

Protected Member Functions inherited from mitk::SegWithPreviewTool
	SegWithPreviewTool (bool lazyDynamicPreviews=false)

	SegWithPreviewTool (bool lazyDynamicPreviews, const char interactorType, const us::Module interactorModule=nullptr)

	~SegWithPreviewTool () override

const char *	GetGroup () const override
	Name of a group. More...

void	EnsureTargetSegmentationNodeInDataStorage () const

virtual void	InitiateToolByInput ()

virtual void	UpdatePrepare ()

virtual void	UpdateCleanUp ()

virtual void	ConfirmCleanUp ()

virtual void	PreparePreviewToResultTransfer (const LabelMappingType &labelMapping)

const Image *	GetSegmentationInput () const

const Image *	GetReferenceData () const

void	ResetPreviewNode ()

void	ResetPreviewContent ()

void	ResetPreviewContentAtTimeStep (unsigned int timeStep)

TimePointType	GetLastTimePointOfUpdate () const

LabelSetImage::LabelValueType	GetActiveLabelValueOfPreview () const

virtual Label::PixelType	GetUserDefinedActiveLabel () const

virtual void	SetWorkingPlaneGeometry (PlaneGeometry *_arg)

virtual const PlaneGeometry *	GetWorkingPlaneGeometry ()

bool	ConfirmBeforeDeactivation () override
	Method call to invoke a dialog box just before exiting. The method can be reimplemented in the respective tool class with business logic on when there should be a confirmation dialog from the user before the tool exits. More...

Protected Member Functions inherited from mitk::Tool
virtual void	SetToolManager (ToolManager *)

ToolManager *	GetToolManager () const

mitk::DataStorage *	GetDataStorage () const

void	ConnectActionsAndFunctions () override

	Tool (const char , const us::Module interactorModule=nullptr)

	~Tool () override

void	Notify (InteractionEvent *interactionEvent, bool isHandled) override

bool	FilterEvents (InteractionEvent , DataNode ) override

Protected Member Functions inherited from mitk::EventStateMachine
	EventStateMachine ()

	~EventStateMachine () override

void	AddActionFunction (const std::string &action, TActionFunctor *functor)

void	AddActionFunction (const std::string &action, const ActionFunctionDelegate &delegate)

void	AddConditionFunction (const std::string &condition, const ConditionFunctionDelegate &delegate)

StateMachineState *	GetCurrentState () const

void	ResetToStartState ()
	ResetToStartState Reset state machine to it initial starting state. More...

virtual bool	CheckCondition (const StateMachineCondition &condition, const InteractionEvent *interactionEvent)

virtual void	ExecuteAction (StateMachineAction action, InteractionEvent interactionEvent)

void	SetMouseCursor (const char *xpm[], int hotspotX, int hotspotY)
	Sets the specified mouse cursor. More...

void	ResetMouseCursor ()
	Resets the mouse cursor to its original state. More...

StateMachineTransition *	GetExecutableTransition (InteractionEvent *event)
	Returns the executable transition for the given event. More...

Protected Member Functions inherited from mitk::InteractionEventHandler
	InteractionEventHandler ()

	~InteractionEventHandler () override

PropertyList::Pointer	GetAttributes () const

std::string	MapToEventVariant (InteractionEvent *interactionEvent)

virtual void	ConfigurationChanged ()

Protected Attributes
PointSet::Pointer	m_PointSet

DataNode::Pointer	m_PointSetNode

Protected Attributes inherited from mitk::SegWithPreviewTool
ToolCommand::Pointer	m_ProgressCommand

Protected Attributes inherited from mitk::Tool
std::string	m_EventConfig
	Let subclasses change their event configuration. More...

Protected Attributes inherited from mitk::EventStateMachine
bool	m_IsActive

UndoController *	m_UndoController

bool	m_UndoEnabled

Additional Inherited Members
Public Types inherited from mitk::SegWithPreviewTool
enum	LabelTransferScope { LabelTransferScope::ActiveLabel, LabelTransferScope::SelectedLabels, LabelTransferScope::AllLabels }

enum	LabelTransferMode { LabelTransferMode::MapLabel, LabelTransferMode::AddLabel }

using	SelectedLabelVectorType = std::vector< Label::PixelType >

Public Types inherited from mitk::Tool
typedef mitk::Label::PixelType	DefaultSegmentationDataType

Public Types inherited from mitk::EventStateMachine
typedef EventStateMachine	Self

typedef InteractionEventHandler	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

typedef std::map< std::string, TActionFunctor * >	ActionFunctionsMapType

typedef itk::SmartPointer< StateMachineState >	StateMachineStateType

Public Types inherited from mitk::InteractionEventHandler
typedef InteractionEventHandler	Self

typedef itk::Object	Superclass

typedef itk::SmartPointer< Self >	Pointer

typedef itk::SmartPointer< const Self >	ConstPointer

Public Attributes inherited from mitk::Tool
Message	GUIProcessEventsMessage
	To let GUI process new events (e.g. qApp->processEvents() ) More...

Message1< std::string >	ErrorMessage
	To send error messages (to be shown by some GUI) More...

Message1< bool >	CurrentlyBusy
	To send whether the tool is busy (to be shown by some GUI) More...

Message1< std::string >	GeneralMessage
	To send general messages (to be shown by some GUI) More...

Protected Types inherited from mitk::SegWithPreviewTool
using	LabelMappingType = std::vector< std::pair< Label::PixelType, Label::PixelType > >

Protected Types inherited from mitk::EventStateMachine
typedef MessageAbstractDelegate2< StateMachineAction , InteractionEvent , void >	ActionFunctionDelegate

typedef MessageAbstractDelegate1< const InteractionEvent *, bool >	ConditionFunctionDelegate

Static Protected Member Functions inherited from mitk::SegWithPreviewTool
static Image::ConstPointer	GetImageByTimeStep (const Image *image, TimeStepType timestep)

static Image::Pointer	GetImageByTimeStep (Image *image, TimeStepType timestep)

static Image::ConstPointer	GetImageByTimePoint (const Image *image, TimePointType timePoint)

static void	TransferLabelInformation (const LabelMappingType &labelMapping, const mitk::LabelSetImage source, mitk::LabelSetImage target)

static void	TransferLabelSetImageContent (const LabelSetImage source, LabelSetImage target, TimeStepType timeStep)

Detailed Description

Extracts a single region from a segmentation image and creates a new image with same geometry of the input image.

The region is extracted in 3D space. This is done by performing region growing within the desired region. Use shift click to add the seed point.

See also: mitk::Tool; QmitkInteractiveSegmentation

Definition at line 40 of file mitkPickingTool.h.

Constructor & Destructor Documentation

◆ PickingTool()

mitk::PickingTool::PickingTool ( )

protected

◆ ~PickingTool()

mitk::PickingTool::~PickingTool ( )

overrideprotected

Member Function Documentation

◆ Activated()

void mitk::PickingTool::Activated ( )

overridevirtual

Called when the tool gets activated.

Derived tools should call their parents implementation at the beginning of the overriding function.

Reimplemented from mitk::Tool.

◆ ClearPicks()

void mitk::PickingTool::ClearPicks ( )

Clears all picks and updates the preview.

◆ ClearSeeds()

void mitk::PickingTool::ClearSeeds ( )

protected

Clear all seed points.

◆ Clone()

Pointer mitk::PickingTool::Clone ( ) const

◆ ConnectActionsAndFunctions()

void mitk::PickingTool::ConnectActionsAndFunctions ( )

overrideprotectedvirtual

Is called after loading a statemachine. Overwrite this function in specific interactor implementations. Connect actions and functions using the CONNECT_FUNCTION macro within this function.

Reimplemented from mitk::EventStateMachine.

◆ Deactivated()

void mitk::PickingTool::Deactivated ( )

overridevirtual

Called when the tool gets deactivated.

Derived tools should call their parents implementation at the end of the overriding function.

Reimplemented from mitk::Tool.

◆ DoUpdatePreview()

void mitk::PickingTool::DoUpdatePreview	(	const Image *	inputAtTimeStep,
		const Image *	oldSegAtTimeStep,
		LabelSetImage *	previewImage,
		TimeStepType	timeStep
	)

overrideprotectedvirtual

This function does the real work. Here the preview for a given input image should be computed and stored in the also passed preview image at the passed time step. It also provides the current/old segmentation at the time point, which can be used, if the preview depends on the the segmenation so far.

Implements mitk::SegWithPreviewTool.

◆ GetIconResource()

us::ModuleResource mitk::PickingTool::GetIconResource ( ) const

overridevirtual

Returns the tool button icon of the tool wrapped by a usModuleResource.

Returns: a valid ModuleResource or an invalid if this function is not reimplemented

Reimplemented from mitk::Tool.

◆ GetName()

const char* mitk::PickingTool::GetName ( ) const

overridevirtual

Returns the name of this tool. Make it short!

This name has to fit into some kind of button in most applications, so take some time to think of a good name!

Implements mitk::Tool.

◆ GetXPM()

const char** mitk::PickingTool::GetXPM ( ) const

overridevirtual

Returns an icon in the XPM format.

This icon has to fit into some kind of button in most applications, so make it smaller than 25x25 pixels.

XPM is e.g. supported by The Gimp. But if you open any XPM file in your text editor, you will see that you could also "draw" it with an editor.

Implements mitk::Tool.

◆ HasPicks()

bool mitk::PickingTool::HasPicks ( ) const

◆ mitkClassMacro()

mitk::PickingTool::mitkClassMacro	(	PickingTool	,
		SegWithPreviewTool
	)

◆ New()

static Pointer mitk::PickingTool::New ( )

static

◆ OnAddPoint()

virtual void mitk::PickingTool::OnAddPoint	(	StateMachineAction *	,
		InteractionEvent *	interactionEvent
	)

protectedvirtual

Add point action of StateMachine pattern.

◆ OnDelete()

virtual void mitk::PickingTool::OnDelete	(	StateMachineAction *	,
		InteractionEvent *	interactionEvent
	)

protectedvirtual

Delete action of StateMachine pattern.

Member Data Documentation

◆ m_PointSet

PointSet::Pointer mitk::PickingTool::m_PointSet

protected

Definition at line 77 of file mitkPickingTool.h.

◆ m_PointSetNode

DataNode::Pointer mitk::PickingTool::m_PointSetNode

protected

Definition at line 78 of file mitkPickingTool.h.

The documentation for this class was generated from the following file:

mitkPickingTool.h

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ PickingTool()

◆ ~PickingTool()

Member Function Documentation

◆ Activated()

◆ ClearPicks()

◆ ClearSeeds()

◆ Clone()

◆ ConnectActionsAndFunctions()

◆ Deactivated()

◆ DoUpdatePreview()

◆ GetIconResource()

◆ GetName()

◆ GetXPM()

◆ HasPicks()

◆ mitkClassMacro()

◆ New()

◆ OnAddPoint()

◆ OnDelete()

Member Data Documentation

◆ m_PointSet

◆ m_PointSetNode