Medical Imaging Interaction Toolkit  2018.4.99-936b789b
Medical Imaging Interaction Toolkit
mitk::IntensityQuantifier Class Reference

#include <mitkIntensityQuantifier.h>

Inheritance diagram for mitk::IntensityQuantifier:
Collaboration diagram for mitk::IntensityQuantifier:

Public Member Functions

 mitkClassMacro (IntensityQuantifier, BaseData)
 
Pointer Clone () const
 
 IntensityQuantifier ()
 
void InitializeByMinimumMaximum (double minimum, double maximum, unsigned int bins)
 
void InitializeByBinsizeAndBins (double minimum, unsigned int bins, double binsize)
 
void InitializeByBinsizeAndMaximum (double minimum, double maximum, double binsize)
 
void InitializeByImage (const Image *image, unsigned int bins)
 
void InitializeByImageAndMaximum (const Image *image, double maximum, unsigned int bins)
 
void InitializeByImageAndMinimum (const Image *image, double minimum, unsigned int bins)
 
void InitializeByImageRegion (const Image *image, const Image *mask, unsigned int bins)
 
void InitializeByImageRegionAndMinimum (const Image *image, const Image *mask, double minimum, unsigned int bins)
 
void InitializeByImageRegionAndMaximum (const Image *image, const Image *mask, double maximum, unsigned int bins)
 
void InitializeByImageAndBinsize (const Image *image, double binsize)
 
void InitializeByImageAndBinsizeAndMinimum (const Image *image, double minimum, double binsize)
 
void InitializeByImageAndBinsizeAndMaximum (const Image *image, double maximum, double binsize)
 
void InitializeByImageRegionAndBinsize (const Image *image, const Image *mask, double binsize)
 
void InitializeByImageRegionAndBinsizeAndMinimum (const Image *image, const Image *mask, double minimum, double binsize)
 
void InitializeByImageRegionAndBinsizeAndMaximum (const Image *image, const Image *mask, double maximum, double binsize)
 
unsigned int IntensityToIndex (double intensity)
 
double IndexToMinimumIntensity (unsigned int index)
 
double IndexToMeanIntensity (unsigned int index)
 
double IndexToMaximumIntensity (unsigned int index)
 
virtual bool GetInitialized () const
 
virtual unsigned int GetBins () const
 
virtual double GetBinsize () const
 
virtual double GetMinimum () const
 
virtual double GetMaximum () const
 
void SetRequestedRegionToLargestPossibleRegion () override
 Set the RequestedRegion to the LargestPossibleRegion. More...
 
bool RequestedRegionIsOutsideOfTheBufferedRegion () override
 Determine whether the RequestedRegion is outside of the BufferedRegion. More...
 
bool VerifyRequestedRegion () override
 Verify that the RequestedRegion is within the LargestPossibleRegion. More...
 
void SetRequestedRegion (const itk::DataObject *) override
 Set the requested region from this data object to match the requested region of the data object passed in as a parameter. More...
 
bool IsEmpty () const override
 Check whether object contains data (at least at one point in time), e.g., a set of points may be empty. More...
 
- Public Member Functions inherited from mitk::BaseData
virtual std::vector< std::string > GetClassHierarchy () const
 
virtual const char * GetClassName () const
 
BaseProperty::ConstPointer GetConstProperty (const std::string &propertyKey, const std::string &contextName="", bool fallBackOnDefaultContext=true) const override
 Get property by its key. More...
 
std::vector< std::string > GetPropertyKeys (const std::string &contextName="", bool includeDefaultContext=false) const override
 Query keys of existing properties. More...
 
std::vector< std::string > GetPropertyContextNames () const override
 Query names of existing contexts. More...
 
BasePropertyGetNonConstProperty (const std::string &propertyKey, const std::string &contextName="", bool fallBackOnDefaultContext=true) override
 Get property by its key. More...
 
void SetProperty (const std::string &propertyKey, BaseProperty *property, const std::string &contextName="", bool fallBackOnDefaultContext=false) override
 Add new or change existent property. More...
 
void RemoveProperty (const std::string &propertyKey, const std::string &contextName="", bool fallBackOnDefaultContext=false) override
 Removes a property. If the property does not exist, nothing will be done. More...
 
const mitk::TimeGeometryGetTimeGeometry () const
 Return the TimeGeometry of the data as const pointer. More...
 
const mitk::TimeGeometryGetTimeSlicedGeometry () const
 Return the TimeGeometry of the data as const pointer. More...
 
mitk::TimeGeometryGetTimeGeometry ()
 Return the TimeGeometry of the data as pointer. More...
 
const mitk::TimeGeometryGetUpdatedTimeGeometry ()
 Return the TimeGeometry of the data. More...
 
const mitk::TimeGeometryGetUpdatedTimeSliceGeometry ()
 Return the TimeGeometry of the data. More...
 
virtual void Expand (unsigned int timeSteps)
 Expands the TimeGeometry to a number of TimeSteps. More...
 
const mitk::BaseGeometryGetUpdatedGeometry (int t=0)
 Return the BaseGeometry of the data at time t. More...
 
mitk::BaseGeometryGetGeometry (int t=0) const
 Return the geometry, which is a TimeGeometry, of the data as non-const pointer. More...
 
void UpdateOutputInformation () override
 Update the information for this BaseData (the geometry in particular) so that it can be used as an output of a BaseProcess. More...
 
void CopyInformation (const itk::DataObject *data) override
 Copy information from the specified data set. More...
 
virtual bool IsInitialized () const
 Check whether the data has been initialized, i.e., at least the Geometry and other header data has been set. More...
 
virtual void Clear ()
 Calls ClearData() and InitializeEmpty();. More...
 
virtual bool IsEmptyTimeStep (unsigned int t) const
 Check whether object contains data (at a specified time), e.g., a set of points may be empty. More...
 
void ExecuteOperation (Operation *operation) override
 overwrite if the Data can be called by an Interactor (StateMachine). More...
 
virtual void SetGeometry (BaseGeometry *aGeometry3D)
 Set the BaseGeometry of the data, which will be referenced (not copied!). Assumes the data object has only 1 time step ( is a 3D object ) and creates a new TimeGeometry which saves the given BaseGeometry. If an TimeGeometry has already been set for the object, it will be replaced after calling this function. More...
 
virtual void SetTimeGeometry (TimeGeometry *geometry)
 Set the TimeGeometry of the data, which will be referenced (not copied!). More...
 
virtual void SetClonedGeometry (const BaseGeometry *aGeometry3D)
 Set a clone of the provided Geometry as Geometry of the data. Assumes the data object has only 1 time step ( is a 3D object ) and creates a new TimeGeometry. If an TimeGeometry has already been set for the object, it will be replaced after calling this function. More...
 
virtual void SetClonedTimeGeometry (const TimeGeometry *geometry)
 Set a clone of the provided TimeGeometry as TimeGeometry of the data. More...
 
virtual void SetClonedGeometry (const BaseGeometry *aGeometry3D, unsigned int time)
 Set a clone of the provided geometry as BaseGeometry of a given time step. More...
 
mitk::PropertyList::Pointer GetPropertyList () const
 Get the data's property list. More...
 
void SetPropertyList (PropertyList *propertyList)
 Set the data's property list. More...
 
mitk::BaseProperty::Pointer GetProperty (const char *propertyKey) const
 Get the property (instance of BaseProperty) with key propertyKey from the PropertyList, and set it to this, respectively;. More...
 
void SetProperty (const char *propertyKey, BaseProperty *property)
 
virtual void SetOrigin (const Point3D &origin)
 Convenience method for setting the origin of the BaseGeometry instances of all time steps. More...
 
itk::SmartPointer< mitk::BaseDataSourceGetSource () const
 Get the process object that generated this data object. More...
 
unsigned int GetTimeSteps () const
 Get the number of time steps from the TimeGeometry As the base data has not a data vector given by itself, the number of time steps is defined over the time sliced geometry. In sub classes, a better implementation could be over the length of the data vector. More...
 
unsigned long GetMTime () const override
 Get the modified time of the last change of the contents this data object or its geometry. More...
 
void Graft (const DataObject *) override
 
- Public Member Functions inherited from mitk::OperationActor
 itkTypeMacroNoParent (OperationActor) virtual ~OperationActor()
 
- Public Member Functions inherited from mitk::Identifiable
 Identifiable ()
 
 Identifiable (const UIDType &uid)
 
 Identifiable (const Identifiable &)=delete
 
 Identifiable (Identifiable &&) noexcept
 
virtual ~Identifiable ()
 
Identifiableoperator= (const Identifiable &)=delete
 
Identifiableoperator= (Identifiable &&other) noexcept
 
virtual UIDType GetUID () const
 Get unique ID of an object. More...
 
- Public Member Functions inherited from mitk::IPropertyOwner
 ~IPropertyOwner () override
 
- Public Member Functions inherited from mitk::IPropertyProvider
virtual ~IPropertyProvider ()
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from mitk::BaseData
static const char * GetStaticNameOfClass ()
 

Additional Inherited Members

- Public Types inherited from mitk::BaseData
typedef BaseData Self
 
typedef itk::DataObject Superclass
 
typedef itk::SmartPointer< SelfPointer
 
typedef itk::SmartPointer< const SelfConstPointer
 
- Public Types inherited from mitk::Identifiable
using UIDType = std::string
 
- Protected Member Functions inherited from mitk::BaseData
 BaseData ()
 
 BaseData (const BaseData &other)
 
 ~BaseData () override
 
virtual void InitializeTimeGeometry (unsigned int timeSteps=1)
 Initialize the TimeGeometry for a number of time steps. The TimeGeometry is initialized empty and evenly timed. In many cases it will be necessary to overwrite this in sub-classes. More...
 
virtual void InitializeTimeSlicedGeometry (unsigned int timeSteps=1)
 Initialize the TimeGeometry for a number of time steps. The TimeGeometry is initialized empty and evenly timed. In many cases it will be necessary to overwrite this in sub-classes. More...
 
virtual void ClearData ()
 reset to non-initialized state, release memory More...
 
virtual void InitializeEmpty ()
 Pure virtual; Must be used in subclasses to get a data object to a valid state. Should at least create one empty object and call Superclass::InitializeTimeGeometry() to ensure an existing valid geometry. More...
 
void PrintSelf (std::ostream &os, itk::Indent indent) const override
 
- Protected Member Functions inherited from mitk::Identifiable
virtual void SetUID (const UIDType &uid)
 
- Protected Attributes inherited from mitk::BaseData
bool m_LastRequestedRegionWasOutsideOfTheBufferedRegion
 
unsigned int m_SourceOutputIndexDuplicate
 
bool m_Initialized
 

Detailed Description

Definition at line 24 of file mitkIntensityQuantifier.h.

Constructor & Destructor Documentation

◆ IntensityQuantifier()

mitk::IntensityQuantifier::IntensityQuantifier ( )

Definition at line 72 of file mitkIntensityQuantifier.cpp.

Member Function Documentation

◆ Clone()

Pointer mitk::IntensityQuantifier::Clone ( ) const

◆ GetBins()

virtual unsigned int mitk::IntensityQuantifier::GetBins ( ) const
virtual

◆ GetBinsize()

virtual double mitk::IntensityQuantifier::GetBinsize ( ) const
virtual

◆ GetInitialized()

virtual bool mitk::IntensityQuantifier::GetInitialized ( ) const
virtual

◆ GetMaximum()

virtual double mitk::IntensityQuantifier::GetMaximum ( ) const
virtual

◆ GetMinimum()

virtual double mitk::IntensityQuantifier::GetMinimum ( ) const
virtual

◆ IndexToMaximumIntensity()

double mitk::IntensityQuantifier::IndexToMaximumIntensity ( unsigned int  index)

Definition at line 192 of file mitkIntensityQuantifier.cpp.

◆ IndexToMeanIntensity()

double mitk::IntensityQuantifier::IndexToMeanIntensity ( unsigned int  index)

Definition at line 187 of file mitkIntensityQuantifier.cpp.

◆ IndexToMinimumIntensity()

double mitk::IntensityQuantifier::IndexToMinimumIntensity ( unsigned int  index)

Definition at line 182 of file mitkIntensityQuantifier.cpp.

◆ InitializeByBinsizeAndBins()

void mitk::IntensityQuantifier::InitializeByBinsizeAndBins ( double  minimum,
unsigned int  bins,
double  binsize 
)

Definition at line 88 of file mitkIntensityQuantifier.cpp.

◆ InitializeByBinsizeAndMaximum()

void mitk::IntensityQuantifier::InitializeByBinsizeAndMaximum ( double  minimum,
double  maximum,
double  binsize 
)

◆ InitializeByImage()

void mitk::IntensityQuantifier::InitializeByImage ( const Image image,
unsigned int  bins 
)

◆ InitializeByImageAndBinsize()

void mitk::IntensityQuantifier::InitializeByImageAndBinsize ( const Image image,
double  binsize 
)

◆ InitializeByImageAndBinsizeAndMaximum()

void mitk::IntensityQuantifier::InitializeByImageAndBinsizeAndMaximum ( const Image image,
double  maximum,
double  binsize 
)

◆ InitializeByImageAndBinsizeAndMinimum()

void mitk::IntensityQuantifier::InitializeByImageAndBinsizeAndMinimum ( const Image image,
double  minimum,
double  binsize 
)

◆ InitializeByImageAndMaximum()

void mitk::IntensityQuantifier::InitializeByImageAndMaximum ( const Image image,
double  maximum,
unsigned int  bins 
)

◆ InitializeByImageAndMinimum()

void mitk::IntensityQuantifier::InitializeByImageAndMinimum ( const Image image,
double  minimum,
unsigned int  bins 
)

◆ InitializeByImageRegion()

void mitk::IntensityQuantifier::InitializeByImageRegion ( const Image image,
const Image mask,
unsigned int  bins 
)

◆ InitializeByImageRegionAndBinsize()

void mitk::IntensityQuantifier::InitializeByImageRegionAndBinsize ( const Image image,
const Image mask,
double  binsize 
)

◆ InitializeByImageRegionAndBinsizeAndMaximum()

void mitk::IntensityQuantifier::InitializeByImageRegionAndBinsizeAndMaximum ( const Image image,
const Image mask,
double  maximum,
double  binsize 
)

◆ InitializeByImageRegionAndBinsizeAndMinimum()

void mitk::IntensityQuantifier::InitializeByImageRegionAndBinsizeAndMinimum ( const Image image,
const Image mask,
double  minimum,
double  binsize 
)

◆ InitializeByImageRegionAndMaximum()

void mitk::IntensityQuantifier::InitializeByImageRegionAndMaximum ( const Image image,
const Image mask,
double  maximum,
unsigned int  bins 
)

◆ InitializeByImageRegionAndMinimum()

void mitk::IntensityQuantifier::InitializeByImageRegionAndMinimum ( const Image image,
const Image mask,
double  minimum,
unsigned int  bins 
)

◆ InitializeByMinimumMaximum()

void mitk::IntensityQuantifier::InitializeByMinimumMaximum ( double  minimum,
double  maximum,
unsigned int  bins 
)

◆ IntensityToIndex()

unsigned int mitk::IntensityQuantifier::IntensityToIndex ( double  intensity)

Definition at line 176 of file mitkIntensityQuantifier.cpp.

◆ IsEmpty()

bool mitk::IntensityQuantifier::IsEmpty ( ) const
inlineoverridevirtual

Check whether object contains data (at least at one point in time), e.g., a set of points may be empty.

Warning
Returns IsInitialized()==false by default for compatibility reasons. Override in sub-classes that support distinction between empty/non-empty state.

Reimplemented from mitk::BaseData.

Definition at line 70 of file mitkIntensityQuantifier.h.

◆ mitkClassMacro()

mitk::IntensityQuantifier::mitkClassMacro ( IntensityQuantifier  ,
BaseData   
)

◆ New()

static Pointer mitk::IntensityQuantifier::New ( )
static

◆ RequestedRegionIsOutsideOfTheBufferedRegion()

bool mitk::IntensityQuantifier::RequestedRegionIsOutsideOfTheBufferedRegion ( )
inlineoverridevirtual

Determine whether the RequestedRegion is outside of the BufferedRegion.

This method returns true if the RequestedRegion is outside the BufferedRegion (true if at least one pixel is outside). This is used by the pipeline mechanism to determine whether a filter needs to re-execute in order to satisfy the current request. If the current RequestedRegion is already inside the BufferedRegion from the previous execution (and the current filter is up to date), then a given filter does not need to re-execute

Implements mitk::BaseData.

Definition at line 65 of file mitkIntensityQuantifier.h.

◆ SetRequestedRegion()

void mitk::IntensityQuantifier::SetRequestedRegion ( const itk::DataObject *  data)
inlineoverridevirtual

Set the requested region from this data object to match the requested region of the data object passed in as a parameter.

This method is implemented in the concrete subclasses of BaseData.

Implements mitk::BaseData.

Definition at line 67 of file mitkIntensityQuantifier.h.

◆ SetRequestedRegionToLargestPossibleRegion()

void mitk::IntensityQuantifier::SetRequestedRegionToLargestPossibleRegion ( )
inlineoverridevirtual

Set the RequestedRegion to the LargestPossibleRegion.

This forces a filter to produce all of the output in one execution (i.e. not streaming) on the next call to Update().

Implements mitk::BaseData.

Definition at line 64 of file mitkIntensityQuantifier.h.

◆ VerifyRequestedRegion()

bool mitk::IntensityQuantifier::VerifyRequestedRegion ( )
inlineoverridevirtual

Verify that the RequestedRegion is within the LargestPossibleRegion.

If the RequestedRegion is not within the LargestPossibleRegion, then the filter cannot possibly satisfy the request. This method returns true if the request can be satisfied (even if it will be necessary to process the entire LargestPossibleRegion) and returns false otherwise. This method is used by PropagateRequestedRegion(). PropagateRequestedRegion() throws a InvalidRequestedRegionError exception if the requested region is not within the LargestPossibleRegion.

Implements mitk::BaseData.

Definition at line 66 of file mitkIntensityQuantifier.h.


The documentation for this class was generated from the following files: