Medical Imaging Interaction Toolkit  2022.10.99-122321bb
Medical Imaging Interaction Toolkit

Base class for tools that fill a connected region of a 2D slice. More...

#include <mitkFillRegionBaseTool.h>

Inheritance diagram for mitk::FillRegionBaseTool:
Collaboration diagram for mitk::FillRegionBaseTool:

Public Member Functions

 mitkClassMacro (FillRegionBaseTool, SegTool2D)
 
- Public Member Functions inherited from mitk::SegTool2D
 mitkClassMacro (SegTool2D, Tool)
 
void SetShowMarkerNodes (bool)
 
void SetEnable3DInterpolation (bool)
 Enables or disables the 3D interpolation after writing back the 2D segmentation result, and defaults to true. More...
 
void Activated () override
 Called when the tool gets activated. More...
 
void Deactivated () override
 Called when the tool gets deactivated. More...
 
virtual void SetIsTimePointChangeAware (bool _arg)
 
virtual bool GetIsTimePointChangeAware ()
 
virtual void IsTimePointChangeAwareOn ()
 
virtual void IsTimePointChangeAwareOff ()
 
- Public Member Functions inherited from mitk::Tool
 mitkClassMacro (Tool, EventStateMachine)
 
virtual const char ** GetXPM () const =0
 Returns an icon in the XPM format. More...
 
virtual std::string GetIconPath () const
 Returns the path of an icon. More...
 
virtual us::ModuleResource GetCursorIconResource () const
 Returns the path of a cursor icon. More...
 
virtual us::ModuleResource GetIconResource () const
 Returns the tool button icon of the tool wrapped by a usModuleResource. More...
 
virtual const char * GetName () const =0
 Returns the name of this tool. Make it short! More...
 
virtual const char * GetGroup () const
 Name of a group. More...
 
virtual void InitializeStateMachine ()
 
virtual itk::Object::Pointer GetGUI (const std::string &toolkitPrefix, const std::string &toolkitPostfix)
 Interface for GUI creation. More...
 
virtual NodePredicateBase::ConstPointer GetReferenceDataPreference () const
 
virtual NodePredicateBase::ConstPointer GetWorkingDataPreference () const
 
DataNode::Pointer CreateEmptySegmentationNode (const Image *original, const std::string &organName, const mitk::Color &color) const
 
DataNode::Pointer CreateSegmentationNode (Image *image, const std::string &organName, const mitk::Color &color) const
 
virtual bool CanHandle (const BaseData *referenceData, const BaseData *workingData) const
 
- Public Member Functions inherited from mitk::EventStateMachine
virtual std::vector< std::string > GetClassHierarchy () const override
 
virtual const char * GetClassName () const
 
bool LoadStateMachine (const std::string &filename, const us::Module *module=nullptr)
 Loads XML resource. More...
 
bool HandleEvent (InteractionEvent *event, DataNode *dataNode)
 
void EnableUndo (bool enable)
 Enables or disabled Undo. More...
 
void EnableInteraction (bool enable)
 Enables/disables the state machine. In un-enabled state it won't react to any events. More...
 
- Public Member Functions inherited from mitk::InteractionEventHandler
bool SetEventConfig (const std::string &filename, const us::Module *module=nullptr)
 Loads a configuration from an XML resource. More...
 
bool SetEventConfig (const EventConfig &config)
 Loads a configuration from an EventConfig object. More...
 
EventConfig GetEventConfig () const
 Returns the current configuration. More...
 
bool AddEventConfig (const std::string &filename, const us::Module *module=nullptr)
 This method extends the configuration. More...
 
bool AddEventConfig (const EventConfig &config)
 This method extends the configuration. The configuration from the EventConfig object is loaded and only the ones conflicting are replaced by the new one. This way several configurations can be combined. More...
 
- Public Member Functions inherited from mitk::InteractionEventObserver
 InteractionEventObserver ()
 
virtual ~InteractionEventObserver ()
 
void Disable ()
 
void Enable ()
 
bool IsEnabled () const
 

Protected Member Functions

 FillRegionBaseTool ()
 
 ~FillRegionBaseTool () override
 
void ConnectActionsAndFunctions () override
 
virtual void OnClick (StateMachineAction *, InteractionEvent *interactionEvent)
 Add a control point and finish current segment. More...
 
virtual Image::Pointer GenerateFillImage (const Image *workingSlice, Point3D seedPoint, mitk::Label::PixelType &seedLabelValue) const
 
virtual void PrepareFilling (const Image *workingSlice, Point3D seedPoint)=0
 
- Protected Member Functions inherited from mitk::SegTool2D
 SegTool2D ()
 
 SegTool2D (const char *, const us::Module *interactorModule=nullptr)
 
 ~SegTool2D () override
 
DataNodeGetWorkingDataNode () const
 returns the segmentation node that should be modified by the tool. More...
 
ImageGetWorkingData () const
 
DataNodeGetReferenceDataNode () const
 
ImageGetReferenceData () const
 
virtual void OnTimePointChanged ()
 
bool FilterEvents (InteractionEvent *interactionEvent, DataNode *dataNode) override
 Filters events that cannot be handled by 2D segmentation tools. More...
 
Image::Pointer GetAffectedWorkingSlice (const InteractionPositionEvent *) const
 Extract the slice of the currently selected working image that the user just scribbles on. More...
 
Image::Pointer GetAffectedReferenceSlice (const InteractionPositionEvent *) const
 Extract the slice of the currently selected reference image that the user just scribbles on. More...
 
Image::Pointer GetAffectedReferenceSlice (const PlaneGeometry *planeGeometry, TimeStepType timeStep) const
 
void WriteBackSegmentationResult (const InteractionPositionEvent *, const Image *segmentationResult)
 
void WriteBackSegmentationResult (const PlaneGeometry *planeGeometry, const Image *segmentationResult, TimeStepType timeStep)
 
void WriteBackSegmentationResults (const std::vector< SliceInformation > &sliceList, bool writeSliceToVolume=true)
 
int AddContourmarker (const PlaneGeometry *planeGeometry, unsigned int sliceIndex)
 Adds a new node called Contourmarker to the datastorage which holds a mitk::PlanarFigure. By selecting this node the slicestack will be reoriented according to the passed PlanarFigure's Geometry. More...
 
void InteractiveSegmentationBugMessage (const std::string &message) const
 
virtual TimePointType GetLastTimePointTriggered ()
 
- Protected Member Functions inherited from mitk::Tool
virtual void SetToolManager (ToolManager *)
 
ToolManagerGetToolManager () const
 
mitk::DataStorageGetDataStorage () const
 
void ConnectActionsAndFunctions () override
 
 Tool (const char *, const us::Module *interactorModule=nullptr)
 
 ~Tool () override
 
void Notify (InteractionEvent *interactionEvent, bool isHandled) override
 
bool FilterEvents (InteractionEvent *, DataNode *) override
 
- Protected Member Functions inherited from mitk::EventStateMachine
 EventStateMachine ()
 
 ~EventStateMachine () override
 
void AddActionFunction (const std::string &action, TActionFunctor *functor)
 
void AddActionFunction (const std::string &action, const ActionFunctionDelegate &delegate)
 
void AddConditionFunction (const std::string &condition, const ConditionFunctionDelegate &delegate)
 
StateMachineStateGetCurrentState () const
 
void ResetToStartState ()
 ResetToStartState Reset state machine to it initial starting state. More...
 
virtual bool CheckCondition (const StateMachineCondition &condition, const InteractionEvent *interactionEvent)
 
virtual void ExecuteAction (StateMachineAction *action, InteractionEvent *interactionEvent)
 
void SetMouseCursor (const char *xpm[], int hotspotX, int hotspotY)
 Sets the specified mouse cursor. More...
 
void ResetMouseCursor ()
 Resets the mouse cursor to its original state. More...
 
StateMachineTransitionGetExecutableTransition (InteractionEvent *event)
 Returns the executable transition for the given event. More...
 
- Protected Member Functions inherited from mitk::InteractionEventHandler
 InteractionEventHandler ()
 
 ~InteractionEventHandler () override
 
PropertyList::Pointer GetAttributes () const
 
std::string MapToEventVariant (InteractionEvent *interactionEvent)
 
virtual void ConfigurationChanged ()
 

Protected Attributes

Label::PixelType m_FillLabelValue
 
Label::PixelType m_SeedLabelValue
 
MultiLabelSegmentation::MergeStyle m_MergeStyle
 
- Protected Attributes inherited from mitk::SegTool2D
BaseRendererm_LastEventSender
 
unsigned int m_LastEventSlice
 
- Protected Attributes inherited from mitk::Tool
std::string m_EventConfig
 Let subclasses change their event configuration. More...
 
- Protected Attributes inherited from mitk::EventStateMachine
bool m_IsActive
 
UndoControllerm_UndoController
 
bool m_UndoEnabled
 

Additional Inherited Members

- Public Types inherited from mitk::Tool
typedef mitk::Label::PixelType DefaultSegmentationDataType
 
- Public Types inherited from mitk::EventStateMachine
typedef EventStateMachine Self
 
typedef InteractionEventHandler Superclass
 
typedef itk::SmartPointer< SelfPointer
 
typedef itk::SmartPointer< const SelfConstPointer
 
typedef std::map< std::string, TActionFunctor * > ActionFunctionsMapType
 
typedef itk::SmartPointer< StateMachineStateStateMachineStateType
 
- Public Types inherited from mitk::InteractionEventHandler
typedef InteractionEventHandler Self
 
typedef itk::Object Superclass
 
typedef itk::SmartPointer< SelfPointer
 
typedef itk::SmartPointer< const SelfConstPointer
 
- Static Public Member Functions inherited from mitk::SegTool2D
static bool DetermineAffectedImageSlice (const Image *image, const PlaneGeometry *plane, int &affectedDimension, int &affectedSlice)
 Calculates for a given Image and PlaneGeometry, which slice of the image (in index corrdinates) is meant by the plane. More...
 
static void UpdateSurfaceInterpolation (const Image *slice, const Image *workingImage, const PlaneGeometry *plane, bool detectIntersection)
 Updates the surface interpolation by extracting the contour form the given slice. More...
 
static Image::Pointer GetAffectedImageSliceAs2DImage (const InteractionPositionEvent *positionEvent, const Image *image, unsigned int component=0)
 Extract the slice of an image that the user just scribbles on. The given component denotes the vector component of an vector image. More...
 
static Image::Pointer GetAffectedImageSliceAs2DImage (const PlaneGeometry *planeGeometry, const Image *image, TimeStepType timeStep, unsigned int component=0)
 Extract the slice of an image cut by given plane. The given component denotes the vector component of a vector image. More...
 
static Image::Pointer GetAffectedImageSliceAs2DImageByTimePoint (const PlaneGeometry *planeGeometry, const Image *image, TimePointType timePoint, unsigned int component=0)
 
static void WriteBackSegmentationResult (const DataNode *workingNode, const PlaneGeometry *planeGeometry, const Image *segmentationResult, TimeStepType timeStep)
 
static void WriteSliceToVolume (Image *workingImage, const PlaneGeometry *planeGeometry, const Image *slice, TimeStepType timeStep, bool allowUndo)
 
- Static Public Member Functions inherited from mitk::EventStateMachine
static const char * GetStaticNameOfClass ()
 
- Static Public Member Functions inherited from mitk::InteractionEventHandler
static const char * GetStaticNameOfClass ()
 
- Public Attributes inherited from mitk::Tool
Message GUIProcessEventsMessage
 To let GUI process new events (e.g. qApp->processEvents() ) More...
 
Message1< std::string > ErrorMessage
 To send error messages (to be shown by some GUI) More...
 
Message1< bool > CurrentlyBusy
 To send whether the tool is busy (to be shown by some GUI) More...
 
Message1< std::string > GeneralMessage
 To send general messages (to be shown by some GUI) More...
 
- Protected Types inherited from mitk::EventStateMachine
typedef MessageAbstractDelegate2< StateMachineAction *, InteractionEvent *, void > ActionFunctionDelegate
 
typedef MessageAbstractDelegate1< const InteractionEvent *, bool > ConditionFunctionDelegate
 
- Static Protected Member Functions inherited from mitk::SegTool2D
static void UpdateSurfaceInterpolation (const std::vector< SliceInformation > &sliceInfos, const Image *workingImage, bool detectIntersection)
 Updates the surface interpolation by extracting the contour form the given slice. More...
 
static void WriteBackSegmentationResults (const DataNode *workingNode, const std::vector< SliceInformation > &sliceList, bool writeSliceToVolume=true)
 Writes all provided source slices into the data of the passed workingNode. The function does the following: 1) for every passed slice write it to workingNode (and generate and undo/redo step); 2) update the surface interpolation and 3) marke the node as modified. More...
 
static void WritePreviewOnWorkingImage (Image *targetSlice, const Image *sourceSlice, const Image *workingImage, int paintingPixelValue)
 
static void WriteSliceToVolume (Image *workingImage, const SliceInformation &sliceInfo, bool allowUndo)
 
static bool IsPositionEventInsideImageRegion (InteractionPositionEvent *positionEvent, const BaseData *data)
 

Detailed Description

Base class for tools that fill a connected region of a 2D slice.

See also
Tool
Warning
Only to be instantiated by mitk::ToolManager.
Author
nolden

Definition at line 41 of file mitkFillRegionBaseTool.h.

Constructor & Destructor Documentation

◆ FillRegionBaseTool()

mitk::FillRegionBaseTool::FillRegionBaseTool ( )
protected

◆ ~FillRegionBaseTool()

mitk::FillRegionBaseTool::~FillRegionBaseTool ( )
overrideprotected

Member Function Documentation

◆ ConnectActionsAndFunctions()

void mitk::FillRegionBaseTool::ConnectActionsAndFunctions ( )
overrideprotectedvirtual

Is called after loading a statemachine. Overwrite this function in specific interactor implementations. Connect actions and functions using the CONNECT_FUNCTION macro within this function.

Reimplemented from mitk::EventStateMachine.

◆ GenerateFillImage()

virtual Image::Pointer mitk::FillRegionBaseTool::GenerateFillImage ( const Image workingSlice,
Point3D  seedPoint,
mitk::Label::PixelType seedLabelValue 
) const
protectedvirtual

Function that generates the mask image that indicates which pixels should be filled. Caller of this function assumes that all pixels that should be filled have the value 1. Pixels that should stay untouched should have the value 0. The default implementation marks the connected reagion around seedPoint, that has the same pixel value/label like the seedPoint. You may reimplement this function to change the strategy to determin the fill region.

Parameters
workingSlicepart of the segmentation image that should be used to determin the fill image.
seedPointThe world coordinate position where the user has cliced.
[out]seedLabelValueThe function should return the label value that should be assumed as clicked on, given the seedPoint.
Returns
Return the image maske that indicates which pixels should be filled. Returning a null pointer indicates that there is nothing to fill.

Reimplemented in mitk::EraseRegionTool, and mitk::CloseRegionTool.

◆ mitkClassMacro()

mitk::FillRegionBaseTool::mitkClassMacro ( FillRegionBaseTool  ,
SegTool2D   
)

◆ OnClick()

virtual void mitk::FillRegionBaseTool::OnClick ( StateMachineAction ,
InteractionEvent interactionEvent 
)
protectedvirtual

Add a control point and finish current segment.

◆ PrepareFilling()

virtual void mitk::FillRegionBaseTool::PrepareFilling ( const Image workingSlice,
Point3D  seedPoint 
)
protectedpure virtual

Function that is called by OnClick before the filling is executed. If you want to do special preperation (e.g. change m_FillLabelValue, you can overwrite this function.

Implemented in mitk::EraseRegionTool, mitk::CloseRegionTool, and mitk::FillRegionTool.

Member Data Documentation

◆ m_FillLabelValue

Label::PixelType mitk::FillRegionBaseTool::m_FillLabelValue
protected

Definition at line 74 of file mitkFillRegionBaseTool.h.

◆ m_MergeStyle

MultiLabelSegmentation::MergeStyle mitk::FillRegionBaseTool::m_MergeStyle
protected

Definition at line 77 of file mitkFillRegionBaseTool.h.

◆ m_SeedLabelValue

Label::PixelType mitk::FillRegionBaseTool::m_SeedLabelValue
protected

Definition at line 75 of file mitkFillRegionBaseTool.h.


The documentation for this class was generated from the following file: