mitk::BinaryThresholdTool Class Reference

Calculates the segmented volumes for binary images. More...

#include <mitkBinaryThresholdTool.h>

Inheritance diagram for mitk::BinaryThresholdTool:

Collaboration diagram for mitk::BinaryThresholdTool:

Public Member Functions
	mitkClassMacro (BinaryThresholdTool, BinaryThresholdBaseTool)
Pointer	Clone () const
const char **	GetXPM () const override
	Returns an icon in the XPM format. More...
us::ModuleResource	GetIconResource () const override
	Returns the tool button icon of the tool wrapped by a usModuleResource. More...
const char *	GetName () const override
	Returns the name of this tool. Make it short! More...
virtual void	SetThresholdValue (double value)
Public Member Functions inherited from mitk::BinaryThresholdBaseTool
	mitkClassMacro (BinaryThresholdBaseTool, SegWithPreviewTool)
virtual void	SetThresholdValues (double lower, double upper)
Public Member Functions inherited from mitk::SegWithPreviewTool
	mitkClassMacro (SegWithPreviewTool, Tool)
void	Activated () override
	Called when the tool gets activated. More...
void	Deactivated () override
	Called when the tool gets deactivated. More...
void	ConfirmSegmentation ()
virtual void	SetCreateAllTimeSteps (bool _arg)
virtual bool	GetCreateAllTimeSteps ()
virtual void	CreateAllTimeStepsOn ()
virtual void	CreateAllTimeStepsOff ()
virtual void	SetKeepActiveAfterAccept (bool _arg)
virtual bool	GetKeepActiveAfterAccept ()
virtual void	KeepActiveAfterAcceptOn ()
virtual void	KeepActiveAfterAcceptOff ()
virtual void	SetIsTimePointChangeAware (bool _arg)
virtual bool	GetIsTimePointChangeAware ()
virtual void	IsTimePointChangeAwareOn ()
virtual void	IsTimePointChangeAwareOff ()
virtual void	SetResetsToEmptyPreview (bool _arg)
virtual bool	GetResetsToEmptyPreview ()
virtual void	ResetsToEmptyPreviewOn ()
virtual void	ResetsToEmptyPreviewOff ()
virtual void	SetUseSpecialPreviewColor (bool _arg)
virtual bool	GetUseSpecialPreviewColor ()
virtual void	UseSpecialPreviewColorOn ()
virtual void	UseSpecialPreviewColorOff ()
virtual void	SetRequestDeactivationConfirmation (bool _arg)
virtual bool	GetRequestDeactivationConfirmation ()
virtual void	RequestDeactivationConfirmationOn ()
virtual void	RequestDeactivationConfirmationOff ()
void	SetMergeStyle (MultiLabelSegmentation::MergeStyle mergeStyle)
virtual MultiLabelSegmentation::MergeStyle	GetMergeStyle ()
void	SetOverwriteStyle (MultiLabelSegmentation::OverwriteStyle overwriteStyle)
virtual MultiLabelSegmentation::OverwriteStyle	GetOverwriteStyle ()
void	SetLabelTransferScope (LabelTransferScope labelTransferScope)
virtual LabelTransferScope	GetLabelTransferScope ()
void	SetSelectedLabels (const SelectedLabelVectorType &labelsToTransfer)
virtual SelectedLabelVectorType	GetSelectedLabels ()
void	SetLabelTransferMode (LabelTransferMode labelTransferMode)
virtual LabelTransferMode	GetLabelTransferMode ()
bool	CanHandle (const BaseData *referenceData, const BaseData *workingData) const override
void	UpdatePreview (bool ignoreLazyPreviewSetting=false)
bool	IsUpdating () const
std::string	GetCurrentSegmentationName ()
	Gets the name of the currently selected segmentation node. More...
virtual DataNode *	GetTargetSegmentationNode () const
	Returns the currently selected segmentation node. More...
LabelSetImage *	GetTargetSegmentation () const
LabelSetImage *	GetPreviewSegmentation ()
const LabelSetImage *	GetPreviewSegmentation () const
DataNode *	GetPreviewSegmentationNode ()
Public Member Functions inherited from mitk::Tool
	mitkClassMacro (Tool, EventStateMachine)
virtual std::string	GetIconPath () const
	Returns the path of an icon. More...
virtual us::ModuleResource	GetCursorIconResource () const
	Returns the path of a cursor icon. More...
virtual void	InitializeStateMachine ()
virtual itk::Object::Pointer	GetGUI (const std::string &toolkitPrefix, const std::string &toolkitPostfix)
	Interface for GUI creation. More...
virtual NodePredicateBase::ConstPointer	GetReferenceDataPreference () const
virtual NodePredicateBase::ConstPointer	GetWorkingDataPreference () const
DataNode::Pointer	CreateEmptySegmentationNode (const Image *original, const std::string &organName, const mitk::Color &color) const
DataNode::Pointer	CreateSegmentationNode (Image *image, const std::string &organName, const mitk::Color &color) const
Public Member Functions inherited from mitk::EventStateMachine
virtual std::vector< std::string >	GetClassHierarchy () const override
virtual const char *	GetClassName () const
bool	LoadStateMachine (const std::string &filename, const us::Module *module=nullptr)
	Loads XML resource. More...
bool	HandleEvent (InteractionEvent *event, DataNode *dataNode)
void	EnableUndo (bool enable)
	Enables or disabled Undo. More...
void	EnableInteraction (bool enable)
	Enables/disables the state machine. In un-enabled state it won't react to any events. More...
Public Member Functions inherited from mitk::InteractionEventHandler
bool	SetEventConfig (const std::string &filename, const us::Module *module=nullptr)
	Loads a configuration from an XML resource. More...
bool	SetEventConfig (const EventConfig &config)
	Loads a configuration from an EventConfig object. More...
EventConfig	GetEventConfig () const
	Returns the current configuration. More...
bool	AddEventConfig (const std::string &filename, const us::Module *module=nullptr)
	This method extends the configuration. More...
bool	AddEventConfig (const EventConfig &config)
	This method extends the configuration. The configuration from the EventConfig object is loaded and only the ones conflicting are replaced by the new one. This way several configurations can be combined. More...
Public Member Functions inherited from mitk::InteractionEventObserver
	InteractionEventObserver ()
virtual	~InteractionEventObserver ()
void	Disable ()
void	Enable ()
bool	IsEnabled () const

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from mitk::EventStateMachine
static const char *	GetStaticNameOfClass ()
Static Public Member Functions inherited from mitk::InteractionEventHandler
static const char *	GetStaticNameOfClass ()

Protected Member Functions
	BinaryThresholdTool ()
	~BinaryThresholdTool () override
Protected Member Functions inherited from mitk::BinaryThresholdBaseTool
	BinaryThresholdBaseTool ()
	~BinaryThresholdBaseTool () override
virtual void	SetLockedUpperThreshold (bool _arg)
virtual bool	GetLockedUpperThreshold ()
virtual void	LockedUpperThresholdOn ()
virtual void	LockedUpperThresholdOff ()
virtual ScalarType	GetSensibleMinimumThreshold ()
virtual ScalarType	GetSensibleMaximumThreshold ()
void	InitiateToolByInput () override
void	DoUpdatePreview (const Image *inputAtTimeStep, const Image *oldSegAtTimeStep, LabelSetImage *previewImage, TimeStepType timeStep) override
template<typename TPixel , unsigned int VImageDimension>
void	ITKThresholding (const itk::Image< TPixel, VImageDimension > *inputImage, LabelSetImage *segmentation, unsigned int timeStep)
Protected Member Functions inherited from mitk::SegWithPreviewTool
	SegWithPreviewTool (bool lazyDynamicPreviews=false)
	SegWithPreviewTool (bool lazyDynamicPreviews, const char *interactorType, const us::Module *interactorModule=nullptr)
	~SegWithPreviewTool () override
const char *	GetGroup () const override
	Name of a group. More...
void	EnsureTargetSegmentationNodeInDataStorage () const
virtual void	UpdatePrepare ()
virtual void	UpdateCleanUp ()
virtual void	ConfirmCleanUp ()
virtual void	PreparePreviewToResultTransfer (const LabelMappingType &labelMapping)
const Image *	GetSegmentationInput () const
const Image *	GetReferenceData () const
void	ResetPreviewNode ()
void	ResetPreviewContent ()
void	ResetPreviewContentAtTimeStep (unsigned int timeStep)
TimePointType	GetLastTimePointOfUpdate () const
LabelSetImage::LabelValueType	GetActiveLabelValueOfPreview () const
virtual Label::PixelType	GetUserDefinedActiveLabel () const
virtual void	SetWorkingPlaneGeometry (PlaneGeometry *_arg)
virtual const PlaneGeometry *	GetWorkingPlaneGeometry ()
bool	ConfirmBeforeDeactivation () override
	Method call to invoke a dialog box just before exiting. The method can be reimplemented in the respective tool class with business logic on when there should be a confirmation dialog from the user before the tool exits. More...
Protected Member Functions inherited from mitk::Tool
virtual void	SetToolManager (ToolManager *)
ToolManager *	GetToolManager () const
mitk::DataStorage *	GetDataStorage () const
void	ConnectActionsAndFunctions () override
	Tool (const char *, const us::Module *interactorModule=nullptr)
	~Tool () override
void	Notify (InteractionEvent *interactionEvent, bool isHandled) override
bool	FilterEvents (InteractionEvent *, DataNode *) override
Protected Member Functions inherited from mitk::EventStateMachine
	EventStateMachine ()
	~EventStateMachine () override
void	AddActionFunction (const std::string &action, TActionFunctor *functor)
void	AddActionFunction (const std::string &action, const ActionFunctionDelegate &delegate)
void	AddConditionFunction (const std::string &condition, const ConditionFunctionDelegate &delegate)
StateMachineState *	GetCurrentState () const
void	ResetToStartState ()
	ResetToStartState Reset state machine to it initial starting state. More...
virtual bool	CheckCondition (const StateMachineCondition &condition, const InteractionEvent *interactionEvent)
virtual void	ExecuteAction (StateMachineAction *action, InteractionEvent *interactionEvent)
void	SetMouseCursor (const char *xpm[], int hotspotX, int hotspotY)
	Sets the specified mouse cursor. More...
void	ResetMouseCursor ()
	Resets the mouse cursor to its original state. More...
StateMachineTransition *	GetExecutableTransition (InteractionEvent *event)
	Returns the executable transition for the given event. More...
Protected Member Functions inherited from mitk::InteractionEventHandler
	InteractionEventHandler ()
	~InteractionEventHandler () override
PropertyList::Pointer	GetAttributes () const
std::string	MapToEventVariant (InteractionEvent *interactionEvent)
virtual void	ConfigurationChanged ()

Additional Inherited Members
Public Types inherited from mitk::SegWithPreviewTool
enum	LabelTransferScope { LabelTransferScope::ActiveLabel, LabelTransferScope::SelectedLabels, LabelTransferScope::AllLabels }
enum	LabelTransferMode { LabelTransferMode::MapLabel, LabelTransferMode::AddLabel }
using	SelectedLabelVectorType = std::vector< Label::PixelType >
Public Types inherited from mitk::Tool
typedef mitk::Label::PixelType	DefaultSegmentationDataType
Public Types inherited from mitk::EventStateMachine
typedef EventStateMachine	Self
typedef InteractionEventHandler	Superclass
typedef itk::SmartPointer< Self >	Pointer
typedef itk::SmartPointer< const Self >	ConstPointer
typedef std::map< std::string, TActionFunctor * >	ActionFunctionsMapType
typedef itk::SmartPointer< StateMachineState >	StateMachineStateType
Public Types inherited from mitk::InteractionEventHandler
typedef InteractionEventHandler	Self
typedef itk::Object	Superclass
typedef itk::SmartPointer< Self >	Pointer
typedef itk::SmartPointer< const Self >	ConstPointer
Public Attributes inherited from mitk::BinaryThresholdBaseTool
Message3< double, double, bool >	IntervalBordersChanged
Message2< ScalarType, ScalarType >	ThresholdingValuesChanged
Public Attributes inherited from mitk::Tool
Message	GUIProcessEventsMessage
	To let GUI process new events (e.g. qApp->processEvents() ) More...
Message1< std::string >	ErrorMessage
	To send error messages (to be shown by some GUI) More...
Message1< bool >	CurrentlyBusy
	To send whether the tool is busy (to be shown by some GUI) More...
Message1< std::string >	GeneralMessage
	To send general messages (to be shown by some GUI) More...
Protected Types inherited from mitk::SegWithPreviewTool
using	LabelMappingType = std::vector< std::pair< Label::PixelType, Label::PixelType > >
Protected Types inherited from mitk::EventStateMachine
typedef MessageAbstractDelegate2< StateMachineAction *, InteractionEvent *, void >	ActionFunctionDelegate
typedef MessageAbstractDelegate1< const InteractionEvent *, bool >	ConditionFunctionDelegate
Static Protected Member Functions inherited from mitk::SegWithPreviewTool
static Image::ConstPointer	GetImageByTimeStep (const Image *image, TimeStepType timestep)
static Image::Pointer	GetImageByTimeStep (Image *image, TimeStepType timestep)
static Image::ConstPointer	GetImageByTimePoint (const Image *image, TimePointType timePoint)
static void	TransferLabelInformation (const LabelMappingType &labelMapping, const mitk::LabelSetImage *source, mitk::LabelSetImage *target)
static void	TransferLabelSetImageContent (const LabelSetImage *source, LabelSetImage *target, TimeStepType timeStep)
Protected Attributes inherited from mitk::SegWithPreviewTool
ToolCommand::Pointer	m_ProgressCommand
Protected Attributes inherited from mitk::Tool
std::string	m_EventConfig
	Let subclasses change their event configuration. More...
Protected Attributes inherited from mitk::EventStateMachine
bool	m_IsActive
UndoController *	m_UndoController
bool	m_UndoEnabled

Detailed Description

Calculates the segmented volumes for binary images.

See also

mitk::Tool

QmitkInteractiveSegmentation

Last contributor: $Author$

Definition at line 35 of file mitkBinaryThresholdTool.h.

Constructor & Destructor Documentation

BinaryThresholdTool()

mitk::BinaryThresholdTool::BinaryThresholdTool ( )

protected

~BinaryThresholdTool()

mitk::BinaryThresholdTool::~BinaryThresholdTool ( )

overrideprotected

Member Function Documentation

Clone()

Pointer mitk::BinaryThresholdTool::Clone

(

)

const

GetIconResource()

us::ModuleResource mitk::BinaryThresholdTool::GetIconResource ( ) const

overridevirtual

Returns the tool button icon of the tool wrapped by a usModuleResource.

Returns

a valid ModuleResource or an invalid if this function is not reimplemented

Reimplemented from mitk::Tool.

GetName()

const char* mitk::BinaryThresholdTool::GetName ( ) const

overridevirtual

Returns the name of this tool. Make it short!

This name has to fit into some kind of button in most applications, so take some time to think of a good name!

Implements mitk::Tool.

GetXPM()

const char** mitk::BinaryThresholdTool::GetXPM ( ) const

overridevirtual

Returns an icon in the XPM format.

This icon has to fit into some kind of button in most applications, so make it smaller than 25x25 pixels.

XPM is e.g. supported by The Gimp. But if you open any XPM file in your text editor, you will see that you could also "draw" it with an editor.

Implements mitk::Tool.

mitkClassMacro()

mitk::BinaryThresholdTool::mitkClassMacro	(	BinaryThresholdTool	,
		BinaryThresholdBaseTool
	)

New()

static Pointer mitk::BinaryThresholdTool::New ( )

static

SetThresholdValue()

virtual void mitk::BinaryThresholdTool::SetThresholdValue ( double  value )

virtual

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The documentation for this class was generated from the following file:

• mitkBinaryThresholdTool.h