mitkModelSignalImageGenerator.h

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/*============================================================================
 
The Medical Imaging Interaction Toolkit (MITK)
 
Copyright (c) German Cancer Research Center (DKFZ)
All rights reserved.
 
Use of this source code is governed by a 3-clause BSD license that can be
found in the LICENSE file.
 
============================================================================*/
 
#ifndef mitkModelSignalImageGenerator_h
#define mitkModelSignalImageGenerator_h
 
 
#include "mitkModelParameterizerBase.h"
#include "mitkImage.h"
 
#include "MitkModelFitExports.h"
 
namespace mitk
{
    class MITKMODELFIT_EXPORT ModelSignalImageGenerator: public ::itk::Object
    {
    public:
 
        mitkClassMacroItkParent(ModelSignalImageGenerator, itk::Object);
        itkFactorylessNewMacro(Self);
 
        typedef mitk::Image::Pointer ParameterImageType;
        typedef std::vector<std::string> ParameterNamesType;
        typedef unsigned int ParametersIndexType;
        typedef std::vector<ParameterImageType> ParameterVectorType;
        typedef std::map<ParametersIndexType, ParameterImageType> ParameterMapType;
 
 
        typedef mitk::Image::Pointer ResultImageType;
        typedef mitk::Image::Pointer MaskType;
 
        typedef mitk::ModelBase::TimeGridType GridType;
 
        itkSetObjectMacro(Parameterizer, ModelParameterizerBase);
        itkGetObjectMacro(Parameterizer, ModelParameterizerBase);
 
        void SetParameterInputImage(const ParametersIndexType index, ParameterImageType inputParameterImage);
 
        ResultImageType GetGeneratedImage();
        void Generate();
 
    protected:
        ModelSignalImageGenerator()
        {};
        ~ModelSignalImageGenerator() override
        {};
 
        template <typename TPixel, unsigned int VDim>
        void DoGenerateData(itk::Image<TPixel, VDim>* image);
 
        template <typename TPixel, unsigned int VDim>
        void DoPrepareMask(itk::Image<TPixel, VDim>* image);
 
    private:
        ParameterMapType m_ParameterInputMap;
        ParameterVectorType  m_InputParameterImages;
 
        void SortParameterImages();
 
        MaskType m_Mask;
 
        typedef itk::Image<unsigned char, 3> InternalMaskType;
        InternalMaskType::Pointer m_InternalMask;
 
        ResultImageType m_ResultImage;
        ModelParameterizerBase::Pointer m_Parameterizer;
    };
}
 
 
#endif