mitkGIFGreyLevelDistanceZone.h

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/*============================================================================

The Medical Imaging Interaction Toolkit (MITK)

Copyright (c) German Cancer Research Center (DKFZ)
All rights reserved.

Use of this source code is governed by a 3-clause BSD license that can be
found in the LICENSE file.

============================================================================*/

#ifndef mitkGIFGreyLevelDistanceZone_h
#define mitkGIFGreyLevelDistanceZone_h

#include <mitkAbstractGlobalImageFeature.h>
#include <mitkBaseData.h>
#include <MitkCLUtilitiesExports.h>

#include <Eigen/src/Core/Array.h>

namespace mitk
{
  struct GreyLevelDistanceZoneFeatures
  {
    GreyLevelDistanceZoneFeatures() :
      SmallDistanceEmphasis(0),
      LargeDistanceEmphasis(0),
      LowGreyLevelEmphasis(0),
      HighGreyLevelEmphasis(0),
      SmallDistanceLowGreyLevelEmphasis(0),
      SmallDistanceHighGreyLevelEmphasis(0),
      LargeDistanceLowGreyLevelEmphasis(0),
      LargeDistanceHighGreyLevelEmphasis(0),
      GreyLevelNonUniformity(0),
      GreyLevelNonUniformityNormalized(0),
      ZoneDistanceNonUniformity(0),
      ZoneDistanceNoneUniformityNormalized(0),
      ZonePercentage(0),
      GreyLevelMean(0),
      GreyLevelVariance(0),
      ZoneDistanceMean(0),
      ZoneDistanceVariance(0),
      ZoneDistanceEntropy(0)
    {
    }

  public:
    double SmallDistanceEmphasis;
    double LargeDistanceEmphasis;
    double LowGreyLevelEmphasis;
    double HighGreyLevelEmphasis;
    double SmallDistanceLowGreyLevelEmphasis;
    double SmallDistanceHighGreyLevelEmphasis;
    double LargeDistanceLowGreyLevelEmphasis;
    double LargeDistanceHighGreyLevelEmphasis;
    double GreyLevelNonUniformity;
    double GreyLevelNonUniformityNormalized;
    double ZoneDistanceNonUniformity;
    double ZoneDistanceNoneUniformityNormalized;
    double ZonePercentage;
    double GreyLevelMean;
    double GreyLevelVariance;
    double ZoneDistanceMean;
    double ZoneDistanceVariance;
    double ZoneDistanceEntropy;
  };


  class MITKCLUTILITIES_EXPORT GIFGreyLevelDistanceZone : public AbstractGlobalImageFeature
  {
    public:
      mitkClassMacro(GIFGreyLevelDistanceZone, AbstractGlobalImageFeature);
      itkFactorylessNewMacro(Self);
      itkCloneMacro(Self);

      GIFGreyLevelDistanceZone();

      FeatureListType CalculateFeatures(const Image::Pointer & image, const Image::Pointer &feature) override;

      FeatureNameListType GetFeatureNames() override;

      void CalculateFeaturesUsingParameters(const Image::Pointer & feature, const Image::Pointer &mask, const Image::Pointer &maskNoNAN, FeatureListType &featureList) override;
      void AddArguments(mitkCommandLineParser &parser) override;

      std::string GetCurrentFeatureEncoding() override;

      struct GIFGreyLevelDistanceZoneConfiguration
    {
      mitk::Image::Pointer distanceMask;

      mitk::IntensityQuantifier::Pointer Quantifier;

      unsigned int direction;
      double MinimumIntensity;
      double MaximumIntensity;
      int Bins;
      std::string prefix;
    };

    private:
  };

}
#endif //mitkGIFGreyLevelDistanceZone_h