mitkGIFCooccurenceMatrix2.h

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/*============================================================================

The Medical Imaging Interaction Toolkit (MITK)

Copyright (c) German Cancer Research Center (DKFZ)
All rights reserved.

Use of this source code is governed by a 3-clause BSD license that can be
found in the LICENSE file.

============================================================================*/

#ifndef mitkGIFCooccurenceMatrix2_h
#define mitkGIFCooccurenceMatrix2_h

#include <mitkAbstractGlobalImageFeature.h>
#include <mitkBaseData.h>
#include <MitkCLUtilitiesExports.h>

#include <Eigen/src/Core/Array.h>

namespace mitk
{

  class MITKCLUTILITIES_EXPORT GIFCooccurenceMatrix2 : public AbstractGlobalImageFeature
  {
    public:
      mitkClassMacro(GIFCooccurenceMatrix2, AbstractGlobalImageFeature);
      itkFactorylessNewMacro(Self);
      itkCloneMacro(Self);

      GIFCooccurenceMatrix2();

      FeatureListType CalculateFeatures(const Image::Pointer & image, const Image::Pointer &feature) override;

      FeatureNameListType GetFeatureNames() override;

      void CalculateFeaturesUsingParameters(const Image::Pointer & feature, const Image::Pointer &mask, const Image::Pointer &maskNoNAN, FeatureListType &featureList) override;
      void AddArguments(mitkCommandLineParser &parser) override;
      std::string GetCurrentFeatureEncoding() override;

      itkGetConstMacro(Range,double);
      itkSetMacro(Range, double);

    struct GIFCooccurenceMatrix2Configuration
    {
      double range;
      unsigned int direction;

      double MinimumIntensity;
      double MaximumIntensity;
      int Bins;
      std::string prefix;
    };

    private:
      double m_Range;
  };

}
#endif //mitkGIFCooccurenceMatrix2_h