#include <mitkPAInSilicoTissueVolume.h>

Inheritance diagram for mitk::pa::InSilicoTissueVolume:

Collaboration diagram for mitk::pa::InSilicoTissueVolume:

Public Types
enum	SegmentationType { AIR, BACKGROUND, VESSEL, FAT, SKIN }

Public Member Functions
	mitkClassMacroItkParent (InSilicoTissueVolume, itk::LightObject)

	mitkNewMacro2Param (Self, TissueGeneratorParameters::Pointer, std::mt19937 *)

mitk::Image::Pointer	ConvertToMitkImage ()
	ConvertToMitkImage. More...

void	SetVolumeValues (int x, int y, int z, double absorption, double scattering, double anisotropy, SegmentationType segmentType)
	SetVolumeValues sets the values for aborption, scattering and anisotropy at the specified voxel location. More...

void	SetVolumeValues (int x, int y, int z, double absorption, double scattering, double anisotropy)
	SetVolumeValues sets the values for aborption, scattering and anisotropy at the specified voxel location. More...

bool	IsInsideVolume (int x, int y, int z)
	IsInsideVolume. More...

void	AddDoubleProperty (std::string label, double value)
	AddDoubleProperty adds a persistent property to the volume, which will be exported to the mitk image. More...

void	AddIntProperty (std::string label, int value)
	AddIntProperty adds a persistent property to the volume, which will be exported to the mitk image. More...

Volume::Pointer	GetAbsorptionVolume ()

Volume::Pointer	GetScatteringVolume ()

Volume::Pointer	GetAnisotropyVolume ()

Volume::Pointer	GetSegmentationVolume ()

void	SetAbsorptionVolume (Volume::Pointer volume)

void	SetScatteringVolume (Volume::Pointer volume)

void	SetAnisotropyVolume (Volume::Pointer volume)

void	SetSegmentationVolume (Volume::Pointer volume)

double	GetSpacing ()

void	SetSpacing (double spacing)

void	FinalizeVolume ()

virtual TissueGeneratorParameters::Pointer	GetTissueParameters ()

virtual unsigned int	GetTDim ()

Static Public Member Functions
static InSilicoTissueVolume::Pointer	New (mitk::pa::Volume::Pointer absorptionVolume, Volume::Pointer scatteringVolume, Volume::Pointer anisotropyVolume, Volume::Pointer segmentationVolume, TissueGeneratorParameters::Pointer tissueParameters, mitk::PropertyList::Pointer propertyList)

Protected Member Functions
	InSilicoTissueVolume (TissueGeneratorParameters::Pointer parameters, std::mt19937 *rng)

	InSilicoTissueVolume (Volume::Pointer absorptionVolume, Volume::Pointer scatteringVolume, Volume::Pointer anisotropyVolume, Volume::Pointer segmentationVolume, TissueGeneratorParameters::Pointer tissueParameters, mitk::PropertyList::Pointer propertyList)

	~InSilicoTissueVolume () override

void	RandomizeTissueCoefficients (long rngSeed, bool useRngSeed, double percentage)

Protected Attributes
mitk::pa::Volume::Pointer	m_AbsorptionVolume

mitk::pa::Volume::Pointer	m_ScatteringVolume

mitk::pa::Volume::Pointer	m_AnisotropyVolume

mitk::pa::Volume::Pointer	m_SegmentationVolume

TissueGeneratorParameters::Pointer	m_TissueParameters

unsigned int	m_TDim

double	m_InitialBackgroundAbsorption

std::mt19937 *	m_Rng

mitk::PropertyList::Pointer	m_PropertyList

Detailed Description

Definition at line 28 of file mitkPAInSilicoTissueVolume.h.

Member Enumeration Documentation

◆ SegmentationType

enum mitk::pa::InSilicoTissueVolume::SegmentationType

Enumerator
AIR
BACKGROUND
VESSEL
FAT
SKIN

Definition at line 34 of file mitkPAInSilicoTissueVolume.h.

Constructor & Destructor Documentation

◆ InSilicoTissueVolume() [1/2]

mitk::pa::InSilicoTissueVolume::InSilicoTissueVolume	(	TissueGeneratorParameters::Pointer	parameters,
		std::mt19937 *	rng
	)

protected

Definition at line 23 of file mitkPAInSilicoTissueVolume.cpp.

References AddDoubleProperty(), AddIntProperty(), m_AbsorptionVolume, m_AnisotropyVolume, m_InitialBackgroundAbsorption, m_PropertyList, m_Rng, m_ScatteringVolume, m_SegmentationVolume, m_TDim, m_TissueParameters, mitk::pa::Volume::New(), and mitk::PropertyList::New().

Referenced by New().

◆ InSilicoTissueVolume() [2/2]

mitk::pa::InSilicoTissueVolume::InSilicoTissueVolume	(	Volume::Pointer	absorptionVolume,
		Volume::Pointer	scatteringVolume,
		Volume::Pointer	anisotropyVolume,
		Volume::Pointer	segmentationVolume,
		TissueGeneratorParameters::Pointer	tissueParameters,
		mitk::PropertyList::Pointer	propertyList
	)

protected

Definition at line 84 of file mitkPAInSilicoTissueVolume.cpp.

References m_AbsorptionVolume, m_AnisotropyVolume, m_PropertyList, m_ScatteringVolume, m_SegmentationVolume, m_TDim, and m_TissueParameters.

◆ ~InSilicoTissueVolume()

mitk::pa::InSilicoTissueVolume::~InSilicoTissueVolume ( )

overrideprotected

Definition at line 178 of file mitkPAInSilicoTissueVolume.cpp.

References m_AbsorptionVolume, m_AnisotropyVolume, m_PropertyList, m_ScatteringVolume, m_SegmentationVolume, and m_TissueParameters.

Member Function Documentation

◆ AddDoubleProperty()

void mitk::pa::InSilicoTissueVolume::AddDoubleProperty	(	std::string	label,
		double	value
	)

AddDoubleProperty adds a persistent property to the volume, which will be exported to the mitk image.

Parameters

label
value

Definition at line 120 of file mitkPAInSilicoTissueVolume.cpp.

References mitk::IPropertyPersistence::AddInfo(), mitk::CoreServices::GetPropertyPersistence(), m_PropertyList, and mitk::PropertyPersistenceInfo::New().

Referenced by InSilicoTissueVolume().

◆ AddIntProperty()

void mitk::pa::InSilicoTissueVolume::AddIntProperty	(	std::string	label,
		int	value
	)

AddIntProperty adds a persistent property to the volume, which will be exported to the mitk image.

Parameters

label
value

Definition at line 126 of file mitkPAInSilicoTissueVolume.cpp.

References mitk::IPropertyPersistence::AddInfo(), mitk::CoreServices::GetPropertyPersistence(), m_PropertyList, and mitk::PropertyPersistenceInfo::New().

Referenced by InSilicoTissueVolume().

◆ ConvertToMitkImage()

mitk::Image::Pointer mitk::pa::InSilicoTissueVolume::ConvertToMitkImage ( )

ConvertToMitkImage.

Returns: a pointer to an mitk image containing this volume.

Definition at line 132 of file mitkPAInSilicoTissueVolume.cpp.

References mitk::Image::CopyMemory, m_AbsorptionVolume, m_AnisotropyVolume, m_PropertyList, m_ScatteringVolume, m_SegmentationVolume, m_TDim, m_TissueParameters, and mitk::Image::New().

◆ FinalizeVolume()

void mitk::pa::InSilicoTissueVolume::FinalizeVolume ( )

Definition at line 229 of file mitkPAInSilicoTissueVolume.cpp.

References mitk::eps, IsInsideVolume(), m_AbsorptionVolume, m_AnisotropyVolume, m_InitialBackgroundAbsorption, m_Rng, m_ScatteringVolume, m_SegmentationVolume, m_TissueParameters, and RandomizeTissueCoefficients().

◆ GetAbsorptionVolume()

mitk::pa::Volume::Pointer mitk::pa::InSilicoTissueVolume::GetAbsorptionVolume ( )

Definition at line 219 of file mitkPAInSilicoTissueVolume.cpp.

References m_AbsorptionVolume.

◆ GetAnisotropyVolume()

mitk::pa::Volume::Pointer mitk::pa::InSilicoTissueVolume::GetAnisotropyVolume ( )

Definition at line 375 of file mitkPAInSilicoTissueVolume.cpp.

References m_AnisotropyVolume.

◆ GetScatteringVolume()

mitk::pa::Volume::Pointer mitk::pa::InSilicoTissueVolume::GetScatteringVolume ( )

Definition at line 370 of file mitkPAInSilicoTissueVolume.cpp.

References m_ScatteringVolume.

◆ GetSegmentationVolume()

mitk::pa::Volume::Pointer mitk::pa::InSilicoTissueVolume::GetSegmentationVolume ( )

Definition at line 224 of file mitkPAInSilicoTissueVolume.cpp.

References m_SegmentationVolume.

◆ GetSpacing()

double mitk::pa::InSilicoTissueVolume::GetSpacing ( )

Definition at line 104 of file mitkPAInSilicoTissueVolume.cpp.

References m_AbsorptionVolume.

◆ GetTDim()

virtual unsigned int mitk::pa::InSilicoTissueVolume::GetTDim ( )

virtual

◆ GetTissueParameters()

virtual TissueGeneratorParameters::Pointer mitk::pa::InSilicoTissueVolume::GetTissueParameters ( )

virtual

◆ IsInsideVolume()

bool mitk::pa::InSilicoTissueVolume::IsInsideVolume	(	int	x,
		int	y,
		int	z
	)

IsInsideVolume.

Parameters

x
y
z

Returns: true if the voxel location is inside the volume

Definition at line 212 of file mitkPAInSilicoTissueVolume.cpp.

References m_TissueParameters.

Referenced by FinalizeVolume(), and SetVolumeValues().

◆ mitkClassMacroItkParent()

mitk::pa::InSilicoTissueVolume::mitkClassMacroItkParent	(	InSilicoTissueVolume	,
		itk::LightObject
	)

◆ mitkNewMacro2Param()

mitk::pa::InSilicoTissueVolume::mitkNewMacro2Param	(	Self	,
		TissueGeneratorParameters::Pointer	,
		std::mt19937 *
	)

◆ New()

mitk::pa::InSilicoTissueVolume::Pointer mitk::pa::InSilicoTissueVolume::New	(	mitk::pa::Volume::Pointer	absorptionVolume,
		Volume::Pointer	scatteringVolume,
		Volume::Pointer	anisotropyVolume,
		Volume::Pointer	segmentationVolume,
		TissueGeneratorParameters::Pointer	tissueParameters,
		mitk::PropertyList::Pointer	propertyList
	)

static

Definition at line 163 of file mitkPAInSilicoTissueVolume.cpp.

References InSilicoTissueVolume().

Referenced by mitk::pa::InSilicoTissueGenerator::GenerateInSilicoData(), mitk::pa::PhantomTissueGenerator::GeneratePhantomData(), and mitk::pa::IOUtil::LoadInSilicoTissueVolumeFromNrrdFile().

◆ RandomizeTissueCoefficients()

void mitk::pa::InSilicoTissueVolume::RandomizeTissueCoefficients	(	long	rngSeed,
		bool	useRngSeed,
		double	percentage
	)

protected

Definition at line 336 of file mitkPAInSilicoTissueVolume.cpp.

References m_AbsorptionVolume, m_ScatteringVolume, and m_TissueParameters.

Referenced by FinalizeVolume().

◆ SetAbsorptionVolume()

void mitk::pa::InSilicoTissueVolume::SetAbsorptionVolume ( Volume::Pointer volume )

Definition at line 380 of file mitkPAInSilicoTissueVolume.cpp.

References m_AbsorptionVolume.

◆ SetAnisotropyVolume()

void mitk::pa::InSilicoTissueVolume::SetAnisotropyVolume ( Volume::Pointer volume )

Definition at line 390 of file mitkPAInSilicoTissueVolume.cpp.

References m_AnisotropyVolume.

◆ SetScatteringVolume()

void mitk::pa::InSilicoTissueVolume::SetScatteringVolume ( Volume::Pointer volume )

Definition at line 385 of file mitkPAInSilicoTissueVolume.cpp.

References m_ScatteringVolume.

◆ SetSegmentationVolume()

void mitk::pa::InSilicoTissueVolume::SetSegmentationVolume ( Volume::Pointer volume )

Definition at line 395 of file mitkPAInSilicoTissueVolume.cpp.

References m_SegmentationVolume.

◆ SetSpacing()

void mitk::pa::InSilicoTissueVolume::SetSpacing ( double spacing )

Definition at line 109 of file mitkPAInSilicoTissueVolume.cpp.

References m_AbsorptionVolume, m_AnisotropyVolume, m_ScatteringVolume, and m_SegmentationVolume.

◆ SetVolumeValues() [1/2]

void mitk::pa::InSilicoTissueVolume::SetVolumeValues	(	int	x,
		int	y,
		int	z,
		double	absorption,
		double	scattering,
		double	anisotropy,
		SegmentationType	segmentType
	)