Medical Imaging Interaction Toolkit  2018.4.99-389bf124
Medical Imaging Interaction Toolkit
Public Types | Public Member Functions | Static Public Member Functions | Protected Member Functions | Protected Attributes | List of all members
mitk::TimeFramesRegistrationHelper Class Reference

#include <mitkTimeFramesRegistrationHelper.h>

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Public Types

typedef ::map::algorithm::RegistrationAlgorithmBase RegistrationAlgorithmBaseType
 
typedef RegistrationAlgorithmBaseType::Pointer RegistrationAlgorithmPointer
 
typedef ::map::core::RegistrationBase RegistrationType
 
typedef RegistrationType::Pointer RegistrationPointer
 
typedef std::vector< mitk::TimeStepType > IgnoreListType
 

Public Member Functions

 mitkClassMacroItkParent (TimeFramesRegistrationHelper, itk::Object)
 
virtual void Set4DImage (const Image *_arg)
 
virtual const Image * Get4DImage ()
 
virtual void SetTargetMask (const Image *_arg)
 
virtual const Image * GetTargetMask ()
 
virtual void SetAlgorithm (RegistrationAlgorithmBaseType *_arg)
 
virtual RegistrationAlgorithmBaseType * GetAlgorithm ()
 
virtual void SetAllowUndefPixels (bool _arg)
 
virtual bool GetAllowUndefPixels () const
 
virtual void SetPaddingValue (double _arg)
 
virtual double GetPaddingValue () const
 
virtual void SetAllowUnregPixels (bool _arg)
 
virtual bool GetAllowUnregPixels () const
 
virtual void SetErrorValue (double _arg)
 
virtual double GetErrorValue () const
 
virtual void SetInterpolatorType (mitk::ImageMappingInterpolator::Type _arg)
 
virtual mitk::ImageMappingInterpolator::Type GetInterpolatorType () const
 
void ClearIgnoreList ()
 
void SetIgnoreList (const IgnoreListType &il)
 
virtual IgnoreListType GetIgnoreList () const
 
virtual double GetProgress () const
 
void Generate ()
 
Image::Pointer GetRegisteredImage ()
 

Static Public Member Functions

static Pointer New ()
 

Protected Member Functions

 TimeFramesRegistrationHelper ()
 
 ~TimeFramesRegistrationHelper () override
 
RegistrationPointer DoFrameRegistration (const mitk::Image *movingFrame, const mitk::Image *targetFrame, const mitk::Image *targetMask) const
 
mitk::Image::Pointer DoFrameMapping (const mitk::Image *movingFrame, const RegistrationType *reg, const mitk::Image *targetFrame) const
 
bool HasOutdatedResult () const
 
void CheckValidInputs () const
 
mitk::Image::Pointer GetFrameImage (const mitk::Image *image, mitk::TimePointType timePoint) const
 

Protected Attributes

RegistrationAlgorithmPointer m_Algorithm
 

Detailed Description

Helper class that assumes that registeres time frames of an passed image and returns the resulting new image. A typical use case for the helper class is motion correction in 3D+t images. Each selected frame will be registered to the first frame of the image. The user can define frames that may be not registered. These frames will be copied directly. Per default all frames will be registered. The user may set a mask for the target frame (1st frame). If this mask image has mulitple time steps, the first time step will be used. The helper class invokes three eventtypes:

  • mitk::FrameRegistrationEvent: when ever a frame was registered.
  • mitk::FrameMappingEvent: when ever a frame was mapped registered.
  • itk::ProgressEvent: when ever a new frame was added to the result image.

Definition at line 43 of file mitkTimeFramesRegistrationHelper.h.

Member Typedef Documentation

◆ IgnoreListType

typedef std::vector<mitk::TimeStepType> mitk::TimeFramesRegistrationHelper::IgnoreListType

Definition at line 55 of file mitkTimeFramesRegistrationHelper.h.

◆ RegistrationAlgorithmBaseType

typedef ::map::algorithm::RegistrationAlgorithmBase mitk::TimeFramesRegistrationHelper::RegistrationAlgorithmBaseType

Definition at line 48 of file mitkTimeFramesRegistrationHelper.h.

◆ RegistrationAlgorithmPointer

typedef RegistrationAlgorithmBaseType::Pointer mitk::TimeFramesRegistrationHelper::RegistrationAlgorithmPointer

Definition at line 51 of file mitkTimeFramesRegistrationHelper.h.

◆ RegistrationPointer

typedef RegistrationType::Pointer mitk::TimeFramesRegistrationHelper::RegistrationPointer

Definition at line 53 of file mitkTimeFramesRegistrationHelper.h.

◆ RegistrationType

typedef ::map::core::RegistrationBase mitk::TimeFramesRegistrationHelper::RegistrationType

Definition at line 52 of file mitkTimeFramesRegistrationHelper.h.

Constructor & Destructor Documentation

◆ TimeFramesRegistrationHelper()

mitk::TimeFramesRegistrationHelper::TimeFramesRegistrationHelper ( )
inlineprotected

Definition at line 107 of file mitkTimeFramesRegistrationHelper.h.

◆ ~TimeFramesRegistrationHelper()

mitk::TimeFramesRegistrationHelper::~TimeFramesRegistrationHelper ( )
inlineoverrideprotected

Definition at line 120 of file mitkTimeFramesRegistrationHelper.h.

References image.

Member Function Documentation

◆ CheckValidInputs()

void mitk::TimeFramesRegistrationHelper::CheckValidInputs ( ) const
protected

Check if the fit can be generated and all needed inputs are valid. Throw an exception for a non valid or missing input.

Definition at line 201 of file mitkTimeFramesRegistrationHelper.cpp.

References m_Algorithm, and mitkThrow.

Referenced by Generate().

◆ ClearIgnoreList()

void mitk::TimeFramesRegistrationHelper::ClearIgnoreList ( )

cleares the ignore list. Therefore all frames will be processed.

Definition at line 126 of file mitkTimeFramesRegistrationHelper.cpp.

◆ DoFrameMapping()

mitk::Image::Pointer mitk::TimeFramesRegistrationHelper::DoFrameMapping ( const mitk::Image *  movingFrame,
const RegistrationType *  reg,
const mitk::Image *  targetFrame 
) const
protected

Definition at line 150 of file mitkTimeFramesRegistrationHelper.cpp.

References mitk::BaseData::GetGeometry(), and mitk::ImageMappingHelper::map().

Referenced by Generate().

◆ DoFrameRegistration()

mitk::TimeFramesRegistrationHelper::RegistrationPointer mitk::TimeFramesRegistrationHelper::DoFrameRegistration ( const mitk::Image *  movingFrame,
const mitk::Image *  targetFrame,
const mitk::Image *  targetMask 
) const
protected

Definition at line 134 of file mitkTimeFramesRegistrationHelper.cpp.

References mitk::MITKAlgorithmHelper::GetRegistration(), m_Algorithm, mitk::MITKAlgorithmHelper::SetAllowImageCasting(), mitk::MITKAlgorithmHelper::SetData(), and mitk::MaskedAlgorithmHelper::SetMasks().

Referenced by Generate().

◆ Generate()

void mitk::TimeFramesRegistrationHelper::Generate ( )

Commences the generation of the registered 4D image. Stores the result internally. After this method call is finished the result can be retrieved via GetRegisteredImage.

Precondition
4D image must be set
4D image must has more then one frame
Reg algorithm must be set
Ignore list values must be within the time geometry of the image
Postcondition
Result image was generated.

Definition at line 36 of file mitkTimeFramesRegistrationHelper.cpp.

References CheckValidInputs(), DoFrameMapping(), DoFrameRegistration(), GetFrameImage(), mask, and mitk::Image::ReferenceMemory.

Referenced by GetRegisteredImage().

◆ Get4DImage()

virtual const Image* mitk::TimeFramesRegistrationHelper::Get4DImage ( )
virtual

◆ GetAlgorithm()

virtual RegistrationAlgorithmBaseType* mitk::TimeFramesRegistrationHelper::GetAlgorithm ( )
virtual

◆ GetAllowUndefPixels()

virtual bool mitk::TimeFramesRegistrationHelper::GetAllowUndefPixels ( ) const
virtual

◆ GetAllowUnregPixels()

virtual bool mitk::TimeFramesRegistrationHelper::GetAllowUnregPixels ( ) const
virtual

◆ GetErrorValue()

virtual double mitk::TimeFramesRegistrationHelper::GetErrorValue ( ) const
virtual

◆ GetFrameImage()

mitk::Image::Pointer mitk::TimeFramesRegistrationHelper::GetFrameImage ( const mitk::Image *  image,
mitk::TimePointType  timePoint 
) const
protected

Definition at line 23 of file mitkTimeFramesRegistrationHelper.cpp.

References mitk::ImageTimeSelector::New().

Referenced by Generate().

◆ GetIgnoreList()

virtual IgnoreListType mitk::TimeFramesRegistrationHelper::GetIgnoreList ( ) const
virtual

◆ GetInterpolatorType()

virtual mitk::ImageMappingInterpolator::Type mitk::TimeFramesRegistrationHelper::GetInterpolatorType ( ) const
virtual

◆ GetPaddingValue()

virtual double mitk::TimeFramesRegistrationHelper::GetPaddingValue ( ) const
virtual

◆ GetProgress()

double mitk::TimeFramesRegistrationHelper::GetProgress ( ) const
virtual

Definition at line 231 of file mitkTimeFramesRegistrationHelper.cpp.

◆ GetRegisteredImage()

mitk::Image::Pointer mitk::TimeFramesRegistrationHelper::GetRegisteredImage ( )

Returns the generated images. Triggers Generate() if result is outdated.

Precondition
4D image must be set
4D image must has more then one frame
Reg algorithm must be set
Ignore list values must be within the time geometry of the image

Definition at line 107 of file mitkTimeFramesRegistrationHelper.cpp.

References Generate(), HasOutdatedResult(), and SetIgnoreList().

◆ GetTargetMask()

virtual const Image* mitk::TimeFramesRegistrationHelper::GetTargetMask ( )
virtual

◆ HasOutdatedResult()

bool mitk::TimeFramesRegistrationHelper::HasOutdatedResult ( ) const
protected

Definition at line 158 of file mitkTimeFramesRegistrationHelper.cpp.

References m_Algorithm.

Referenced by GetRegisteredImage().

◆ mitkClassMacroItkParent()

mitk::TimeFramesRegistrationHelper::mitkClassMacroItkParent ( TimeFramesRegistrationHelper  ,
itk::Object   
)

◆ New()

static Pointer mitk::TimeFramesRegistrationHelper::New ( )
static

Referenced by QmitkFramesRegistrationJob::run().

◆ Set4DImage()

virtual void mitk::TimeFramesRegistrationHelper::Set4DImage ( const Image *  _arg)
virtual

◆ SetAlgorithm()

virtual void mitk::TimeFramesRegistrationHelper::SetAlgorithm ( RegistrationAlgorithmBaseType *  _arg)
virtual

◆ SetAllowUndefPixels()

virtual void mitk::TimeFramesRegistrationHelper::SetAllowUndefPixels ( bool  _arg)
virtual

◆ SetAllowUnregPixels()

virtual void mitk::TimeFramesRegistrationHelper::SetAllowUnregPixels ( bool  _arg)
virtual

◆ SetErrorValue()

virtual void mitk::TimeFramesRegistrationHelper::SetErrorValue ( double  _arg)
virtual

◆ SetIgnoreList()

void mitk::TimeFramesRegistrationHelper::SetIgnoreList ( const IgnoreListType &  il)

Definition at line 119 of file mitkTimeFramesRegistrationHelper.cpp.

Referenced by GetRegisteredImage().

◆ SetInterpolatorType()

virtual void mitk::TimeFramesRegistrationHelper::SetInterpolatorType ( mitk::ImageMappingInterpolator::Type  _arg)
virtual

◆ SetPaddingValue()

virtual void mitk::TimeFramesRegistrationHelper::SetPaddingValue ( double  _arg)
virtual

◆ SetTargetMask()

virtual void mitk::TimeFramesRegistrationHelper::SetTargetMask ( const Image *  _arg)
virtual

Member Data Documentation

◆ m_Algorithm

RegistrationAlgorithmPointer mitk::TimeFramesRegistrationHelper::m_Algorithm
protected

Definition at line 135 of file mitkTimeFramesRegistrationHelper.h.

Referenced by CheckValidInputs(), DoFrameRegistration(), and HasOutdatedResult().

The documentation for this class was generated from the following files: