#include <mitkCLUtil.h>

Public Types
enum	MorphologicalDimensions { Axial, Coronal, Sagital, All }
	The MorphologicalDimensions enum. More...

Static Public Member Functions
static void	CreateCheckerboardMask (mitk::Image::Pointer image, mitk::Image::Pointer &outimage)
	CreateCheckerBoardPredictionMask. More...

static void	InterpolateCheckerboardPrediction (mitk::Image::Pointer checkerboard_prediction, mitk::Image::Pointer &checkerboard_mask, mitk::Image::Pointer &outimage)
	InterpolateCreateCheckerboardPrediction. More...

static void	CountVoxel (mitk::Image::Pointer image, std::map< unsigned int, unsigned int > &map)
	CountVoxel. More...

static void	CountVoxel (mitk::Image::Pointer image, unsigned int label, unsigned int &count)
	CountVoxel. More...

static void	CountVoxel (mitk::Image::Pointer image, unsigned int &count)
	CountVoxel. More...

static void	SumVoxelForLabel (mitk::Image::Pointer image, const mitk::Image::Pointer &source, unsigned int label, double &val)
	SumVoxelForLabel. More...

static void	SqSumVoxelForLabel (mitk::Image::Pointer image, const mitk::Image::Pointer &source, unsigned int label, double &val)
	SqSumVoxelForLabel. More...

static void	LogicalAndImages (const Image::Pointer &image1, const Image::Pointer &image2, Image::Pointer &outimage)
	LogicalAndImages. More...

static void	GaussianFilter (mitk::Image::Pointer image, mitk::Image::Pointer &smoothed, double sigma)
	GaussianFilter. More...

static void	DifferenceOfGaussianFilter (mitk::Image::Pointer image, mitk::Image::Pointer &smoothed, double sigma1, double sigma2)
	SubtractGaussianFilter. More...

static void	LaplacianOfGaussianFilter (mitk::Image::Pointer image, mitk::Image::Pointer &smoothed, double sigma1)
	Laplacian of Gaussian. More...

static void	HessianOfGaussianFilter (mitk::Image::Pointer image, std::vector< mitk::Image::Pointer > &out, double sigma)
	SubtractGaussianFilter. More...

static void	LocalHistogram (mitk::Image::Pointer image, std::vector< mitk::Image::Pointer > &out, int Bins, int NeighbourhoodSize)
	Local Histogram. More...

template<typename TMatrixElementType >
static mitk::Image::Pointer	Transform (const Eigen::Matrix< TMatrixElementType, Eigen::Dynamic, Eigen::Dynamic > &matrix, const mitk::Image::Pointer &mask)
	transform More...

template<typename TMatrixElementType >
static Eigen::Matrix< TMatrixElementType, Eigen::Dynamic, Eigen::Dynamic >	Transform (const mitk::Image::Pointer &img, const mitk::Image::Pointer &mask)
	TransformImageToMatrix. More...

static void	DilateBinary (mitk::Image::Pointer &sourceImage, mitk::Image::Pointer &resultImage, int radius, MorphologicalDimensions d)
	DilateBinary. More...

static void	ErodeBinary (mitk::Image::Pointer &sourceImage, mitk::Image::Pointer &resultImage, int radius, MorphologicalDimensions d)
	ErodeBinary. More...

static void	ClosingBinary (mitk::Image::Pointer &sourceImage, mitk::Image::Pointer &resultImage, int radius, MorphologicalDimensions d)
	ClosingBinary. More...

static void	MergeLabels (mitk::Image::Pointer &img, const std::map< unsigned int, unsigned int > &map)
	MergeLabels. More...

static void	ConnectedComponentsImage (mitk::Image::Pointer &image, mitk::Image::Pointer &mask, mitk::Image::Pointer &outimage, unsigned int &num_components)
	ConnectedComponentsImage. More...

static void	GrabLabel (mitk::Image::Pointer &image, mitk::Image::Pointer &outimage, unsigned int label)
	GrabLabel. More...

static void	InsertLabel (mitk::Image::Pointer &image, mitk::Image::Pointer &maskImage, unsigned int label)
	itkInsertLabel More...

static void	ErodeGrayscale (mitk::Image::Pointer &image, unsigned int radius, mitk::CLUtil::MorphologicalDimensions d, mitk::Image::Pointer &outimage)
	ErodeGrayscale. More...

static void	DilateGrayscale (mitk::Image::Pointer &image, unsigned int radius, mitk::CLUtil::MorphologicalDimensions d, mitk::Image::Pointer &outimage)
	DilateGrayscale. More...

static void	FillHoleGrayscale (mitk::Image::Pointer &image, mitk::Image::Pointer &outimage)
	FillHoleGrayscale. More...

static void	ProbabilityMap (const mitk::Image::Pointer &sourceImage, double mean, double std_dev, mitk::Image::Pointer &resultImage)
	ProbabilityMap. More...

template<class TImageType >
static void	itkCountVoxel (TImageType *image, std::map< unsigned int, unsigned int > &map)

template<class TImageType >
static void	itkCountVoxel (TImageType *image, typename TImageType::PixelType label, unsigned int &count)

template<typename TImageType >
static void	itkCountVoxel (TImageType *mask, unsigned int &n_numSamples)

template<class TImageType1 , class TImageType2 >
static void	itkSampleLabel (TImageType1 image, TImageType2 output, double acceptrate, unsigned int label)

template<class TImageType >
static void	itkSampleLabel (TImageType *image, mitk::Image::Pointer &output, unsigned int n_samples_drawn)

Detailed Description

Definition at line 29 of file mitkCLUtil.h.

Member Enumeration Documentation

◆ MorphologicalDimensions

enum mitk::CLUtil::MorphologicalDimensions

The MorphologicalDimensions enum.

Enumerator
Axial
Coronal
Sagital
All

Definition at line 35 of file mitkCLUtil.h.

Member Function Documentation

◆ ClosingBinary()

void mitk::CLUtil::ClosingBinary	(	mitk::Image::Pointer &	sourceImage,
		mitk::Image::Pointer &	resultImage,
		int	radius,
		MorphologicalDimensions	d
	)

static

ClosingBinary.

Parameters

BinaryImage
BinaryImage
Size	of the StructuringElement
Dimension

Definition at line 158 of file mitkCLUtil.cpp.

References AccessFixedDimensionByItk_3, All, Axial, mitk::CastToItkImage(), mitk::CastToMitkImage(), Coronal, image, mitk::Image::New(), offset, mitk::operator!=(), mitk::operator==(), and Sagital.

◆ ConnectedComponentsImage()

void mitk::CLUtil::ConnectedComponentsImage	(	mitk::Image::Pointer &	image,
		mitk::Image::Pointer &	mask,
		mitk::Image::Pointer &	outimage,
		unsigned int &	num_components
	)

static

ConnectedComponentsImage.

Parameters

BinaryImage
BinaryImage
MultilabelImage
Number	of components found in the image

Definition at line 78 of file mitkCLUtil.cpp.

References AccessFixedDimensionByItk_3.

◆ CountVoxel() [1/3]

void mitk::CLUtil::CountVoxel	(	mitk::Image::Pointer	image,
		std::map< unsigned int, unsigned int > &	map
	)

static

CountVoxel.

Parameters

image
map

Definition at line 88 of file mitkCLUtil.cpp.

References AccessByItk_1, and itkCountVoxel().

Referenced by main(), ReadMitkProjectImageAndMask(), and Transform().

◆ CountVoxel() [2/3]

void mitk::CLUtil::CountVoxel	(	mitk::Image::Pointer	image,
		unsigned int	label,
		unsigned int &	count
	)

static

CountVoxel.

Parameters

image
label
count

Definition at line 93 of file mitkCLUtil.cpp.

References AccessByItk_2, and itkCountVoxel().

◆ CountVoxel() [3/3]

void mitk::CLUtil::CountVoxel	(	mitk::Image::Pointer	image,
		unsigned int &	count
	)

static

CountVoxel.

Parameters

image
count

Definition at line 98 of file mitkCLUtil.cpp.

References AccessByItk_1, and itkCountVoxel().

◆ CreateCheckerboardMask()

void mitk::CLUtil::CreateCheckerboardMask	(	mitk::Image::Pointer	image,
		mitk::Image::Pointer &	outimage
	)

static

CreateCheckerBoardPredictionMask.

Parameters

image
outimage

Definition at line 103 of file mitkCLUtil.cpp.

References AccessFixedDimensionByItk_1.

◆ DifferenceOfGaussianFilter()

void mitk::CLUtil::DifferenceOfGaussianFilter	(	mitk::Image::Pointer	image,
		mitk::Image::Pointer &	smoothed,
		double	sigma1,
		double	sigma2
	)

static

SubtractGaussianFilter.

Parameters

image
smoothed	(Result is sigma1-sigma2)
sigma1
sigma2

Definition at line 124 of file mitkCLUtil.cpp.

References AccessFixedDimensionByItk_3.

◆ DilateBinary()

void mitk::CLUtil::DilateBinary	(	mitk::Image::Pointer &	sourceImage,
		mitk::Image::Pointer &	resultImage,
		int	radius,
		MorphologicalDimensions	d
	)

static

DilateBinary.

Parameters

BinaryImage
BinaryImage
Size	of the StructuringElement
Dimension

Definition at line 146 of file mitkCLUtil.cpp.

References AccessFixedDimensionByItk_3.

◆ DilateGrayscale()

void mitk::CLUtil::DilateGrayscale	(	mitk::Image::Pointer &	image,
		unsigned int	radius,
		mitk::CLUtil::MorphologicalDimensions	d,
		mitk::Image::Pointer &	outimage
	)

static

DilateGrayscale.

Parameters

image
outimage
radius
d

Definition at line 58 of file mitkCLUtil.cpp.

References AccessFixedDimensionByItk_3.

Referenced by main().

◆ ErodeBinary()

void mitk::CLUtil::ErodeBinary	(	mitk::Image::Pointer &	sourceImage,
		mitk::Image::Pointer &	resultImage,
		int	radius,
		MorphologicalDimensions	d
	)

static

ErodeBinary.

Parameters

BinaryImage
BinaryImage
Size	of the StructuringElement
Dimension

Definition at line 152 of file mitkCLUtil.cpp.

References AccessFixedDimensionByItk_3.

◆ ErodeGrayscale()

void mitk::CLUtil::ErodeGrayscale	(	mitk::Image::Pointer &	image,
		unsigned int	radius,
		mitk::CLUtil::MorphologicalDimensions	d,
		mitk::Image::Pointer &	outimage
	)

static

ErodeGrayscale.

Parameters

image
outimage
radius
d

Definition at line 53 of file mitkCLUtil.cpp.

References AccessFixedDimensionByItk_3.

Referenced by main().

◆ FillHoleGrayscale()

void mitk::CLUtil::FillHoleGrayscale	(	mitk::Image::Pointer &	image,
		mitk::Image::Pointer &	outimage
	)

static

FillHoleGrayscale.

Parameters

image
outimage

Definition at line 63 of file mitkCLUtil.cpp.

References AccessFixedDimensionByItk_1.

Referenced by main().

◆ GaussianFilter()

void mitk::CLUtil::GaussianFilter	(	mitk::Image::Pointer	image,
		mitk::Image::Pointer &	smoothed,
		double	sigma
	)

static

GaussianFilter.

Parameters

image
smoothed
sigma

Definition at line 119 of file mitkCLUtil.cpp.

References AccessFixedDimensionByItk_2.

Referenced by ProcessFeatureImages().

◆ GrabLabel()

void mitk::CLUtil::GrabLabel	(	mitk::Image::Pointer &	image,
		mitk::Image::Pointer &	outimage,
		unsigned int	label
	)

static

GrabLabel.

Parameters

MultiLabelImage
outimage
label

Definition at line 73 of file mitkCLUtil.cpp.

References AccessFixedDimensionByItk_2.

◆ HessianOfGaussianFilter()

void mitk::CLUtil::HessianOfGaussianFilter	(	mitk::Image::Pointer	image,
		std::vector< mitk::Image::Pointer > &	out,
		double	sigma
	)

static

SubtractGaussianFilter.

Parameters

image
smoothed	(Result is sigma1-sigma2)
sigma1
sigma2

Definition at line 134 of file mitkCLUtil.cpp.

References AccessByItk_2.

◆ InsertLabel()

void mitk::CLUtil::InsertLabel	(	mitk::Image::Pointer &	image,
		mitk::Image::Pointer &	maskImage,
		unsigned int	label
	)

static

itkInsertLabel

Parameters

image
maskImage
label

Definition at line 68 of file mitkCLUtil.cpp.

References AccessByItk_2.

◆ InterpolateCheckerboardPrediction()

void mitk::CLUtil::InterpolateCheckerboardPrediction	(	mitk::Image::Pointer	checkerboard_prediction,
		mitk::Image::Pointer &	checkerboard_mask,
		mitk::Image::Pointer &	outimage
	)

static

InterpolateCreateCheckerboardPrediction.

Parameters

image
outimage

Definition at line 114 of file mitkCLUtil.cpp.

References AccessFixedDimensionByItk_2.

◆ itkCountVoxel() [1/3]

template<class TImageType >

static void mitk::CLUtil::itkCountVoxel	(	TImageType *	image,
		std::map< unsigned int, unsigned int > &	map
	)

inlinestatic

Definition at line 319 of file mitkCLUtil.h.

References image.

Referenced by CountVoxel().

◆ itkCountVoxel() [2/3]

template<class TImageType >

static void mitk::CLUtil::itkCountVoxel	(	TImageType *	image,
		typename TImageType::PixelType	label,
		unsigned int &	count
	)

inlinestatic

Definition at line 332 of file mitkCLUtil.h.

◆ itkCountVoxel() [3/3]

template<typename TImageType >

static void mitk::CLUtil::itkCountVoxel	(	TImageType *	mask,
		unsigned int &	n_numSamples
	)

inlinestatic

Definition at line 343 of file mitkCLUtil.h.

References mask.

◆ itkSampleLabel() [1/2]

template<class TImageType1 , class TImageType2 >

static void mitk::CLUtil::itkSampleLabel	(	TImageType1 *	image,
		TImageType2 *	output,
		double	acceptrate,
		unsigned int	label
	)

inlinestatic

Definition at line 355 of file mitkCLUtil.h.

Referenced by main().

◆ itkSampleLabel() [2/2]

template<class TImageType >

static void mitk::CLUtil::itkSampleLabel	(	TImageType *	image,
		mitk::Image::Pointer &	output,
		unsigned int	n_samples_drawn
	)

inlinestatic

Definition at line 374 of file mitkCLUtil.h.

References mitk::CastToItkImage(), mitk::CastToMitkImage(), and MITK_INFO.

◆ LaplacianOfGaussianFilter()

void mitk::CLUtil::LaplacianOfGaussianFilter	(	mitk::Image::Pointer	image,
		mitk::Image::Pointer &	smoothed,
		double	sigma1
	)

static

Laplacian of Gaussian.

Parameters

image
smoothed	(Result is sigma1-sigma2)
sigma1
sigma2

Definition at line 129 of file mitkCLUtil.cpp.

References AccessByItk_2.

◆ LocalHistogram()

void mitk::CLUtil::LocalHistogram	(	mitk::Image::Pointer	image,
		std::vector< mitk::Image::Pointer > &	out,
		int	Bins,
		int	NeighbourhoodSize
	)

static

Local Histogram.

Parameters

image
smoothed	(Result is sigma1-sigma2)
sigma1
sigma2

Definition at line 139 of file mitkCLUtil.cpp.

References AccessByItk_3.

◆ LogicalAndImages()

void mitk::CLUtil::LogicalAndImages	(	const Image::Pointer &	image1,
		const Image::Pointer &	image2,
		Image::Pointer &	outimage
	)

static

LogicalAndImages.

Parameters

image1
image2

Definition at line 108 of file mitkCLUtil.cpp.

References AccessFixedDimensionByItk_2.

◆ MergeLabels()

void mitk::CLUtil::MergeLabels	(	mitk::Image::Pointer &	img,
		const std::map< unsigned int, unsigned int > &	map
	)

static

MergeLabels.

Parameters

MultilabelImage
map	merge instruction where each map entry defines a mapping instruction. Key <sourcelabel> - Value <targetlabel>

Definition at line 83 of file mitkCLUtil.cpp.

References AccessByItk_1.

Referenced by main(), and ReadMitkProjectImageAndMask().

◆ ProbabilityMap()

void mitk::CLUtil::ProbabilityMap	(	const mitk::Image::Pointer &	sourceImage,
		double	mean,
		double	std_dev,
		mitk::Image::Pointer &	resultImage
	)

static

ProbabilityMap.

Parameters

sourceImage
mean
std_dev
resultImage

Definition at line 48 of file mitkCLUtil.cpp.

References AccessFixedDimensionByItk_3.

Referenced by main(), and ProcessFeatureImages().

◆ SqSumVoxelForLabel()

static void mitk::CLUtil::SqSumVoxelForLabel	(	mitk::Image::Pointer	image,
		const mitk::Image::Pointer &	source,
		unsigned int	label,
		double &	val
	)

static

SqSumVoxelForLabel.

Parameters

image
source
label
val

◆ SumVoxelForLabel()

static void mitk::CLUtil::SumVoxelForLabel	(	mitk::Image::Pointer	image,
		const mitk::Image::Pointer &	source,
		unsigned int	label,
		double &	val
	)

static

SumVoxelForLabel.

Parameters

image
source
label
val

◆ Transform() [1/2]

template<typename TMatrixElementType >

static mitk::Image::Pointer mitk::CLUtil::Transform	(	const Eigen::Matrix< TMatrixElementType, Eigen::Dynamic, Eigen::Dynamic > &	matrix,
		const mitk::Image::Pointer &	mask
	)

inlinestatic

transform

Parameters

matrix
mask
outimage

Definition at line 153 of file mitkCLUtil.h.

References mitk::CastToItkImage(), CountVoxel(), mitk::GrabItkImageMemory(), MITK_ERROR, and mitk::Image::New().

◆ Transform() [2/2]

template<typename TMatrixElementType >

static Eigen::Matrix<TMatrixElementType, Eigen::Dynamic, Eigen::Dynamic> mitk::CLUtil::Transform	(	const mitk::Image::Pointer &	img,
		const mitk::Image::Pointer &	mask
	)

inlinestatic

TransformImageToMatrix.

Parameters

in_img
mask
out_matrix

Definition at line 197 of file mitkCLUtil.h.

References mitk::CastToItkImage(), CountVoxel(), image, and mask.

The documentation for this class was generated from the following files:

Public Types

Static Public Member Functions

Detailed Description

Member Enumeration Documentation

◆ MorphologicalDimensions

Member Function Documentation

◆ ClosingBinary()

◆ ConnectedComponentsImage()

◆ CountVoxel() [1/3]

◆ CountVoxel() [2/3]

◆ CountVoxel() [3/3]

◆ CreateCheckerboardMask()

◆ DifferenceOfGaussianFilter()

◆ DilateBinary()

◆ DilateGrayscale()

◆ ErodeBinary()

◆ ErodeGrayscale()

◆ FillHoleGrayscale()

◆ GaussianFilter()

◆ GrabLabel()

◆ HessianOfGaussianFilter()

◆ InsertLabel()

◆ InterpolateCheckerboardPrediction()

◆ itkCountVoxel() [1/3]

◆ itkCountVoxel() [2/3]

◆ itkCountVoxel() [3/3]

◆ itkSampleLabel() [1/2]

◆ itkSampleLabel() [2/2]

◆ LaplacianOfGaussianFilter()

◆ LocalHistogram()

◆ LogicalAndImages()

◆ MergeLabels()

◆ ProbabilityMap()

◆ SqSumVoxelForLabel()

◆ SumVoxelForLabel()

◆ Transform() [1/2]

◆ Transform() [2/2]