mitkTractAnalyzer.h

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/*===================================================================

The Medical Imaging Interaction Toolkit (MITK)

Copyright (c) German Cancer Research Center,
Division of Medical and Biological Informatics.
All rights reserved.

This software is distributed WITHOUT ANY WARRANTY; without
even the implied warranty of MERCHANTABILITY or FITNESS FOR
A PARTICULAR PURPOSE.

See LICENSE.txt or http://www.mitk.org for details.

===================================================================*/


#ifndef __mitkTractAnalyzer_h_
#define __mitkTractAnalyzer_h_

#include "MitkQuantificationExports.h"
#include <itkImage.h>
#include "mitkImage.h"
#include "mitkImageCast.h"

#include <mitkTbssRoiImage.h>
#include <mitkPointSet.h>


namespace mitk{
class MITKQUANTIFICATION_EXPORT TractAnalyzer
{

public:


  TractAnalyzer();
  ~TractAnalyzer() {}


  typedef itk::Image<unsigned char,3> CharImageType;
  typedef itk::Image<float,3> FloatImageType;


  void MakeRoi();



  mitk::TbssRoiImage::Pointer GetRoiImage()
  {
    return m_TbssRoi;
  }


  void SetInputImage(mitk::Image::Pointer inputImage)
  {
    m_InputImage = inputImage;
  }


  void SetPointSet(mitk::PointSet::Pointer pointSet)
  {
    m_PointSetNode = pointSet;
  }


  void SetThreshold(double threshold)
  {
    m_Threshold = threshold;
  }



  std::string GetPathDescription()
  {
    return m_PathDescription;
  }

  itkGetMacro(CostSum, double)

protected:



  std::vector< itk::Index<3> > CreateSegment(itk::Index<3> startPoint, itk::Index<3> endPoint);


  mitk::TbssRoiImage::Pointer m_TbssRoi;

  mitk::Image::Pointer m_InputImage;

  double m_Threshold;

  mitk::PointSet::Pointer m_PointSetNode;

  std::string m_PathDescription;

  double m_CostSum;


private:

};

}

#endif //__itkTractAnalyzer_h_